Wall clock time and date at job start Sun Mar 29 2020 22:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00235 * 2 1 4 4 H 1.48501 * 109.47559 * 269.99966 * 3 2 1 5 5 H 1.48502 * 109.47071 * 30.00159 * 3 2 1 6 6 H 1.48500 * 109.47388 * 149.99874 * 3 2 1 7 7 C 1.37879 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47241 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47174 * 179.97438 * 10 9 7 12 12 C 1.81393 * 102.99899 * 180.02562 * 11 10 9 13 13 C 1.53009 * 109.47107 * 180.02562 * 12 11 10 14 14 O 1.42899 * 109.47113 * 179.97438 * 13 12 11 15 15 C 1.42903 * 113.99629 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.53003 * 117.49371 * 243.61887 * 16 15 14 18 18 C 1.53001 * 117.49608 * 174.99962 * 16 15 14 19 19 H 0.97000 * 119.99488 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47122 * 59.99670 * 9 7 2 21 21 H 1.09000 * 109.46790 * 299.99807 * 9 7 2 22 22 H 1.09002 * 109.46809 * 60.00119 * 10 9 7 23 23 H 1.08996 * 109.47306 * 300.00636 * 10 9 7 24 24 H 1.08997 * 109.47613 * 60.00498 * 12 11 10 25 25 H 1.08998 * 109.47064 * 299.99509 * 12 11 10 26 26 H 1.09007 * 109.46516 * 59.99805 * 13 12 11 27 27 H 1.09004 * 109.47113 * 300.00274 * 13 12 11 28 28 H 1.09002 * 109.47382 * 59.99956 * 15 14 13 29 29 H 1.09001 * 109.46938 * 299.99942 * 15 14 13 30 30 H 1.08995 * 115.55630 * 29.32572 * 16 15 14 31 31 H 1.08998 * 117.50656 * 0.02562 * 17 16 15 32 32 H 1.09001 * 117.49674 * 145.02590 * 17 16 15 33 33 H 1.09003 * 117.49710 * 214.97494 * 18 16 15 34 34 H 1.08998 * 117.50185 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 16 1.3382 -5.2331 0.0013 12 6 2.6648 -6.4702 0.0020 13 6 2.0540 -7.8731 0.0020 14 8 3.0991 -8.8476 0.0020 15 6 2.6337 -10.1988 0.0014 16 6 3.8316 -11.1506 0.0021 17 6 4.0103 -12.0620 -1.2138 18 6 3.5435 -12.6486 0.1199 19 1 -0.4849 0.8401 0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8718 -3.6044 0.8906 23 1 2.8719 -3.6044 -0.8893 24 1 3.2809 -6.3419 0.8919 25 1 3.2809 -6.3427 -0.8881 26 1 1.4381 -8.0011 -0.8882 27 1 1.4375 -8.0009 0.8918 28 1 2.0298 -10.3747 -0.8887 29 1 2.0294 -10.3752 0.8912 30 1 4.7328 -10.7720 0.4844 31 1 3.2747 -11.9832 -2.0144 32 1 5.0292 -12.2830 -1.5317 33 1 4.2553 -13.2556 0.6795 34 1 2.5006 -12.9560 0.1974 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388323301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:15 Heat of formation + Delta-G solvation = -60.932612 kcal Electronic energy + Delta-G solvation = -12988.558049 eV Core-core repulsion = 10626.236242 eV Total energy + Delta-G solvation = -2362.321807 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.48443 -37.57450 -35.78785 -32.92292 -32.52083 -27.87769 -27.34615 -24.36018 -23.25923 -22.82358 -21.57288 -18.68180 -18.13200 -17.29507 -16.81118 -16.53666 -16.48384 -15.72788 -15.37750 -14.84408 -14.71121 -14.49372 -13.79359 -13.45856 -13.04655 -12.84502 -12.77193 -12.41394 -12.38722 -12.16486 -12.06095 -11.70663 -11.39878 -11.25387 -11.20340 -10.88590 -10.61035 -10.50841 -8.70241 -8.23777 -6.37265 0.57477 1.41401 1.43010 1.54257 1.66981 2.40383 2.60026 2.96603 3.09673 3.76182 3.84704 3.95265 3.97861 4.18921 4.24088 4.30005 4.34093 4.38095 4.49130 4.60480 4.71243 4.73086 4.77461 4.85031 5.00699 5.21750 5.23750 5.37392 5.48581 5.73113 6.10225 6.14048 6.76931 7.32248 8.88131 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.097040 B = 0.003181 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 288.471820 B = 8800.739017 C = 8984.203900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.044 3.956 10 C -0.047 4.047 11 S -0.297 6.297 12 C -0.078 4.078 13 C 0.088 3.912 14 O -0.401 6.401 15 C 0.089 3.911 16 C -0.172 4.172 17 C -0.179 4.179 18 C -0.161 4.161 19 H 0.266 0.734 20 H -0.002 1.002 21 H -0.002 1.002 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.073 -22.129 -0.351 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.005 3.995 10 C -0.195 4.195 11 S -0.070 6.070 12 C -0.226 4.226 13 C 0.011 3.989 14 O -0.321 6.321 15 C 0.013 3.987 16 C -0.191 4.191 17 C -0.216 4.216 18 C -0.198 4.198 19 H 0.075 0.925 20 H 0.017 0.983 21 H 0.017 0.983 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.032 -22.170 -0.348 22.978 hybrid contribution 1.080 1.196 -0.007 1.611 sum 7.112 -20.974 -0.356 22.150 Atomic orbital electron populations 1.70112 1.07955 1.28097 1.50928 1.26029 0.95812 1.03560 0.94346 0.85334 0.78585 0.77846 0.78595 1.19624 1.20693 1.18502 1.21545 0.93727 0.91346 1.51634 0.91457 1.18688 0.93691 0.91292 0.95782 1.23358 1.00178 0.91820 1.04144 1.86784 1.18532 1.03470 1.98235 1.23117 0.98782 0.94510 1.06191 1.21982 0.89404 0.85663 1.01846 1.87821 1.33200 1.15442 1.95646 1.22175 0.95377 0.80148 1.01029 1.22141 1.00092 0.91874 1.04964 1.23170 1.03394 1.03251 0.91811 1.23080 1.03421 0.93251 1.00071 0.92525 0.98342 0.98315 0.90380 0.90365 0.89167 0.89206 0.91917 0.91836 0.92317 0.91999 0.87735 0.88314 0.88018 0.87306 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 7 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.04 2.37 4.98 29.85 0.15 2.51 16 10 C -0.05 -1.99 5.88 71.98 0.42 -1.57 16 11 S -0.30 -10.98 21.74 -56.49 -1.23 -12.21 16 12 C -0.08 -2.19 6.31 71.99 0.45 -1.74 16 13 C 0.09 2.16 5.95 71.99 0.43 2.58 16 14 O -0.40 -9.73 10.34 -148.98 -1.54 -11.27 16 15 C 0.09 1.63 6.22 71.98 0.45 2.08 16 16 C -0.17 -2.81 6.06 -10.79 -0.07 -2.87 16 17 C -0.18 -2.38 10.18 30.60 0.31 -2.07 16 18 C -0.16 -1.87 10.25 30.60 0.31 -1.56 16 19 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 20 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 21 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 22 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 23 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 24 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.06 0.97 7.88 -2.39 -0.02 0.95 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 31 H 0.10 1.24 8.03 -2.39 -0.02 1.22 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -63.87 304.42 3.74 -60.14 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.04 Total: 6.75 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 3.16 Total: -32.66 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.28 Total: -56.63 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.54 Total: -11.27 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -10.98 SS G_CDS: -1.23 Total: -12.21 kcal Total: -63.87 3.74 -60.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388323301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.794 kcal (2) G-P(sol) polarization free energy of solvation -63.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds