Wall clock time and date at job start Sun Mar 29 2020 21:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00132 * 2 1 4 4 C 1.53009 * 109.57518 * 62.94797 * 3 2 1 5 5 O 1.42897 * 109.46522 * 59.03111 * 4 3 2 6 6 C 1.53123 * 109.52746 * 302.79139 * 3 2 1 7 7 C 1.53033 * 109.27730 * 297.74815 * 6 3 2 8 8 N 1.46852 * 109.52076 * 300.81844 * 7 6 3 9 9 C 1.46903 * 110.99699 * 185.83882 * 8 7 6 10 10 C 1.50696 * 109.46887 * 170.00229 * 9 8 7 11 11 H 1.08004 * 120.00276 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00043 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99902 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00123 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47124 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.46978 * 120.00182 * 14 12 10 17 17 H 1.48506 * 109.47066 * 239.99944 * 14 12 10 18 18 C 1.46849 * 111.19890 * 61.74474 * 8 7 6 19 19 C 1.53034 * 109.52238 * 298.25633 * 18 8 7 20 20 H 1.09001 * 109.47107 * 66.04041 * 1 2 3 21 21 H 1.08996 * 109.47248 * 186.03989 * 1 2 3 22 22 H 1.09001 * 109.46939 * 306.04392 * 1 2 3 23 23 H 1.08996 * 109.47481 * 179.03209 * 4 3 2 24 24 H 1.08998 * 109.46529 * 299.03899 * 4 3 2 25 25 H 0.96702 * 113.99603 * 179.97438 * 5 4 3 26 26 H 1.09001 * 109.50533 * 177.80707 * 6 3 2 27 27 H 1.08998 * 109.50273 * 57.68673 * 6 3 2 28 28 H 1.09008 * 109.46465 * 60.83205 * 7 6 3 29 29 H 1.09000 * 109.46525 * 180.81341 * 7 6 3 30 30 H 1.09002 * 109.47404 * 289.99840 * 9 8 7 31 31 H 1.08997 * 109.47432 * 49.99775 * 9 8 7 32 32 H 0.97000 * 119.99823 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.45980 * 58.27144 * 18 8 7 34 34 H 1.08994 * 109.46314 * 178.24132 * 18 8 7 35 35 H 1.09000 * 109.50556 * 179.12309 * 19 18 8 36 36 H 1.09002 * 109.50460 * 299.20280 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6198 2.0404 1.2839 5 8 2.0760 1.2969 2.4158 6 6 1.5044 2.0909 -1.2132 7 6 1.9502 1.3834 -2.4948 8 7 3.4159 1.2955 -2.5224 9 6 3.8863 0.7467 -3.8013 10 6 5.3829 0.8980 -3.8926 11 1 5.9298 1.3564 -3.0820 12 6 6.0538 0.4521 -5.0116 13 7 5.3877 -0.1048 -5.9994 14 14 7.9089 0.6402 -5.1252 15 1 8.4164 1.2949 -3.8927 16 1 8.5344 -0.6989 -5.2685 17 1 8.2504 1.4749 -6.3050 18 6 3.9219 0.5055 -1.3927 19 6 3.5348 1.1868 -0.0782 20 1 -0.3633 0.4173 -0.9391 21 1 -0.3633 -1.0219 0.1081 22 1 -0.3633 0.6047 0.8310 23 1 2.0780 3.0294 1.2902 24 1 0.5355 2.1419 1.3289 25 1 1.8631 1.7051 3.2662 26 1 1.9174 3.0994 -1.1918 27 1 0.4160 2.1421 -1.1856 28 1 1.5257 0.3798 -2.5222 29 1 1.6040 1.9479 -3.3606 30 1 3.6236 -0.3095 -3.8621 31 1 3.4157 1.2860 -4.6233 32 1 5.8597 -0.4188 -6.7864 33 1 3.4880 -0.4939 -1.4253 34 1 5.0074 0.4323 -1.4580 35 1 3.8971 0.5920 0.7604 36 1 3.9803 2.1808 -0.0385 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401742310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:18 Heat of formation + Delta-G solvation = -119.062997 kcal Electronic energy + Delta-G solvation = -17081.826278 eV Core-core repulsion = 14371.949539 eV Total energy + Delta-G solvation = -2709.876739 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.02990 -38.11367 -36.99210 -35.02341 -33.25927 -31.92253 -29.51447 -27.65057 -27.18078 -24.29337 -23.92490 -22.16549 -20.52986 -18.53132 -18.16364 -17.37905 -16.90121 -16.60534 -16.30789 -15.93727 -15.52112 -15.17528 -14.61021 -14.22772 -14.13905 -13.72010 -13.51598 -13.26398 -13.15849 -12.88017 -12.57223 -12.51044 -12.19250 -12.11046 -11.98287 -11.51940 -11.42280 -11.00584 -10.78401 -10.62471 -10.34920 -9.02105 -8.21225 -6.31619 1.40749 1.41364 1.55539 2.40279 2.80818 3.10833 3.28635 3.39927 3.76741 3.79429 4.13571 4.28567 4.32966 4.47188 4.48838 4.53926 4.56498 4.61215 4.70517 4.83352 4.86663 4.92141 4.99332 5.07733 5.12913 5.16582 5.31964 5.35938 5.65149 6.04658 6.32585 6.39942 6.64750 6.84784 6.97318 7.38164 8.90577 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.044642 B = 0.006468 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.060231 B = 4327.680607 C = 4641.088256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.396 6.396 3 C 0.115 3.885 4 C 0.060 3.940 5 O -0.581 6.581 6 C -0.128 4.128 7 C 0.057 3.943 8 N -0.538 5.538 9 C 0.207 3.793 10 C -0.523 4.523 11 H 0.064 0.936 12 C -0.001 4.001 13 N -0.937 5.937 14 Si 0.973 3.027 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.276 1.276 18 C 0.072 3.928 19 C -0.088 4.088 20 H 0.045 0.955 21 H 0.086 0.914 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.394 0.606 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.013 0.987 29 H 0.067 0.933 30 H -0.046 1.046 31 H 0.006 0.994 32 H 0.265 0.735 33 H 0.005 0.995 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 5.703 15.244 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.316 6.316 3 C 0.075 3.925 4 C -0.018 4.018 5 O -0.388 6.388 6 C -0.166 4.166 7 C -0.071 4.071 8 N -0.262 5.262 9 C 0.081 3.919 10 C -0.561 4.561 11 H 0.082 0.918 12 C -0.199 4.199 13 N -0.577 5.577 14 Si 0.797 3.203 15 H -0.186 1.186 16 H -0.205 1.205 17 H -0.201 1.201 18 C -0.057 4.057 19 C -0.125 4.125 20 H 0.063 0.937 21 H 0.105 0.895 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.244 0.756 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.031 0.969 29 H 0.085 0.915 30 H -0.028 1.028 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.023 0.977 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.470 5.544 14.664 18.315 hybrid contribution 0.093 -0.608 -0.408 0.738 sum -9.376 4.937 14.256 17.762 Atomic orbital electron populations 1.22901 0.80643 1.03288 1.00638 1.87999 1.20777 1.27857 1.94958 1.21685 0.93913 0.83503 0.93359 1.22701 0.99034 0.94516 0.85528 1.86541 1.82607 1.52513 1.17175 1.22087 1.01743 1.00187 0.92544 1.21978 0.88350 0.98195 0.98564 1.62051 1.08715 1.52210 1.03265 1.19364 0.95488 0.90516 0.86549 1.21502 0.92708 1.38601 1.03278 0.91766 1.25972 1.04080 0.94706 0.95118 1.70106 1.37857 1.41740 1.08029 0.85286 0.78658 0.77905 0.78477 1.18593 1.20465 1.20120 1.21808 0.99490 0.93574 0.90787 1.21467 0.93417 1.01883 0.95761 0.93663 0.89527 0.92192 0.90966 0.91456 0.75609 0.89036 0.88780 0.96899 0.91450 1.02836 0.97606 0.92661 0.97672 0.92174 0.90930 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.15 113.37 1.15 1.64 16 2 O -0.40 -12.71 9.08 -139.18 -1.26 -13.97 16 3 C 0.11 3.27 0.49 -10.71 -0.01 3.26 16 4 C 0.06 1.21 5.65 71.99 0.41 1.62 16 5 O -0.58 -12.43 12.96 -139.18 -1.80 -14.23 16 6 C -0.13 -3.52 4.50 30.65 0.14 -3.38 16 7 C 0.06 2.18 5.33 86.32 0.46 2.64 16 8 N -0.54 -24.82 4.65 -900.92 -4.19 -29.00 16 9 C 0.21 11.75 4.72 85.56 0.40 12.15 16 10 C -0.52 -30.89 8.43 25.60 0.22 -30.67 16 11 H 0.06 3.71 7.12 -2.91 -0.02 3.69 16 12 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 13 N -0.94 -58.20 13.29 21.45 0.28 -57.91 16 14 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 15 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 C 0.07 3.12 5.16 86.32 0.45 3.56 16 19 C -0.09 -2.96 4.94 30.65 0.15 -2.80 16 20 H 0.04 0.99 6.67 -2.39 -0.02 0.97 16 21 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.06 1.09 6.24 -2.39 -0.01 1.07 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.07 1.05 6.53 -2.39 -0.02 1.04 16 25 H 0.39 4.18 9.12 -74.06 -0.68 3.51 16 26 H 0.09 2.34 8.14 -2.39 -0.02 2.33 16 27 H 0.09 2.02 6.52 -2.39 -0.02 2.01 16 28 H 0.01 0.52 7.76 -2.38 -0.02 0.50 16 29 H 0.07 2.52 8.01 -2.39 -0.02 2.50 16 30 H -0.05 -2.88 8.12 -2.39 -0.02 -2.90 16 31 H 0.01 0.35 7.99 -2.39 -0.02 0.33 16 32 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.00 0.24 7.76 -2.39 -0.02 0.22 16 34 H 0.06 2.82 6.70 -2.39 -0.02 2.81 16 35 H 0.07 2.45 7.79 -2.39 -0.02 2.43 16 36 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -72.45 282.88 -0.73 -73.18 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.39 Total: 6.03 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 3.83 Total: -11.59 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -3.90 Total: -86.92 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -3.07 Total: -28.20 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.45 -0.73 -73.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401742310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.883 kcal (2) G-P(sol) polarization free energy of solvation -72.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds