Wall clock time and date at job start Sun Mar 29 2020 21:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99881 * 2 1 4 4 H 1.48496 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46880 * 299.99893 * 3 2 1 6 6 H 1.48504 * 109.46924 * 59.99608 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00148 * 159.26895 * 7 2 1 9 9 N 1.36934 * 120.00099 * 339.26715 * 7 2 1 10 10 C 1.46502 * 120.00185 * 321.59637 * 9 7 2 11 11 C 1.52995 * 109.47319 * 270.00429 * 10 9 7 12 12 C 1.53000 * 109.47536 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47454 * 179.97438 * 12 11 10 14 14 F 1.39901 * 109.46933 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00329 * 141.60262 * 9 7 2 16 16 C 1.54267 * 110.03404 * 62.54308 * 15 9 7 17 17 C 1.54964 * 104.16155 * 217.14345 * 16 15 9 18 18 C 1.54891 * 102.78000 * 37.88701 * 17 16 15 19 19 C 1.53885 * 110.02857 * 305.33081 * 15 9 7 20 20 H 0.96997 * 120.00528 * 355.03445 * 1 2 3 21 21 H 1.09000 * 109.46771 * 29.99976 * 10 9 7 22 22 H 1.08998 * 109.46871 * 149.99935 * 10 9 7 23 23 H 1.09002 * 109.47335 * 299.99562 * 11 10 9 24 24 H 1.09004 * 109.47404 * 59.99512 * 11 10 9 25 25 H 1.09002 * 109.46603 * 300.00197 * 12 11 10 26 26 H 1.09004 * 109.47019 * 59.99464 * 12 11 10 27 27 H 1.09000 * 109.47184 * 299.99866 * 13 12 11 28 28 H 1.09004 * 109.47131 * 59.99917 * 13 12 11 29 29 H 1.08997 * 110.02248 * 183.94076 * 15 9 7 30 30 H 1.08998 * 110.48761 * 335.78596 * 16 15 9 31 31 H 1.09000 * 110.48226 * 98.42973 * 16 15 9 32 32 H 1.09006 * 110.71654 * 279.57657 * 17 16 15 33 33 H 1.09000 * 110.92813 * 156.30019 * 17 16 15 34 34 H 1.09000 * 110.48504 * 203.40685 * 18 17 16 35 35 H 1.08996 * 110.59748 * 80.81662 * 18 17 16 36 36 H 1.08996 * 110.02864 * 238.57449 * 19 15 9 37 37 H 1.09001 * 110.02882 * 359.97438 * 19 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0379 -1.2325 -0.3306 9 7 1.3922 -2.3494 0.4209 10 6 0.4699 -2.3101 1.5585 11 6 1.2463 -2.5583 2.8533 12 6 0.2833 -2.5166 4.0415 13 6 1.0596 -2.7655 5.3361 14 9 0.1791 -2.7267 6.4226 15 6 1.6531 -3.6163 -0.2670 16 6 3.1427 -3.9940 -0.1317 17 6 3.4984 -4.6295 -1.4996 18 6 2.7000 -3.7577 -2.5004 19 6 1.3715 -3.4665 -1.7724 20 1 -0.4851 0.8368 0.0727 21 1 -0.0093 -1.3321 1.6041 22 1 -0.2901 -3.0819 1.4369 23 1 1.7256 -3.5362 2.8078 24 1 2.0064 -1.7865 2.9748 25 1 -0.1956 -1.5385 4.0868 26 1 -0.4771 -3.2882 3.9201 27 1 1.5382 -3.7437 5.2905 28 1 1.8203 -1.9942 5.4577 29 1 1.0284 -4.4046 0.1531 30 1 3.7474 -3.1043 0.0440 31 1 3.2816 -4.7160 0.6730 32 1 3.1665 -5.6670 -1.5408 33 1 4.5685 -4.5599 -1.6948 34 1 2.5166 -4.3076 -3.4235 35 1 3.2318 -2.8295 -2.7096 36 1 0.6107 -4.1825 -2.0829 37 1 1.0402 -2.4513 -1.9910 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389250052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:02 Heat of formation + Delta-G solvation = -75.674029 kcal Electronic energy + Delta-G solvation = -16671.460801 eV Core-core repulsion = 13975.838339 eV Total energy + Delta-G solvation = -2695.622462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.53547 -39.38124 -36.74516 -34.79706 -32.74948 -29.39628 -29.26356 -28.04118 -25.58435 -23.21391 -21.97742 -21.27088 -20.71578 -18.13963 -17.33578 -16.97007 -16.65574 -16.45457 -15.99574 -15.81112 -15.15346 -14.81953 -14.54909 -14.03932 -13.68822 -13.25411 -12.97213 -12.76358 -12.52713 -12.43996 -12.24093 -12.03103 -11.77681 -11.72902 -11.71620 -11.59758 -11.50209 -11.23289 -11.19552 -11.08319 -10.42746 -8.48009 -7.70468 -5.39088 1.43243 1.48215 1.56201 2.54119 3.28215 3.54908 3.89824 3.93562 4.02376 4.07946 4.08529 4.29657 4.40192 4.47916 4.71688 4.78798 4.82545 4.88268 4.93710 4.98001 5.00286 5.07251 5.17193 5.24788 5.27162 5.32021 5.36830 5.54563 5.62096 5.65317 5.72055 5.79855 5.93184 6.55696 7.26402 7.97566 8.49205 9.19623 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.009590 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.072855 B = 2918.877636 C = 4089.909008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.038 4.038 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.235 4.235 8 H 0.053 0.947 9 N -0.593 5.593 10 C 0.146 3.854 11 C -0.114 4.114 12 C -0.142 4.142 13 C 0.064 3.936 14 F -0.237 7.237 15 C 0.160 3.840 16 C -0.128 4.128 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.130 4.130 20 H 0.246 0.754 21 H 0.058 0.942 22 H 0.022 0.978 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 -8.625 3.470 10.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.234 4.234 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.224 1.224 6 H -0.218 1.218 7 C -0.366 4.366 8 H 0.071 0.929 9 N -0.313 5.313 10 C 0.020 3.980 11 C -0.154 4.154 12 C -0.181 4.181 13 C 0.009 3.991 14 F -0.218 7.218 15 C 0.053 3.947 16 C -0.167 4.167 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.170 4.170 20 H 0.056 0.944 21 H 0.076 0.924 22 H 0.040 0.960 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.526 -8.498 3.418 10.217 hybrid contribution -0.074 1.390 -0.056 1.393 sum 4.452 -7.108 3.362 9.036 Atomic orbital electron populations 1.70197 1.06594 1.25839 1.53596 1.25719 0.95449 1.01012 1.01268 0.85621 0.79209 0.81523 0.76603 1.19273 1.22420 1.21835 1.19026 0.93175 0.86456 1.37899 0.92927 1.44156 1.51787 1.03779 1.31564 1.20827 0.91103 1.00384 0.85683 1.21839 0.98146 1.00877 0.94563 1.22027 0.99376 1.02400 0.94277 1.22137 0.90632 1.04632 0.81660 1.92708 1.72739 1.98260 1.58133 1.21299 0.94687 0.87497 0.91178 1.22734 0.97336 0.99331 0.97333 1.22411 0.99560 0.98905 0.94074 1.22218 0.95711 0.99031 0.98200 1.22474 0.97344 0.99964 0.97170 0.94439 0.92429 0.95977 0.92082 0.93619 0.92669 0.90956 0.88764 0.90051 0.92738 0.93313 0.91722 0.90338 0.91179 0.90974 0.93676 0.92904 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.12 11.48 21.65 0.25 -52.87 16 2 C -0.04 -2.06 4.96 84.86 0.42 -1.64 16 3 Si 0.94 44.33 29.61 68.60 2.03 46.37 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.23 -12.32 7.75 84.03 0.65 -11.67 16 8 H 0.05 2.81 6.94 -2.91 -0.02 2.79 16 9 N -0.59 -28.09 2.38 -674.00 -1.60 -29.70 16 10 C 0.15 6.60 5.28 86.38 0.46 7.05 16 11 C -0.11 -4.13 5.54 30.59 0.17 -3.96 16 12 C -0.14 -4.39 5.67 30.59 0.17 -4.22 16 13 C 0.06 1.63 7.55 71.98 0.54 2.18 16 14 F -0.24 -6.96 17.36 44.97 0.78 -6.18 16 15 C 0.16 6.40 3.42 45.72 0.16 6.55 16 16 C -0.13 -4.37 6.43 31.70 0.20 -4.17 16 17 C -0.11 -3.15 6.91 31.91 0.22 -2.93 16 18 C -0.11 -3.71 6.83 31.67 0.22 -3.49 16 19 C -0.13 -5.16 6.25 31.32 0.20 -4.97 16 20 H 0.25 13.92 8.32 -92.71 -0.77 13.15 16 21 H 0.06 3.05 5.55 -2.39 -0.01 3.03 16 22 H 0.02 0.96 7.90 -2.39 -0.02 0.94 16 23 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.05 2.06 7.81 -2.39 -0.02 2.04 16 30 H 0.05 1.90 6.64 -2.39 -0.02 1.89 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.04 1.86 7.17 -2.39 -0.02 1.84 16 Total: -1.00 -59.17 296.77 5.88 -53.29 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.01 Total: 10.35 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 3.41 Total: -21.26 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -1.36 Total: -82.56 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.78 Total: -6.18 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.37 kcal Total: -59.17 5.88 -53.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389250052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.380 kcal (2) G-P(sol) polarization free energy of solvation -59.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds