Wall clock time and date at job start Sun Mar 29 2020 21:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99881 * 2 1 4 4 H 1.48496 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46880 * 299.99893 * 3 2 1 6 6 H 1.48504 * 109.46924 * 59.99608 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00148 * 159.26895 * 7 2 1 9 9 N 1.36934 * 120.00099 * 339.26715 * 7 2 1 10 10 C 1.46502 * 120.00185 * 321.59637 * 9 7 2 11 11 C 1.52995 * 109.47319 * 270.00429 * 10 9 7 12 12 C 1.53000 * 109.47536 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47454 * 179.97438 * 12 11 10 14 14 F 1.39901 * 109.46933 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00329 * 141.60262 * 9 7 2 16 16 C 1.54267 * 110.03404 * 62.54308 * 15 9 7 17 17 C 1.54964 * 104.16155 * 217.14345 * 16 15 9 18 18 C 1.54891 * 102.78000 * 37.88701 * 17 16 15 19 19 C 1.53885 * 110.02857 * 305.33081 * 15 9 7 20 20 H 0.96997 * 120.00528 * 355.03445 * 1 2 3 21 21 H 1.09000 * 109.46771 * 29.99976 * 10 9 7 22 22 H 1.08998 * 109.46871 * 149.99935 * 10 9 7 23 23 H 1.09002 * 109.47335 * 299.99562 * 11 10 9 24 24 H 1.09004 * 109.47404 * 59.99512 * 11 10 9 25 25 H 1.09002 * 109.46603 * 300.00197 * 12 11 10 26 26 H 1.09004 * 109.47019 * 59.99464 * 12 11 10 27 27 H 1.09000 * 109.47184 * 299.99866 * 13 12 11 28 28 H 1.09004 * 109.47131 * 59.99917 * 13 12 11 29 29 H 1.08997 * 110.02248 * 183.94076 * 15 9 7 30 30 H 1.08998 * 110.48761 * 335.78596 * 16 15 9 31 31 H 1.09000 * 110.48226 * 98.42973 * 16 15 9 32 32 H 1.09006 * 110.71654 * 279.57657 * 17 16 15 33 33 H 1.09000 * 110.92813 * 156.30019 * 17 16 15 34 34 H 1.09000 * 110.48504 * 203.40685 * 18 17 16 35 35 H 1.08996 * 110.59748 * 80.81662 * 18 17 16 36 36 H 1.08996 * 110.02864 * 238.57449 * 19 15 9 37 37 H 1.09001 * 110.02882 * 359.97438 * 19 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0379 -1.2325 -0.3306 9 7 1.3922 -2.3494 0.4209 10 6 0.4699 -2.3101 1.5585 11 6 1.2463 -2.5583 2.8533 12 6 0.2833 -2.5166 4.0415 13 6 1.0596 -2.7655 5.3361 14 9 0.1791 -2.7267 6.4226 15 6 1.6531 -3.6163 -0.2670 16 6 3.1427 -3.9940 -0.1317 17 6 3.4984 -4.6295 -1.4996 18 6 2.7000 -3.7577 -2.5004 19 6 1.3715 -3.4665 -1.7724 20 1 -0.4851 0.8368 0.0727 21 1 -0.0093 -1.3321 1.6041 22 1 -0.2901 -3.0819 1.4369 23 1 1.7256 -3.5362 2.8078 24 1 2.0064 -1.7865 2.9748 25 1 -0.1956 -1.5385 4.0868 26 1 -0.4771 -3.2882 3.9201 27 1 1.5382 -3.7437 5.2905 28 1 1.8203 -1.9942 5.4577 29 1 1.0284 -4.4046 0.1531 30 1 3.7474 -3.1043 0.0440 31 1 3.2816 -4.7160 0.6730 32 1 3.1665 -5.6670 -1.5408 33 1 4.5685 -4.5599 -1.6948 34 1 2.5166 -4.3076 -3.4235 35 1 3.2318 -2.8295 -2.7096 36 1 0.6107 -4.1825 -2.0829 37 1 1.0402 -2.4513 -1.9910 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389250052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:02 Heat of formation + Delta-G solvation = -63.009739 kcal Electronic energy + Delta-G solvation = -16670.911636 eV Core-core repulsion = 13975.838339 eV Total energy + Delta-G solvation = -2695.073298 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.35091 -37.76786 -35.17400 -33.15128 -30.90434 -27.92201 -27.77387 -26.28632 -23.92086 -21.70447 -20.42315 -19.87240 -19.00411 -16.28691 -16.07856 -15.43329 -15.34033 -14.76809 -14.54149 -14.21889 -13.71730 -13.18870 -12.86484 -12.53537 -12.10224 -11.53016 -11.33960 -11.04492 -10.91045 -10.82573 -10.64368 -10.40486 -10.34041 -10.26600 -10.21522 -10.13715 -10.03138 -9.61341 -9.52115 -9.41293 -8.42435 -6.53164 -5.71787 -3.36222 3.35376 3.45283 3.46983 4.49451 4.94902 5.07642 5.20990 5.31026 5.38099 5.45440 5.52500 5.58672 5.79640 5.86323 6.18288 6.25682 6.27696 6.29459 6.33182 6.44173 6.47521 6.56415 6.61034 6.65643 6.77274 6.82313 6.89674 7.05148 7.15421 7.24905 7.43312 7.72920 7.86730 8.56663 9.24108 9.86563 10.45386 11.23381 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.009590 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.072855 B = 2918.877636 C = 4089.909008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.011 3.989 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.245 4.245 8 H 0.060 0.940 9 N -0.579 5.579 10 C 0.148 3.852 11 C -0.132 4.132 12 C -0.148 4.148 13 C 0.060 3.940 14 F -0.228 7.228 15 C 0.170 3.830 16 C -0.135 4.135 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.131 4.131 20 H 0.252 0.748 21 H 0.092 0.908 22 H 0.021 0.979 23 H 0.044 0.956 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.039 0.961 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.227 -6.818 3.094 8.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.189 4.189 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.375 4.375 8 H 0.078 0.922 9 N -0.298 5.298 10 C 0.021 3.979 11 C -0.172 4.172 12 C -0.186 4.186 13 C 0.005 3.995 14 F -0.210 7.210 15 C 0.063 3.937 16 C -0.174 4.174 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.171 4.171 20 H 0.062 0.938 21 H 0.110 0.890 22 H 0.040 0.960 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.066 -6.671 3.036 7.945 hybrid contribution 0.411 0.895 0.100 0.990 sum 3.477 -5.777 3.136 7.436 Atomic orbital electron populations 1.70077 1.05441 1.25776 1.51516 1.25145 0.94894 0.98535 1.00316 0.86471 0.79876 0.84629 0.77281 1.20156 1.21763 1.21573 1.18938 0.93535 0.85481 1.39532 0.92242 1.43950 1.51906 1.03287 1.30684 1.20886 0.90726 1.02247 0.84000 1.22133 0.98692 1.00724 0.95684 1.22129 0.99610 1.02959 0.93944 1.22122 0.91179 1.02783 0.83391 1.92723 1.72266 1.98139 1.57850 1.21047 0.92759 0.88652 0.91274 1.22859 0.99929 0.99671 0.94978 1.22442 0.98656 0.98329 0.96678 1.22252 0.97438 0.98949 0.96891 1.22550 0.95302 1.02504 0.96709 0.93823 0.88995 0.96047 0.93682 0.92075 0.91068 0.91623 0.91299 0.91079 0.93611 0.90890 0.93643 0.92753 0.92993 0.93492 0.92028 0.94208 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.75 11.48 55.49 0.64 -24.11 16 2 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 3 Si 0.89 21.11 29.61 -169.99 -5.03 16.08 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.33 7.75 -15.06 -0.12 -6.44 16 8 H 0.06 1.56 6.94 -52.48 -0.36 1.20 16 9 N -0.58 -13.62 2.38 -164.39 -0.39 -14.01 16 10 C 0.15 3.30 5.28 -4.04 -0.02 3.28 16 11 C -0.13 -2.45 5.54 -26.73 -0.15 -2.60 16 12 C -0.15 -2.37 5.67 -26.73 -0.15 -2.52 16 13 C 0.06 0.84 7.55 37.16 0.28 1.12 16 14 F -0.23 -3.58 17.36 2.25 0.04 -3.54 16 15 C 0.17 3.49 3.42 -66.81 -0.23 3.26 16 16 C -0.13 -2.46 6.43 -25.03 -0.16 -2.62 16 17 C -0.12 -1.96 6.91 -24.70 -0.17 -2.13 16 18 C -0.12 -2.03 6.83 -25.07 -0.17 -2.20 16 19 C -0.13 -2.64 6.25 -25.61 -0.16 -2.80 16 20 H 0.25 6.84 8.32 -40.82 -0.34 6.50 16 21 H 0.09 2.35 5.55 -51.93 -0.29 2.06 16 22 H 0.02 0.46 7.90 -51.93 -0.41 0.05 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.91 7.81 -51.93 -0.41 0.50 16 30 H 0.07 1.48 6.64 -51.93 -0.34 1.13 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.09 2.05 7.17 -51.93 -0.37 1.68 16 LS Contribution 296.77 15.07 4.47 4.47 Total: -1.00 -27.05 296.77 -7.80 -34.85 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.39 Total: -0.30 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.14 Total: -13.44 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.25 Total: -38.12 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.04 Total: -3.54 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.05 -7.80 -34.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389250052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.157 kcal (2) G-P(sol) polarization free energy of solvation -27.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds