Wall clock time and date at job start Sun Mar 29 2020 22:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00235 * 2 1 4 4 H 1.48501 * 109.47559 * 269.99966 * 3 2 1 5 5 H 1.48502 * 109.47071 * 30.00159 * 3 2 1 6 6 H 1.48500 * 109.47388 * 149.99874 * 3 2 1 7 7 C 1.37879 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47241 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47174 * 179.97438 * 10 9 7 12 12 C 1.81393 * 102.99899 * 180.02562 * 11 10 9 13 13 C 1.53009 * 109.47107 * 180.02562 * 12 11 10 14 14 O 1.42899 * 109.47113 * 179.97438 * 13 12 11 15 15 C 1.42903 * 113.99629 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.53003 * 117.49371 * 243.61887 * 16 15 14 18 18 C 1.53001 * 117.49608 * 174.99962 * 16 15 14 19 19 H 0.97000 * 119.99488 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47122 * 59.99670 * 9 7 2 21 21 H 1.09000 * 109.46790 * 299.99807 * 9 7 2 22 22 H 1.09002 * 109.46809 * 60.00119 * 10 9 7 23 23 H 1.08996 * 109.47306 * 300.00636 * 10 9 7 24 24 H 1.08997 * 109.47613 * 60.00498 * 12 11 10 25 25 H 1.08998 * 109.47064 * 299.99509 * 12 11 10 26 26 H 1.09007 * 109.46516 * 59.99805 * 13 12 11 27 27 H 1.09004 * 109.47113 * 300.00274 * 13 12 11 28 28 H 1.09002 * 109.47382 * 59.99956 * 15 14 13 29 29 H 1.09001 * 109.46938 * 299.99942 * 15 14 13 30 30 H 1.08995 * 115.55630 * 29.32572 * 16 15 14 31 31 H 1.08998 * 117.50656 * 0.02562 * 17 16 15 32 32 H 1.09001 * 117.49674 * 145.02590 * 17 16 15 33 33 H 1.09003 * 117.49710 * 214.97494 * 18 16 15 34 34 H 1.08998 * 117.50185 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 16 1.3382 -5.2331 0.0013 12 6 2.6648 -6.4702 0.0020 13 6 2.0540 -7.8731 0.0020 14 8 3.0991 -8.8476 0.0020 15 6 2.6337 -10.1988 0.0014 16 6 3.8316 -11.1506 0.0021 17 6 4.0103 -12.0620 -1.2138 18 6 3.5435 -12.6486 0.1199 19 1 -0.4849 0.8401 0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8718 -3.6044 0.8906 23 1 2.8719 -3.6044 -0.8893 24 1 3.2809 -6.3419 0.8919 25 1 3.2809 -6.3427 -0.8881 26 1 1.4381 -8.0011 -0.8882 27 1 1.4375 -8.0009 0.8918 28 1 2.0298 -10.3747 -0.8887 29 1 2.0294 -10.3752 0.8912 30 1 4.7328 -10.7720 0.4844 31 1 3.2747 -11.9832 -2.0144 32 1 5.0292 -12.2830 -1.5317 33 1 4.2553 -13.2556 0.6795 34 1 2.5006 -12.9560 0.1974 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388323301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:15 Heat of formation + Delta-G solvation = -44.832747 kcal Electronic energy + Delta-G solvation = -12987.859907 eV Core-core repulsion = 10626.236242 eV Total energy + Delta-G solvation = -2361.623665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.66202 -36.83430 -33.68993 -31.43773 -30.86696 -27.05574 -25.32119 -23.09939 -22.70921 -21.09440 -20.75479 -17.21172 -16.52178 -16.33481 -15.72849 -15.35930 -14.64721 -14.50026 -14.13109 -13.70785 -13.45045 -12.95697 -12.09132 -12.00233 -11.80516 -11.73821 -11.49771 -11.21332 -11.02517 -10.77597 -10.58399 -10.47999 -10.19566 -9.66932 -9.66279 -9.53717 -9.08242 -8.42432 -7.18323 -6.06429 -4.10988 1.99032 3.19671 3.29370 3.34251 3.35779 3.39139 3.70533 4.41779 4.48742 4.55816 4.72610 4.94457 5.00532 5.03575 5.24801 5.28854 5.29225 5.36051 5.39997 5.54051 5.74767 5.76096 5.81747 5.91364 5.99096 6.18052 6.71453 7.04579 7.56020 7.64421 7.89898 8.26869 8.93974 9.52917 11.04453 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.097040 B = 0.003181 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 288.471820 B = 8800.739017 C = 8984.203900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.054 4.054 11 S -0.280 6.280 12 C -0.092 4.092 13 C 0.083 3.917 14 O -0.386 6.386 15 C 0.094 3.906 16 C -0.153 4.153 17 C -0.178 4.178 18 C -0.175 4.175 19 H 0.263 0.737 20 H 0.027 0.973 21 H 0.027 0.973 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.760 -21.251 -0.318 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.202 4.202 11 S -0.053 6.053 12 C -0.240 4.240 13 C 0.006 3.994 14 O -0.306 6.306 15 C 0.017 3.983 16 C -0.171 4.171 17 C -0.215 4.215 18 C -0.212 4.212 19 H 0.072 0.928 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.711 -21.277 -0.314 21.795 hybrid contribution 1.498 1.054 -0.015 1.832 sum 6.209 -20.223 -0.329 21.158 Atomic orbital electron populations 1.69974 1.06083 1.26887 1.49993 1.25017 0.94912 0.99335 0.95034 0.86506 0.79753 0.83045 0.78181 1.20540 1.21092 1.19807 1.21094 0.93032 0.90221 1.51787 0.92410 1.18917 0.93420 0.89203 0.98609 1.23705 1.01360 0.91808 1.03358 1.86798 1.16769 1.03576 1.98160 1.23131 1.00399 0.94919 1.05591 1.22113 0.89459 0.86563 1.01291 1.87853 1.32967 1.14248 1.95508 1.21980 0.94592 0.81488 1.00243 1.22151 1.00645 0.90929 1.03389 1.23078 1.02822 1.03899 0.91695 1.22977 1.02544 0.94890 1.00790 0.92763 0.95480 0.95456 0.91208 0.91207 0.89782 0.89786 0.92407 0.92368 0.93116 0.92816 0.86812 0.88619 0.88602 0.88405 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.97 4.98 -27.88 -0.14 0.84 16 10 C -0.05 -1.16 5.88 37.16 0.22 -0.94 16 11 S -0.28 -5.24 21.74 -107.50 -2.34 -7.57 16 12 C -0.09 -1.37 6.31 37.16 0.23 -1.14 16 13 C 0.08 1.08 5.95 37.16 0.22 1.30 16 14 O -0.39 -4.99 10.34 -35.23 -0.36 -5.36 16 15 C 0.09 0.94 6.22 37.16 0.23 1.17 16 16 C -0.15 -1.36 6.06 -90.62 -0.55 -1.91 16 17 C -0.18 -1.34 10.18 -26.73 -0.27 -1.61 16 18 C -0.17 -1.21 10.25 -26.73 -0.27 -1.48 16 19 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 20 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 23 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.08 1.23 8.14 -51.92 -0.42 0.80 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.47 7.88 -51.93 -0.41 0.06 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.10 0.69 8.03 -51.93 -0.42 0.27 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 304.42 15.07 4.59 4.59 Total: -1.00 -29.88 304.42 -9.00 -38.88 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -5.86 Total: -3.84 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -0.74 Total: -17.16 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.36 Total: -5.36 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.34 Total: -7.57 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.88 -9.00 -38.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388323301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.956 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds