Wall clock time and date at job start Sun Mar 29 2020 21:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47061 * 2 1 4 4 C 1.42896 * 113.99688 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46969 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.54122 * 304.89202 * 5 4 3 7 7 C 1.53096 * 109.50989 * 184.78652 * 5 4 3 8 8 N 1.47016 * 109.25835 * 183.21854 * 7 5 4 9 9 C 1.46905 * 110.99651 * 182.39146 * 8 7 5 10 10 C 1.50696 * 109.46934 * 302.40706 * 9 8 7 11 11 H 1.07999 * 120.00202 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99746 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99573 * 0.27650 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47035 * 60.00183 * 14 12 10 16 16 H 1.48503 * 109.46845 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47237 * 299.99939 * 14 12 10 18 18 C 1.47013 * 110.75580 * 58.61442 * 8 7 5 19 19 C 1.53105 * 109.25566 * 301.38349 * 18 8 7 20 20 O 1.43017 * 109.25888 * 56.84818 * 19 18 8 21 21 H 1.09004 * 109.47354 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47103 * 299.99828 * 1 2 3 23 23 H 1.09002 * 109.47199 * 60.00213 * 1 2 3 24 24 H 1.09005 * 109.46953 * 239.99968 * 2 1 3 25 25 H 1.09000 * 109.47237 * 120.00338 * 2 1 3 26 26 H 1.09003 * 109.47250 * 60.00890 * 4 3 2 27 27 H 1.09001 * 109.47824 * 299.99807 * 4 3 2 28 28 H 1.09000 * 109.50976 * 63.27949 * 7 5 4 29 29 H 1.09003 * 109.50347 * 303.14816 * 7 5 4 30 30 H 1.09000 * 109.46374 * 182.41039 * 9 8 7 31 31 H 1.08999 * 109.46732 * 62.41112 * 9 8 7 32 32 H 0.97001 * 120.00651 * 359.71956 * 13 12 10 33 33 H 1.09001 * 109.50909 * 61.31452 * 18 8 7 34 34 H 1.08993 * 109.50923 * 181.40810 * 18 8 7 35 35 H 1.09004 * 109.50528 * 176.78199 * 19 18 8 36 36 H 1.08998 * 109.50851 * 296.87036 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 1 3.3520 3.4424 -0.8414 7 6 5.3466 3.0616 -0.1186 8 7 5.7259 4.4798 -0.0399 9 6 7.1758 4.6470 -0.2078 10 6 7.8989 3.8449 0.8432 11 1 7.3377 3.2689 1.5641 12 6 9.2771 3.8472 0.8852 13 7 9.9603 4.5538 0.0113 14 14 10.1735 2.8535 2.1884 15 1 9.8214 1.4180 2.0455 16 1 11.6391 3.0225 2.0186 17 1 9.7727 3.3297 3.5367 18 6 5.2705 5.0714 1.2265 19 6 3.7499 4.9280 1.3327 20 8 3.3975 3.5463 1.2229 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8340 0.9765 -0.8893 27 1 3.8333 0.9767 0.8908 28 1 5.6710 2.6505 -1.0746 29 1 5.8214 2.5122 0.6944 30 1 7.4344 5.7006 -0.1027 31 1 7.4695 4.2977 -1.1976 32 1 9.4948 5.0701 -0.6652 33 1 5.7440 4.5541 2.0610 34 1 5.5398 6.1272 1.2527 35 1 3.4143 5.3139 2.2954 36 1 3.2742 5.4905 0.5294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528718588.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:22 Heat of formation + Delta-G solvation = -120.348255 kcal Electronic energy + Delta-G solvation = -16590.479446 eV Core-core repulsion = 13880.546974 eV Total energy + Delta-G solvation = -2709.932472 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75535 -38.82340 -37.10610 -34.64017 -33.56041 -31.66494 -29.93520 -27.61765 -26.20221 -24.50140 -23.64915 -23.08076 -21.38732 -19.01692 -17.82025 -17.63659 -17.14688 -16.55734 -16.18034 -16.02788 -15.92842 -15.68882 -14.69215 -14.50721 -14.20574 -13.91338 -13.47285 -13.31002 -13.02046 -12.91196 -12.58118 -12.40189 -12.25346 -12.15485 -12.00196 -11.92420 -11.47384 -11.29749 -10.62767 -10.60839 -10.57785 -9.16565 -8.69289 -6.47132 1.47889 1.54385 1.74496 2.50056 2.52468 2.71130 3.08992 3.21376 3.92112 3.97483 4.05538 4.12617 4.18346 4.29285 4.31022 4.41992 4.44981 4.50811 4.54598 4.62071 4.81014 4.87649 4.90799 4.96114 4.99765 5.04107 5.06803 5.27759 5.70262 5.87582 6.12600 6.17420 6.27364 6.29869 6.45175 7.34746 8.65712 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032877 B = 0.006114 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.442391 B = 4578.306109 C = 4988.916868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.403 6.403 4 C 0.078 3.922 5 C 0.103 3.897 6 H 0.070 0.930 7 C 0.040 3.960 8 N -0.535 5.535 9 C 0.184 3.816 10 C -0.634 4.634 11 H 0.047 0.953 12 C -0.026 4.026 13 N -0.931 5.931 14 Si 1.112 2.888 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.273 1.273 18 C 0.024 3.976 19 C 0.071 3.929 20 O -0.391 6.391 21 H 0.093 0.907 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.031 0.969 30 H 0.005 0.995 31 H 0.005 0.995 32 H 0.258 0.742 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.616 -7.273 0.985 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.323 6.323 4 C 0.001 3.999 5 C 0.044 3.956 6 H 0.088 0.912 7 C -0.089 4.089 8 N -0.258 5.258 9 C 0.057 3.943 10 C -0.672 4.672 11 H 0.065 0.935 12 C -0.226 4.226 13 N -0.567 5.567 14 Si 0.933 3.067 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.199 1.199 18 C -0.105 4.105 19 C -0.005 4.005 20 O -0.311 6.311 21 H 0.112 0.888 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.096 0.904 35 H 0.137 0.863 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.595 -7.348 1.289 16.391 hybrid contribution -0.311 0.264 -0.299 0.506 sum -14.906 -7.084 0.990 16.534 Atomic orbital electron populations 1.21750 0.92562 1.03448 1.02648 1.22724 0.96649 0.82730 1.00920 1.87893 1.20575 1.28246 1.95587 1.22384 0.81852 0.93926 1.01757 1.22116 0.92161 0.93565 0.87712 0.91249 1.22445 0.94689 0.90275 1.01503 1.62622 1.15295 1.14729 1.33200 1.19600 0.84220 0.95171 0.95298 1.22741 0.94697 1.32517 1.17290 0.93452 1.27216 0.96334 0.97643 1.01369 1.70918 1.39351 1.29029 1.17444 0.82994 0.75186 0.75220 0.73280 1.19608 1.20598 1.19868 1.22668 0.96675 1.00050 0.91087 1.22768 0.92168 0.82174 1.03406 1.87948 1.78922 1.24989 1.39192 0.88820 0.92582 0.92142 0.92123 0.92967 0.89853 0.92769 0.90498 0.95040 0.97693 0.97650 0.93263 0.95741 0.90429 0.86331 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 10.28 71.98 0.74 -1.69 16 2 C 0.05 0.94 6.66 71.98 0.48 1.42 16 3 O -0.40 -11.50 10.31 -144.46 -1.49 -12.99 16 4 C 0.08 2.23 5.61 71.98 0.40 2.64 16 5 C 0.10 3.49 3.09 30.63 0.09 3.58 16 6 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 7 C 0.04 1.59 4.56 86.31 0.39 1.99 16 8 N -0.53 -23.59 4.94 -899.77 -4.44 -28.04 16 9 C 0.18 9.67 4.47 85.55 0.38 10.05 16 10 C -0.63 -35.49 7.66 25.60 0.20 -35.30 16 11 H 0.05 2.67 5.79 -2.91 -0.02 2.65 16 12 C -0.03 -1.49 5.46 84.66 0.46 -1.03 16 13 N -0.93 -56.67 13.65 21.45 0.29 -56.38 16 14 Si 1.11 49.99 29.90 68.60 2.05 52.04 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 C 0.02 0.95 5.39 86.32 0.46 1.42 16 19 C 0.07 2.31 7.01 72.02 0.50 2.81 16 20 O -0.39 -14.09 10.44 -144.46 -1.51 -15.60 16 21 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 26 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.03 1.40 6.42 -2.39 -0.02 1.39 16 30 H 0.01 0.28 7.97 -2.39 -0.02 0.26 16 31 H 0.01 0.30 8.01 -2.39 -0.02 0.28 16 32 H 0.26 15.85 7.22 -92.71 -0.67 15.18 16 33 H 0.02 1.09 6.93 -2.39 -0.02 1.07 16 34 H 0.08 2.98 8.12 -2.39 -0.02 2.96 16 35 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -65.93 290.76 0.16 -65.78 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.13 Total: 9.32 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.12 Total: -14.12 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -4.15 Total: -84.42 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -3.00 Total: -28.60 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.04 kcal Total: -65.93 0.16 -65.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528718588.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.573 kcal (2) G-P(sol) polarization free energy of solvation -65.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds