Wall clock time and date at job start Sun Mar 29 2020 21:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47061 * 2 1 4 4 C 1.42896 * 113.99688 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46969 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.54122 * 304.89202 * 5 4 3 7 7 C 1.53096 * 109.50989 * 184.78652 * 5 4 3 8 8 N 1.47016 * 109.25835 * 183.21854 * 7 5 4 9 9 C 1.46905 * 110.99651 * 182.39146 * 8 7 5 10 10 C 1.50696 * 109.46934 * 302.40706 * 9 8 7 11 11 H 1.07999 * 120.00202 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99746 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99573 * 0.27650 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47035 * 60.00183 * 14 12 10 16 16 H 1.48503 * 109.46845 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47237 * 299.99939 * 14 12 10 18 18 C 1.47013 * 110.75580 * 58.61442 * 8 7 5 19 19 C 1.53105 * 109.25566 * 301.38349 * 18 8 7 20 20 O 1.43017 * 109.25888 * 56.84818 * 19 18 8 21 21 H 1.09004 * 109.47354 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47103 * 299.99828 * 1 2 3 23 23 H 1.09002 * 109.47199 * 60.00213 * 1 2 3 24 24 H 1.09005 * 109.46953 * 239.99968 * 2 1 3 25 25 H 1.09000 * 109.47237 * 120.00338 * 2 1 3 26 26 H 1.09003 * 109.47250 * 60.00890 * 4 3 2 27 27 H 1.09001 * 109.47824 * 299.99807 * 4 3 2 28 28 H 1.09000 * 109.50976 * 63.27949 * 7 5 4 29 29 H 1.09003 * 109.50347 * 303.14816 * 7 5 4 30 30 H 1.09000 * 109.46374 * 182.41039 * 9 8 7 31 31 H 1.08999 * 109.46732 * 62.41112 * 9 8 7 32 32 H 0.97001 * 120.00651 * 359.71956 * 13 12 10 33 33 H 1.09001 * 109.50909 * 61.31452 * 18 8 7 34 34 H 1.08993 * 109.50923 * 181.40810 * 18 8 7 35 35 H 1.09004 * 109.50528 * 176.78199 * 19 18 8 36 36 H 1.08998 * 109.50851 * 296.87036 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 1 3.3520 3.4424 -0.8414 7 6 5.3466 3.0616 -0.1186 8 7 5.7259 4.4798 -0.0399 9 6 7.1758 4.6470 -0.2078 10 6 7.8989 3.8449 0.8432 11 1 7.3377 3.2689 1.5641 12 6 9.2771 3.8472 0.8852 13 7 9.9603 4.5538 0.0113 14 14 10.1735 2.8535 2.1884 15 1 9.8214 1.4180 2.0455 16 1 11.6391 3.0225 2.0186 17 1 9.7727 3.3297 3.5367 18 6 5.2705 5.0714 1.2265 19 6 3.7499 4.9280 1.3327 20 8 3.3975 3.5463 1.2229 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8340 0.9765 -0.8893 27 1 3.8333 0.9767 0.8908 28 1 5.6710 2.6505 -1.0746 29 1 5.8214 2.5122 0.6944 30 1 7.4344 5.7006 -0.1027 31 1 7.4695 4.2977 -1.1976 32 1 9.4948 5.0701 -0.6652 33 1 5.7440 4.5541 2.0610 34 1 5.5398 6.1272 1.2527 35 1 3.4143 5.3139 2.2954 36 1 3.2742 5.4905 0.5294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528718588.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:22 Heat of formation + Delta-G solvation = -98.007933 kcal Electronic energy + Delta-G solvation = -16589.510697 eV Core-core repulsion = 13880.546974 eV Total energy + Delta-G solvation = -2708.963723 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24699 -37.67100 -35.34845 -32.56501 -32.34164 -30.59260 -28.19482 -25.95165 -24.39595 -22.82974 -22.72984 -21.48943 -19.73726 -17.01117 -16.53687 -16.46476 -15.58777 -15.40421 -14.71478 -14.37592 -14.26333 -13.75059 -13.39093 -13.15763 -12.79409 -12.54984 -12.02588 -11.80723 -11.46014 -11.28095 -11.22326 -10.97419 -10.80145 -10.67447 -10.36723 -10.19042 -9.92928 -9.54889 -9.30968 -9.02215 -8.43788 -7.25725 -6.44514 -4.18781 3.38077 3.38888 3.57913 3.64799 4.07975 4.46589 4.83251 4.96284 5.08888 5.26054 5.28818 5.33427 5.37303 5.45680 5.53284 5.65312 5.68269 5.76862 5.81758 5.86915 5.99856 6.02034 6.07998 6.40946 6.56692 6.68729 6.93058 7.14208 7.25000 7.57777 7.72400 7.99002 8.04419 8.41700 8.73527 9.54607 10.92937 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032877 B = 0.006114 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.442391 B = 4578.306109 C = 4988.916868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.382 6.382 4 C 0.073 3.927 5 C 0.096 3.904 6 H 0.066 0.934 7 C 0.036 3.964 8 N -0.534 5.534 9 C 0.175 3.825 10 C -0.632 4.632 11 H 0.052 0.948 12 C 0.023 3.977 13 N -0.907 5.907 14 Si 1.065 2.935 15 H -0.288 1.288 16 H -0.281 1.281 17 H -0.288 1.288 18 C 0.024 3.976 19 C 0.065 3.935 20 O -0.379 6.379 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.270 0.730 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.297 -6.123 0.357 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.301 6.301 4 C -0.004 4.004 5 C 0.038 3.962 6 H 0.084 0.916 7 C -0.093 4.093 8 N -0.258 5.258 9 C 0.049 3.951 10 C -0.670 4.670 11 H 0.070 0.930 12 C -0.182 4.182 13 N -0.542 5.542 14 Si 0.893 3.107 15 H -0.215 1.215 16 H -0.206 1.206 17 H -0.214 1.214 18 C -0.105 4.105 19 C -0.012 4.012 20 O -0.298 6.298 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.237 -6.196 0.667 14.631 hybrid contribution -0.653 -0.106 -0.073 0.665 sum -13.890 -6.303 0.594 15.264 Atomic orbital electron populations 1.21725 0.93962 1.01898 1.03116 1.22435 0.95474 0.84312 0.99907 1.87934 1.21034 1.25775 1.95400 1.22476 0.81251 0.95787 1.00891 1.22148 0.94463 0.91702 0.87885 0.91615 1.22441 0.92615 0.91900 1.02326 1.62667 1.17913 1.13275 1.31956 1.19859 0.81805 0.96718 0.96702 1.22527 0.94403 1.32842 1.17274 0.92989 1.25775 0.94941 0.97338 1.00173 1.70795 1.39218 1.27667 1.16569 0.83592 0.76332 0.75635 0.75108 1.21465 1.20621 1.21435 1.22589 0.94375 1.00387 0.93148 1.22676 0.94819 0.82506 1.01175 1.87947 1.79074 1.24173 1.38638 0.91363 0.91838 0.91966 0.93629 0.93519 0.91839 0.92494 0.90729 0.92762 0.95918 0.95898 0.91996 0.93222 0.90811 0.89278 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.06 0.63 6.66 37.16 0.25 0.88 16 3 O -0.38 -5.82 10.31 -39.96 -0.41 -6.23 16 4 C 0.07 1.11 5.61 37.16 0.21 1.32 16 5 C 0.10 1.70 3.09 -26.68 -0.08 1.62 16 6 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 7 C 0.04 0.73 4.56 -3.71 -0.02 0.71 16 8 N -0.53 -11.74 4.94 -235.75 -1.16 -12.91 16 9 C 0.18 4.49 4.47 -4.97 -0.02 4.47 16 10 C -0.63 -17.48 7.66 -34.44 -0.26 -17.74 16 11 H 0.05 1.45 5.79 -52.49 -0.30 1.15 16 12 C 0.02 0.65 5.46 -17.82 -0.10 0.56 16 13 N -0.91 -27.22 13.65 55.43 0.76 -26.46 16 14 Si 1.07 25.06 29.90 -169.99 -5.08 19.98 16 15 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 18 C 0.02 0.48 5.39 -3.71 -0.02 0.46 16 19 C 0.07 1.12 7.01 37.21 0.26 1.38 16 20 O -0.38 -7.15 10.44 -39.96 -0.42 -7.57 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.05 1.20 6.42 -51.93 -0.33 0.87 16 30 H 0.02 0.61 7.97 -51.93 -0.41 0.20 16 31 H 0.02 0.62 8.01 -51.93 -0.42 0.20 16 32 H 0.27 8.05 7.22 -40.82 -0.29 7.75 16 33 H 0.05 1.11 6.93 -51.93 -0.36 0.75 16 34 H 0.07 1.43 8.12 -51.93 -0.42 1.01 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 290.76 15.07 4.38 4.38 Total: -1.00 -30.92 290.76 -7.33 -38.25 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -5.99 Total: -2.07 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 0.60 Total: -7.38 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: -0.41 Total: -39.37 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.83 Total: -13.80 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.08 Total: 19.98 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.92 -7.33 -38.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528718588.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.753 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds