Wall clock time and date at job start Sun Mar 29 2020 21:43:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86799 * 120.00245 * 2 1
4 4 H 1.48502 * 109.46821 * 269.99813 * 3 2 1
5 5 H 1.48504 * 109.47204 * 29.99705 * 3 2 1
6 6 H 1.48504 * 109.47330 * 149.99828 * 3 2 1
7 7 C 1.37881 * 119.99914 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99848 * 0.02562 * 7 2 1
9 9 C 1.50696 * 120.00096 * 179.97438 * 7 2 1
10 10 C 1.52996 * 109.47142 * 180.02562 * 9 7 2
11 11 S 1.81399 * 109.47218 * 180.02562 * 10 9 7
12 12 O 1.42101 * 110.54272 * 291.62572 * 11 10 9
13 13 O 1.42102 * 110.54259 * 68.37729 * 11 10 9
14 14 C 1.76199 * 104.45230 * 179.97438 * 11 10 9
15 15 N 1.30494 * 125.65560 * 269.69528 * 14 11 10
16 16 C 1.34122 * 109.25982 * 179.88883 * 15 14 11
17 17 C 1.34674 * 108.02264 * 0.37088 * 16 15 14
18 18 N 1.35047 * 125.64792 * 89.99571 * 14 11 10
19 19 H 0.97003 * 126.39674 * 359.97438 * 18 14 11
20 20 H 0.97002 * 119.99491 * 0.02562 * 1 2 3
21 21 H 1.09004 * 109.47269 * 60.00218 * 9 7 2
22 22 H 1.09001 * 109.47567 * 300.00382 * 9 7 2
23 23 H 1.09001 * 109.47469 * 60.00203 * 10 9 7
24 24 H 1.08998 * 109.47079 * 299.99928 * 10 9 7
25 25 H 1.08008 * 125.99148 * 180.11406 * 16 15 14
26 26 H 1.08000 * 126.59287 * 179.81020 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5468 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1294 0.0005
9 6 3.5115 -1.1941 0.0000
10 6 4.0214 -2.6366 0.0001
11 16 5.8354 -2.6367 0.0001
12 8 6.3341 -2.1464 -1.2369
13 8 6.3340 -2.1463 1.2371
14 6 6.2751 -4.3429 0.0010
15 7 6.4703 -5.0776 1.0617
16 6 6.7871 -6.3249 0.6838
17 6 6.7962 -6.3627 -0.6624
18 7 6.4714 -5.1057 -1.0960
19 1 6.3965 -4.8167 -2.0189
20 1 -0.4849 0.8401 -0.0004
21 1 3.8752 -0.6797 0.8895
22 1 3.8746 -0.6809 -0.8905
23 1 3.6578 -3.1507 -0.8897
24 1 3.6584 -3.1502 0.8903
25 1 7.0017 -7.1528 1.3435
26 1 7.0168 -7.2202 -1.2808
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000388269414.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:43:50
Heat of formation + Delta-G solvation = -46.243881 kcal
Electronic energy + Delta-G solvation = -13791.446436 eV
Core-core repulsion = 11190.388142 eV
Total energy + Delta-G solvation = -2601.058294 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 230.051 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-43.14193 -38.31671 -37.18528 -35.91610 -33.77624 -33.50137 -30.86916 -27.93923
-24.11873 -22.93305 -22.54982 -20.75580 -19.78563 -19.00024 -17.28609 -17.07908
-16.97177 -16.33490 -16.03357 -15.43287 -15.09734 -14.80382 -14.72742 -13.80766
-13.35603 -13.26415 -13.07156 -13.01968 -12.80855 -12.23317 -11.94265 -11.70387
-11.44757 -11.40390 -11.28316 -10.81834 -9.98542 -8.34220 -6.40718 -1.14978
0.46424 1.35856 1.38674 1.48521 1.63157 1.78639 2.05163 2.32675
2.71918 3.00129 3.13956 3.80618 3.84723 4.09019 4.26410 4.39439
4.55020 4.75000 5.05938 5.07443 5.47630 5.51903 6.03320 6.17636
6.62769 6.65629 7.23684 8.81183
Molecular weight = 230.05amu
Principal moments of inertia in cm(-1)
A = 0.049362 B = 0.007016 C = 0.006658
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 567.106051 B = 3989.664513 C = 4204.296853
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.940 5.940
2 C 0.014 3.986
3 Si 0.925 3.075
4 H -0.257 1.257
5 H -0.277 1.277
6 H -0.246 1.246
7 C -0.528 4.528
8 H 0.050 0.950
9 C -0.021 4.021
10 C -0.552 4.552
11 S 2.533 3.467
12 O -0.953 6.953
13 O -0.952 6.952
14 C -0.358 4.358
15 N -0.436 5.436
16 C -0.063 4.063
17 C 0.027 3.973
18 N -0.508 5.508
19 H 0.445 0.555
20 H 0.270 0.730
21 H 0.038 0.962
22 H 0.043 0.957
23 H 0.152 0.848
24 H 0.142 0.858
25 H 0.209 0.791
26 H 0.245 0.755
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.673 -12.519 -4.455 19.066
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.185 4.185
3 Si 0.748 3.252
4 H -0.182 1.182
5 H -0.203 1.203
6 H -0.170 1.170
7 C -0.567 4.567
8 H 0.068 0.932
9 C -0.060 4.060
10 C -0.686 4.686
11 S 2.712 3.288
12 O -0.950 6.950
13 O -0.949 6.949
14 C -0.698 4.698
15 N -0.158 5.158
16 C -0.216 4.216
17 C -0.114 4.114
18 N -0.113 5.113
19 H 0.287 0.713
20 H 0.079 0.921
21 H 0.056 0.944
22 H 0.062 0.938
23 H 0.170 0.830
24 H 0.160 0.840
25 H 0.225 0.775
26 H 0.261 0.739
Dipole moment (debyes) X Y Z Total
from point charges 14.094 -11.422 -3.636 18.502
hybrid contribution -0.531 -0.208 -0.976 1.130
sum 13.563 -11.630 -4.611 18.452
Atomic orbital electron populations
1.70009 1.07987 1.28438 1.51563 1.25872 0.95620 1.03087 0.93888
0.86019 0.80020 0.79173 0.80027 1.18193 1.20256 1.16957 1.21121
0.90016 0.93975 1.51594 0.93172 1.19482 0.97272 0.90413 0.98791
1.29938 1.18220 1.07066 1.13356 1.04826 0.78845 0.71453 0.73699
1.93520 1.79338 1.77096 1.45022 1.93524 1.79106 1.76774 1.45455
1.36113 1.23865 1.22035 0.87803 1.70185 1.11925 1.04697 1.28988
1.23461 1.07820 0.95146 0.95145 1.24207 1.01227 0.88812 0.97169
1.43209 1.48703 1.09404 1.09949 0.71252 0.92108 0.94422 0.93828
0.82974 0.83978 0.77474 0.73913
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.12 13.96 21.45 0.30 -56.82 15
2 C 0.01 0.79 5.47 84.66 0.46 1.26 15
3 Si 0.93 42.72 27.47 68.60 1.88 44.60 15
4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 15
5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15
6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 15
7 C -0.53 -29.13 9.66 25.60 0.25 -28.88 15
8 H 0.05 2.96 7.99 -2.91 -0.02 2.94 15
9 C -0.02 -0.92 4.05 29.85 0.12 -0.80 15
10 C -0.55 -19.24 5.92 71.98 0.43 -18.82 15
11 S 2.53 84.42 5.33 -56.49 -0.30 84.12 15
12 O -0.95 -32.97 17.94 -127.65 -2.29 -35.26 15
13 O -0.95 -38.89 17.93 -127.65 -2.29 -41.18 15
14 C -0.36 -10.31 7.75 180.26 1.40 -8.92 15
15 N -0.44 -13.49 11.22 -197.73 -2.22 -15.71 15
16 C -0.06 -1.30 11.87 83.53 0.99 -0.31 15
17 C 0.03 0.38 12.04 83.09 1.00 1.38 15
18 N -0.51 -9.91 6.14 -195.76 -1.20 -11.11 15
19 H 0.44 6.00 8.96 -92.71 -0.83 5.17 15
20 H 0.27 15.28 8.31 -92.71 -0.77 14.51 15
21 H 0.04 1.69 7.20 -2.38 -0.02 1.67 15
22 H 0.04 1.85 7.57 -2.39 -0.02 1.83 15
23 H 0.15 4.47 8.14 -2.39 -0.02 4.45 15
24 H 0.14 4.77 8.14 -2.39 -0.02 4.75 15
25 H 0.21 2.83 8.06 -2.91 -0.02 2.81 15
26 H 0.24 0.58 8.06 -2.91 -0.02 0.55 15
Total: -1.00 -79.04 249.92 -1.15 -80.19
By element:
Atomic # 1 Polarization: 5.94 SS G_CDS: 0.32 Total: 6.26 kcal
Atomic # 6 Polarization: -59.73 SS G_CDS: 4.64 Total: -55.09 kcal
Atomic # 7 Polarization: -80.52 SS G_CDS: -3.12 Total: -83.65 kcal
Atomic # 8 Polarization: -71.86 SS G_CDS: -4.58 Total: -76.44 kcal
Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.60 kcal
Atomic # 16 Polarization: 84.42 SS G_CDS: -0.30 Total: 84.12 kcal
Total: -79.04 -1.15 -80.19 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000388269414.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.945 kcal
(2) G-P(sol) polarization free energy of solvation -79.035 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.090 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.189 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.244 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds