Wall clock time and date at job start Sun Mar 29 2020 21:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99695 * 2 1 4 4 H 1.48497 * 109.47149 * 269.99646 * 3 2 1 5 5 H 1.48504 * 109.47101 * 29.99967 * 3 2 1 6 6 H 1.48493 * 109.47009 * 149.99782 * 3 2 1 7 7 C 1.37872 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99884 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00039 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.53881 * 60.09226 * 9 7 2 11 11 C 1.53124 * 109.50007 * 299.99707 * 9 7 2 12 12 C 1.53126 * 109.15878 * 182.40592 * 11 9 7 13 13 C 1.53037 * 109.27801 * 57.65645 * 12 11 9 14 14 N 1.46854 * 109.51886 * 300.81620 * 13 12 11 15 15 C 1.46897 * 110.99665 * 185.84309 * 14 13 12 16 16 C 1.52998 * 109.47268 * 293.95495 * 15 14 13 17 17 C 1.53001 * 109.47409 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47409 * 180.02562 * 17 16 15 19 19 F 1.39896 * 109.47337 * 179.97438 * 18 17 16 20 20 C 1.46844 * 111.19703 * 61.74789 * 14 13 12 21 21 H 0.96998 * 120.00706 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.52745 * 62.49921 * 11 9 7 23 23 H 1.08999 * 109.52030 * 302.30376 * 11 9 7 24 24 H 1.09000 * 109.49775 * 177.59563 * 12 11 9 25 25 H 1.09002 * 109.50346 * 297.67261 * 12 11 9 26 26 H 1.08994 * 109.46593 * 60.83220 * 13 12 11 27 27 H 1.09004 * 109.45972 * 180.81661 * 13 12 11 28 28 H 1.08998 * 109.47712 * 53.95369 * 15 14 13 29 29 H 1.09003 * 109.47441 * 173.95685 * 15 14 13 30 30 H 1.08999 * 109.47139 * 300.00315 * 16 15 14 31 31 H 1.09004 * 109.47207 * 59.99992 * 16 15 14 32 32 H 1.08999 * 109.47199 * 300.00243 * 17 16 15 33 33 H 1.09004 * 109.46972 * 59.99813 * 17 16 15 34 34 H 1.08999 * 109.47139 * 300.00280 * 18 17 16 35 35 H 1.09004 * 109.47207 * 59.99957 * 18 17 16 36 36 H 1.09002 * 109.46133 * 58.27161 * 20 14 13 37 37 H 1.09002 * 109.46165 * 178.24800 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8757 -0.6824 0.8910 11 6 4.0231 -0.4715 -1.2493 12 6 5.5532 -0.5284 -1.2716 13 6 6.0049 -1.9902 -1.2405 14 7 5.4908 -2.6369 -0.0263 15 6 6.0188 -4.0012 0.1072 16 6 5.4749 -4.8719 -1.0272 17 6 6.0243 -6.2930 -0.8877 18 6 5.4809 -7.1636 -2.0225 19 9 5.9837 -8.4628 -1.8953 20 6 4.0225 -2.6365 -0.0056 21 1 -0.4851 0.8400 -0.0004 22 1 3.6976 0.5685 -1.2278 23 1 3.6275 -0.9596 -2.1400 24 1 5.9217 -0.0528 -2.1805 25 1 5.9495 -0.0057 -0.4010 26 1 5.6198 -2.5082 -2.1187 27 1 7.0941 -2.0338 -1.2416 28 1 7.1073 -3.9762 0.0561 29 1 5.7096 -4.4183 1.0656 30 1 4.3864 -4.8969 -0.9761 31 1 5.7841 -4.4548 -1.9856 32 1 7.1128 -6.2684 -0.9385 33 1 5.7147 -6.7098 0.0707 34 1 4.3924 -7.1883 -1.9721 35 1 5.7909 -6.7466 -2.9807 36 1 3.6467 -3.1515 -0.8897 37 1 3.6718 -3.1493 0.8900 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397666177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:15 Heat of formation + Delta-G solvation = -69.471618 kcal Electronic energy + Delta-G solvation = -16475.268539 eV Core-core repulsion = 13779.915034 eV Total energy + Delta-G solvation = -2695.353506 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.70959 -38.85107 -35.37102 -33.13399 -31.82691 -30.30299 -27.76726 -24.97212 -24.35606 -22.12532 -21.49911 -20.85505 -18.58105 -16.72274 -16.53871 -15.87426 -15.71283 -14.93334 -14.84288 -14.26041 -13.99933 -13.72853 -13.35890 -12.92546 -12.53226 -12.33516 -12.02529 -11.87255 -11.46000 -11.16649 -11.10715 -11.05044 -10.90678 -10.65934 -10.29626 -10.06803 -9.92553 -9.67341 -9.10612 -8.92927 -8.51087 -7.78193 -6.06718 -4.05841 3.28648 3.40157 3.43617 4.32651 4.42963 4.47857 4.61032 4.82020 5.00840 5.08492 5.24910 5.39347 5.42925 5.55369 5.57065 5.63257 5.69173 5.81665 5.92416 5.97381 6.09797 6.16466 6.24722 6.31230 6.35256 6.49941 6.61479 6.80970 6.83908 7.20922 7.40861 7.61224 7.65774 7.87091 8.52362 8.96235 9.56332 11.06553 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.038165 B = 0.005958 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.476434 B = 4698.325467 C = 5149.216752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.019 3.981 10 H 0.035 0.965 11 C -0.122 4.122 12 C -0.121 4.121 13 C 0.061 3.939 14 N -0.541 5.541 15 C 0.058 3.942 16 C -0.161 4.161 17 C -0.146 4.146 18 C 0.059 3.941 19 F -0.224 7.224 20 C 0.075 3.925 21 H 0.263 0.737 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.872 -8.273 -3.414 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.552 4.552 8 H 0.090 0.910 9 C -0.001 4.001 10 H 0.053 0.947 11 C -0.160 4.160 12 C -0.159 4.159 13 C -0.067 4.067 14 N -0.264 5.264 15 C -0.070 4.070 16 C -0.200 4.200 17 C -0.185 4.185 18 C 0.004 3.996 19 F -0.205 7.205 20 C -0.052 4.052 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.880 -7.904 -2.995 15.406 hybrid contribution 0.034 0.439 -0.833 0.942 sum 12.914 -7.464 -3.828 15.399 Atomic orbital electron populations 1.69899 1.06313 1.26936 1.50972 1.24983 0.94656 0.99057 0.94407 0.86822 0.80011 0.83465 0.77826 1.20754 1.22637 1.18830 1.20999 0.88810 0.94448 1.50955 0.91009 1.19175 0.95937 0.91281 0.93679 0.94734 1.22023 0.92640 1.00212 1.01101 1.21666 0.98096 0.95317 1.00782 1.22000 0.98376 0.95338 0.90963 1.62227 1.10556 1.15979 1.37598 1.22162 0.99262 0.87997 0.97605 1.22240 1.02220 0.94451 1.01069 1.22085 1.01614 0.95745 0.99013 1.22074 0.99435 0.77889 1.00219 1.92747 1.89663 1.40633 1.97452 1.22110 0.83828 0.99522 0.99764 0.92700 0.93586 0.92624 0.92874 0.91862 0.95199 0.92020 0.91424 0.90845 0.90777 0.91668 0.91021 0.90719 0.90666 0.90972 0.95194 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 2 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 3 Si 0.89 22.10 24.35 -169.99 -4.14 17.96 16 4 H -0.28 -6.79 6.89 56.52 0.39 -6.40 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.26 -6.33 6.53 56.52 0.37 -5.97 16 7 C -0.51 -14.28 9.15 -34.44 -0.32 -14.59 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C 0.02 0.43 1.85 -91.69 -0.17 0.26 16 10 H 0.03 0.86 7.21 -51.93 -0.37 0.48 16 11 C -0.12 -2.62 4.73 -26.60 -0.13 -2.75 16 12 C -0.12 -2.10 6.09 -26.65 -0.16 -2.27 16 13 C 0.06 0.95 5.05 -3.83 -0.02 0.93 16 14 N -0.54 -9.03 4.86 -234.67 -1.14 -10.17 16 15 C 0.06 0.77 5.36 -3.83 -0.02 0.74 16 16 C -0.16 -1.88 4.52 -26.73 -0.12 -2.00 16 17 C -0.15 -1.45 5.67 -26.73 -0.15 -1.60 16 18 C 0.06 0.58 7.55 37.16 0.28 0.86 16 19 F -0.22 -2.70 17.36 2.25 0.04 -2.66 16 20 C 0.07 1.47 4.06 -3.84 -0.02 1.45 16 21 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 22 H 0.05 1.05 3.34 -51.93 -0.17 0.88 16 23 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.03 0.46 6.75 -51.93 -0.35 0.10 16 27 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 28 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.97 6.51 -51.93 -0.34 0.64 16 31 H 0.06 0.76 6.68 -51.93 -0.35 0.41 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.59 6.61 -51.93 -0.34 0.25 16 37 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 LS Contribution 283.30 15.07 4.27 4.27 Total: -1.00 -29.81 283.30 -7.28 -37.09 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -6.17 Total: -2.62 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -0.92 Total: -17.04 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.37 Total: -37.00 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.96 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.81 -7.28 -37.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397666177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.384 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds