Wall clock time and date at job start Sun Mar 29 2020 21:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00245 * 2 1 4 4 H 1.48502 * 109.46821 * 269.99813 * 3 2 1 5 5 H 1.48504 * 109.47204 * 29.99705 * 3 2 1 6 6 H 1.48504 * 109.47330 * 149.99828 * 3 2 1 7 7 C 1.37881 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99848 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00096 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47142 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47218 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54272 * 291.62572 * 11 10 9 13 13 O 1.42102 * 110.54259 * 68.37729 * 11 10 9 14 14 C 1.76199 * 104.45230 * 179.97438 * 11 10 9 15 15 N 1.30494 * 125.65560 * 269.69528 * 14 11 10 16 16 C 1.34122 * 109.25982 * 179.88883 * 15 14 11 17 17 C 1.34674 * 108.02264 * 0.37088 * 16 15 14 18 18 N 1.35047 * 125.64792 * 89.99571 * 14 11 10 19 19 H 0.97003 * 126.39674 * 359.97438 * 18 14 11 20 20 H 0.97002 * 119.99491 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47269 * 60.00218 * 9 7 2 22 22 H 1.09001 * 109.47567 * 300.00382 * 9 7 2 23 23 H 1.09001 * 109.47469 * 60.00203 * 10 9 7 24 24 H 1.08998 * 109.47079 * 299.99928 * 10 9 7 25 25 H 1.08008 * 125.99148 * 180.11406 * 16 15 14 26 26 H 1.08000 * 126.59287 * 179.81020 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0001 11 16 5.8354 -2.6367 0.0001 12 8 6.3341 -2.1464 -1.2369 13 8 6.3340 -2.1463 1.2371 14 6 6.2751 -4.3429 0.0010 15 7 6.4703 -5.0776 1.0617 16 6 6.7871 -6.3249 0.6838 17 6 6.7962 -6.3627 -0.6624 18 7 6.4714 -5.1057 -1.0960 19 1 6.3965 -4.8167 -2.0189 20 1 -0.4849 0.8401 -0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8746 -0.6809 -0.8905 23 1 3.6578 -3.1507 -0.8897 24 1 3.6584 -3.1502 0.8903 25 1 7.0017 -7.1528 1.3435 26 1 7.0168 -7.2202 -1.2808 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388269414.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:50 Heat of formation + Delta-G solvation = -46.243881 kcal Electronic energy + Delta-G solvation = -13791.446436 eV Core-core repulsion = 11190.388142 eV Total energy + Delta-G solvation = -2601.058294 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.14193 -38.31671 -37.18528 -35.91610 -33.77624 -33.50137 -30.86916 -27.93923 -24.11873 -22.93305 -22.54982 -20.75580 -19.78563 -19.00024 -17.28609 -17.07908 -16.97177 -16.33490 -16.03357 -15.43287 -15.09734 -14.80382 -14.72742 -13.80766 -13.35603 -13.26415 -13.07156 -13.01968 -12.80855 -12.23317 -11.94265 -11.70387 -11.44757 -11.40390 -11.28316 -10.81834 -9.98542 -8.34220 -6.40718 -1.14978 0.46424 1.35856 1.38674 1.48521 1.63157 1.78639 2.05163 2.32675 2.71918 3.00129 3.13956 3.80618 3.84723 4.09019 4.26410 4.39439 4.55020 4.75000 5.05938 5.07443 5.47630 5.51903 6.03320 6.17636 6.62769 6.65629 7.23684 8.81183 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.049362 B = 0.007016 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.106051 B = 3989.664513 C = 4204.296853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.014 3.986 3 Si 0.925 3.075 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.246 1.246 7 C -0.528 4.528 8 H 0.050 0.950 9 C -0.021 4.021 10 C -0.552 4.552 11 S 2.533 3.467 12 O -0.953 6.953 13 O -0.952 6.952 14 C -0.358 4.358 15 N -0.436 5.436 16 C -0.063 4.063 17 C 0.027 3.973 18 N -0.508 5.508 19 H 0.445 0.555 20 H 0.270 0.730 21 H 0.038 0.962 22 H 0.043 0.957 23 H 0.152 0.848 24 H 0.142 0.858 25 H 0.209 0.791 26 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.673 -12.519 -4.455 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.748 3.252 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.170 1.170 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.060 4.060 10 C -0.686 4.686 11 S 2.712 3.288 12 O -0.950 6.950 13 O -0.949 6.949 14 C -0.698 4.698 15 N -0.158 5.158 16 C -0.216 4.216 17 C -0.114 4.114 18 N -0.113 5.113 19 H 0.287 0.713 20 H 0.079 0.921 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.170 0.830 24 H 0.160 0.840 25 H 0.225 0.775 26 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 14.094 -11.422 -3.636 18.502 hybrid contribution -0.531 -0.208 -0.976 1.130 sum 13.563 -11.630 -4.611 18.452 Atomic orbital electron populations 1.70009 1.07987 1.28438 1.51563 1.25872 0.95620 1.03087 0.93888 0.86019 0.80020 0.79173 0.80027 1.18193 1.20256 1.16957 1.21121 0.90016 0.93975 1.51594 0.93172 1.19482 0.97272 0.90413 0.98791 1.29938 1.18220 1.07066 1.13356 1.04826 0.78845 0.71453 0.73699 1.93520 1.79338 1.77096 1.45022 1.93524 1.79106 1.76774 1.45455 1.36113 1.23865 1.22035 0.87803 1.70185 1.11925 1.04697 1.28988 1.23461 1.07820 0.95146 0.95145 1.24207 1.01227 0.88812 0.97169 1.43209 1.48703 1.09404 1.09949 0.71252 0.92108 0.94422 0.93828 0.82974 0.83978 0.77474 0.73913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.12 13.96 21.45 0.30 -56.82 15 2 C 0.01 0.79 5.47 84.66 0.46 1.26 15 3 Si 0.93 42.72 27.47 68.60 1.88 44.60 15 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 15 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 15 7 C -0.53 -29.13 9.66 25.60 0.25 -28.88 15 8 H 0.05 2.96 7.99 -2.91 -0.02 2.94 15 9 C -0.02 -0.92 4.05 29.85 0.12 -0.80 15 10 C -0.55 -19.24 5.92 71.98 0.43 -18.82 15 11 S 2.53 84.42 5.33 -56.49 -0.30 84.12 15 12 O -0.95 -32.97 17.94 -127.65 -2.29 -35.26 15 13 O -0.95 -38.89 17.93 -127.65 -2.29 -41.18 15 14 C -0.36 -10.31 7.75 180.26 1.40 -8.92 15 15 N -0.44 -13.49 11.22 -197.73 -2.22 -15.71 15 16 C -0.06 -1.30 11.87 83.53 0.99 -0.31 15 17 C 0.03 0.38 12.04 83.09 1.00 1.38 15 18 N -0.51 -9.91 6.14 -195.76 -1.20 -11.11 15 19 H 0.44 6.00 8.96 -92.71 -0.83 5.17 15 20 H 0.27 15.28 8.31 -92.71 -0.77 14.51 15 21 H 0.04 1.69 7.20 -2.38 -0.02 1.67 15 22 H 0.04 1.85 7.57 -2.39 -0.02 1.83 15 23 H 0.15 4.47 8.14 -2.39 -0.02 4.45 15 24 H 0.14 4.77 8.14 -2.39 -0.02 4.75 15 25 H 0.21 2.83 8.06 -2.91 -0.02 2.81 15 26 H 0.24 0.58 8.06 -2.91 -0.02 0.55 15 Total: -1.00 -79.04 249.92 -1.15 -80.19 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.32 Total: 6.26 kcal Atomic # 6 Polarization: -59.73 SS G_CDS: 4.64 Total: -55.09 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -3.12 Total: -83.65 kcal Atomic # 8 Polarization: -71.86 SS G_CDS: -4.58 Total: -76.44 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.60 kcal Atomic # 16 Polarization: 84.42 SS G_CDS: -0.30 Total: 84.12 kcal Total: -79.04 -1.15 -80.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388269414.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.945 kcal (2) G-P(sol) polarization free energy of solvation -79.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds