Wall clock time and date at job start Sun Mar 29 2020 21:31:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42896 * 114.00132 * 2 1
4 4 C 1.53009 * 109.57518 * 62.94797 * 3 2 1
5 5 O 1.42897 * 109.46522 * 59.03111 * 4 3 2
6 6 C 1.53123 * 109.52746 * 302.79139 * 3 2 1
7 7 C 1.53033 * 109.27730 * 297.74815 * 6 3 2
8 8 N 1.46852 * 109.52076 * 300.81844 * 7 6 3
9 9 C 1.46903 * 110.99699 * 185.83882 * 8 7 6
10 10 C 1.50696 * 109.46887 * 170.00229 * 9 8 7
11 11 H 1.08004 * 120.00276 * 359.97438 * 10 9 8
12 12 C 1.37878 * 120.00043 * 180.02562 * 10 9 8
13 13 N 1.31516 * 119.99902 * 0.02562 * 12 10 9
14 14 Si 1.86802 * 120.00123 * 179.97438 * 12 10 9
15 15 H 1.48499 * 109.47124 * 359.97438 * 14 12 10
16 16 H 1.48496 * 109.46978 * 120.00182 * 14 12 10
17 17 H 1.48506 * 109.47066 * 239.99944 * 14 12 10
18 18 C 1.46849 * 111.19890 * 61.74474 * 8 7 6
19 19 C 1.53034 * 109.52238 * 298.25633 * 18 8 7
20 20 H 1.09001 * 109.47107 * 66.04041 * 1 2 3
21 21 H 1.08996 * 109.47248 * 186.03989 * 1 2 3
22 22 H 1.09001 * 109.46939 * 306.04392 * 1 2 3
23 23 H 1.08996 * 109.47481 * 179.03209 * 4 3 2
24 24 H 1.08998 * 109.46529 * 299.03899 * 4 3 2
25 25 H 0.96702 * 113.99603 * 179.97438 * 5 4 3
26 26 H 1.09001 * 109.50533 * 177.80707 * 6 3 2
27 27 H 1.08998 * 109.50273 * 57.68673 * 6 3 2
28 28 H 1.09008 * 109.46465 * 60.83205 * 7 6 3
29 29 H 1.09000 * 109.46525 * 180.81341 * 7 6 3
30 30 H 1.09002 * 109.47404 * 289.99840 * 9 8 7
31 31 H 1.08997 * 109.47432 * 49.99775 * 9 8 7
32 32 H 0.97000 * 119.99823 * 180.02562 * 13 12 10
33 33 H 1.09000 * 109.45980 * 58.27144 * 18 8 7
34 34 H 1.08994 * 109.46314 * 178.24132 * 18 8 7
35 35 H 1.09000 * 109.50556 * 179.12309 * 19 18 8
36 36 H 1.09002 * 109.50460 * 299.20280 * 19 18 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 1.6198 2.0404 1.2839
5 8 2.0760 1.2969 2.4158
6 6 1.5044 2.0909 -1.2132
7 6 1.9502 1.3834 -2.4948
8 7 3.4159 1.2955 -2.5224
9 6 3.8863 0.7467 -3.8013
10 6 5.3829 0.8980 -3.8926
11 1 5.9298 1.3564 -3.0820
12 6 6.0538 0.4521 -5.0116
13 7 5.3877 -0.1048 -5.9994
14 14 7.9089 0.6402 -5.1252
15 1 8.4164 1.2949 -3.8927
16 1 8.5344 -0.6989 -5.2685
17 1 8.2504 1.4749 -6.3050
18 6 3.9219 0.5055 -1.3927
19 6 3.5348 1.1868 -0.0782
20 1 -0.3633 0.4173 -0.9391
21 1 -0.3633 -1.0219 0.1081
22 1 -0.3633 0.6047 0.8310
23 1 2.0780 3.0294 1.2902
24 1 0.5355 2.1419 1.3289
25 1 1.8631 1.7051 3.2662
26 1 1.9174 3.0994 -1.1918
27 1 0.4160 2.1421 -1.1856
28 1 1.5257 0.3798 -2.5222
29 1 1.6040 1.9479 -3.3606
30 1 3.6236 -0.3095 -3.8621
31 1 3.4157 1.2860 -4.6233
32 1 5.8597 -0.4188 -6.7864
33 1 3.4880 -0.4939 -1.4253
34 1 5.0074 0.4323 -1.4580
35 1 3.8971 0.5920 0.7604
36 1 3.9803 2.1808 -0.0385
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000401742310.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:31:18
Heat of formation + Delta-G solvation = -92.874792 kcal
Electronic energy + Delta-G solvation = -17080.690672 eV
Core-core repulsion = 14371.949539 eV
Total energy + Delta-G solvation = -2708.741133 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.146 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.76828 -36.65669 -35.94682 -33.04099 -31.62531 -30.45834 -27.79539 -26.61922
-25.51788 -22.63768 -22.27996 -20.56372 -19.20661 -17.33952 -16.22730 -16.07556
-15.66601 -15.13074 -14.99639 -14.25727 -13.88889 -13.64643 -13.36014 -12.92783
-12.41632 -12.29391 -12.01360 -11.86107 -11.72185 -11.15703 -10.92892 -10.76561
-10.55743 -10.45798 -10.31056 -10.12736 -9.74109 -9.68271 -9.22224 -9.06316
-8.38466 -7.11903 -5.97593 -3.98424 3.34620 3.41672 3.46937 3.85268
4.28990 4.47284 4.88491 4.95404 5.03863 5.21280 5.22728 5.38055
5.44597 5.49803 5.55690 5.67898 5.77332 5.95876 5.97408 6.11775
6.24818 6.37264 6.41598 6.49022 6.81487 6.89161 7.37920 7.45165
7.46347 7.58200 7.87032 8.16890 8.29996 8.63549 9.09834 9.65566
11.13492
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.044642 B = 0.006468 C = 0.006032
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 627.060231 B = 4327.680607 C = 4641.088256
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.362 6.362
3 C 0.121 3.879
4 C 0.053 3.947
5 O -0.558 6.558
6 C -0.138 4.138
7 C 0.061 3.939
8 N -0.537 5.537
9 C 0.193 3.807
10 C -0.504 4.504
11 H 0.064 0.936
12 C 0.054 3.946
13 N -0.900 5.900
14 Si 0.897 3.103
15 H -0.272 1.272
16 H -0.285 1.285
17 H -0.285 1.285
18 C 0.067 3.933
19 C -0.096 4.096
20 H 0.041 0.959
21 H 0.080 0.920
22 H 0.037 0.963
23 H 0.054 0.946
24 H 0.043 0.957
25 H 0.371 0.629
26 H 0.079 0.921
27 H 0.061 0.939
28 H 0.027 0.973
29 H 0.067 0.933
30 H -0.009 1.009
31 H 0.029 0.971
32 H 0.260 0.740
33 H 0.028 0.972
34 H 0.083 0.917
35 H 0.072 0.928
36 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.749 4.225 13.531 17.204
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.281 6.281
3 C 0.081 3.919
4 C -0.026 4.026
5 O -0.362 6.362
6 C -0.176 4.176
7 C -0.068 4.068
8 N -0.262 5.262
9 C 0.068 3.932
10 C -0.543 4.543
11 H 0.082 0.918
12 C -0.147 4.147
13 N -0.540 5.540
14 Si 0.725 3.275
15 H -0.196 1.196
16 H -0.211 1.211
17 H -0.211 1.211
18 C -0.062 4.062
19 C -0.133 4.133
20 H 0.060 0.940
21 H 0.098 0.902
22 H 0.055 0.945
23 H 0.073 0.927
24 H 0.061 0.939
25 H 0.217 0.783
26 H 0.098 0.902
27 H 0.080 0.920
28 H 0.045 0.955
29 H 0.086 0.914
30 H 0.009 0.991
31 H 0.047 0.953
32 H 0.069 0.931
33 H 0.047 0.953
34 H 0.101 0.899
35 H 0.091 0.909
36 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -9.200 4.048 12.912 16.363
hybrid contribution 0.084 -0.092 0.120 0.173
sum -9.116 3.956 13.032 16.389
Atomic orbital electron populations
1.22716 0.82593 1.02163 0.99535 1.88044 1.18516 1.26882 1.94642
1.21648 0.95727 0.83359 0.91169 1.22840 0.97518 0.94813 0.87379
1.86604 1.82208 1.51551 1.15811 1.22143 0.99748 1.00499 0.95205
1.21857 0.90881 0.98281 0.95732 1.62090 1.06161 1.52998 1.04983
1.19694 0.95867 0.92944 0.84703 1.21220 0.91819 1.38275 1.02977
0.91788 1.24999 0.98584 0.95428 0.95712 1.69977 1.35559 1.41070
1.07362 0.86453 0.85396 0.77638 0.78008 1.19649 1.21135 1.21077
1.21879 1.01094 0.94166 0.89028 1.21560 0.90959 1.02045 0.98777
0.94030 0.90165 0.94490 0.92740 0.93859 0.78295 0.90221 0.91999
0.95458 0.91435 0.99143 0.95327 0.93052 0.95341 0.89902 0.90897
0.90507
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.34 10.15 101.05 1.03 1.36 16
2 O -0.36 -6.05 9.08 -45.48 -0.41 -6.46 16
3 C 0.12 1.85 0.49 -90.49 -0.04 1.80 16
4 C 0.05 0.64 5.65 37.16 0.21 0.85 16
5 O -0.56 -6.89 12.96 -45.48 -0.59 -7.48 16
6 C -0.14 -2.06 4.50 -26.65 -0.12 -2.18 16
7 C 0.06 1.16 5.33 -3.83 -0.02 1.14 16
8 N -0.54 -12.08 4.65 -236.11 -1.10 -13.18 16
9 C 0.19 5.21 4.72 -4.98 -0.02 5.19 16
10 C -0.50 -14.49 8.43 -34.44 -0.29 -14.79 16
11 H 0.06 1.82 7.12 -52.48 -0.37 1.44 16
12 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16
13 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16
14 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16
15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16
16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
17 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16
18 C 0.07 1.41 5.16 -3.83 -0.02 1.39 16
19 C -0.10 -1.66 4.94 -26.65 -0.13 -1.79 16
20 H 0.04 0.50 6.67 -51.93 -0.35 0.15 16
21 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
22 H 0.04 0.40 6.24 -51.93 -0.32 0.08 16
23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16
24 H 0.04 0.45 6.53 -51.93 -0.34 0.11 16
25 H 0.37 2.64 9.12 45.56 0.42 3.06 16
26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16
27 H 0.06 0.78 6.52 -51.93 -0.34 0.44 16
28 H 0.03 0.54 7.76 -51.92 -0.40 0.14 16
29 H 0.07 1.25 8.01 -51.93 -0.42 0.83 16
30 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16
31 H 0.03 0.82 7.99 -51.93 -0.41 0.40 16
32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
33 H 0.03 0.64 7.76 -51.93 -0.40 0.24 16
34 H 0.08 1.87 6.70 -51.93 -0.35 1.52 16
35 H 0.07 1.26 7.79 -51.93 -0.40 0.85 16
36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
LS Contribution 282.88 15.07 4.26 4.26
Total: -1.00 -32.69 282.88 -6.58 -39.26
By element:
Atomic # 1 Polarization: 3.68 SS G_CDS: -4.94 Total: -1.27 kcal
Atomic # 6 Polarization: -6.06 SS G_CDS: 0.49 Total: -5.57 kcal
Atomic # 7 Polarization: -39.38 SS G_CDS: -0.36 Total: -39.74 kcal
Atomic # 8 Polarization: -12.93 SS G_CDS: -1.00 Total: -13.94 kcal
Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -32.69 -6.58 -39.26 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000401742310.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.611 kcal
(2) G-P(sol) polarization free energy of solvation -32.688 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.298 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.875 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds