Wall clock time and date at job start Sun Mar 29 2020 21:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99844 * 2 1 4 4 C 1.52998 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47353 * 174.81079 * 4 3 2 6 6 H 1.09000 * 109.54152 * 302.74930 * 5 4 3 7 7 C 1.53096 * 109.50748 * 62.86111 * 5 4 3 8 8 O 1.43015 * 109.29124 * 176.75946 * 7 5 4 9 9 C 1.43019 * 113.73957 * 301.39874 * 8 7 5 10 10 C 1.53090 * 109.29255 * 58.60387 * 9 8 7 11 11 N 1.47016 * 109.50461 * 182.64374 * 5 4 3 12 12 C 1.46902 * 111.00054 * 57.67473 * 11 5 4 13 13 C 1.50703 * 109.46901 * 187.21943 * 12 11 5 14 14 H 1.08000 * 120.00158 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99766 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00377 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99966 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47133 * 60.00097 * 17 15 13 19 19 H 1.48503 * 109.47079 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46888 * 300.00025 * 17 15 13 21 21 H 1.09003 * 109.47236 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46877 * 299.99759 * 1 2 3 23 23 H 1.08998 * 109.47349 * 59.99668 * 1 2 3 24 24 H 1.09000 * 109.47848 * 60.00229 * 3 2 1 25 25 H 1.08997 * 109.47382 * 300.00069 * 3 2 1 26 26 H 1.09005 * 109.47299 * 54.80872 * 4 3 2 27 27 H 1.09010 * 109.47190 * 294.81060 * 4 3 2 28 28 H 1.08996 * 109.50793 * 296.71591 * 7 5 4 29 29 H 1.09006 * 109.50553 * 56.80851 * 7 5 4 30 30 H 1.08995 * 109.47031 * 298.66563 * 9 8 7 31 31 H 1.09005 * 109.53823 * 178.58221 * 9 8 7 32 32 H 1.09003 * 109.50979 * 183.23734 * 10 9 8 33 33 H 1.09006 * 109.51244 * 63.10601 * 10 9 8 34 34 H 1.09001 * 109.46921 * 307.21647 * 12 11 5 35 35 H 1.08998 * 109.47408 * 67.21767 * 12 11 5 36 36 H 0.97003 * 120.00745 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1572 2.5765 -0.1311 6 1 3.7911 3.0557 -1.0391 7 6 3.7732 3.4240 1.0847 8 8 4.4178 4.6975 0.9955 9 6 5.8443 4.6175 0.9307 10 6 6.2492 3.7822 -0.2867 11 7 5.6210 2.4561 -0.1955 12 6 6.0301 1.6015 -1.3181 13 6 7.5155 1.3573 -1.2482 14 1 8.0974 1.7929 -0.4494 15 6 8.1315 0.5767 -2.2033 16 7 7.4229 0.0458 -3.1757 17 14 9.9729 0.2745 -2.1170 18 1 10.3046 -0.3983 -0.8355 19 1 10.3864 -0.5895 -3.2518 20 1 10.6916 1.5717 -2.1957 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.6887 1.8464 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 3.8506 0.5657 -0.8408 27 1 3.8640 0.7259 0.9320 28 1 2.6924 3.5637 1.1043 29 1 4.0915 2.9180 1.9962 30 1 6.2234 4.1467 1.8376 31 1 6.2619 5.6203 0.8393 32 1 7.3333 3.6707 -0.3074 33 1 5.9166 4.2807 -1.1972 34 1 5.5023 0.6495 -1.2611 35 1 5.7871 2.0960 -2.2586 36 1 7.8562 -0.5037 -3.8475 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589752064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:51 Heat of formation + Delta-G solvation = -89.889518 kcal Electronic energy + Delta-G solvation = -16713.053473 eV Core-core repulsion = 14004.441791 eV Total energy + Delta-G solvation = -2708.611682 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.29335 -37.69993 -35.46006 -33.20800 -32.18493 -29.05164 -27.97983 -26.22070 -25.29416 -23.84301 -21.80430 -21.22681 -19.36893 -16.72093 -16.34143 -16.07584 -15.59210 -15.42266 -15.11877 -14.51912 -14.34626 -13.89539 -13.62149 -13.14759 -12.86335 -12.27275 -11.98059 -11.78174 -11.31617 -11.17079 -10.99822 -10.83325 -10.72574 -10.62585 -10.47515 -10.15052 -9.86917 -9.55444 -9.20993 -8.98092 -8.42617 -7.33727 -6.04056 -4.05832 3.32577 3.36926 3.39435 3.81834 4.19173 4.40503 4.78168 5.12626 5.23088 5.28921 5.32678 5.41066 5.43986 5.51328 5.57547 5.60421 5.63705 5.73360 5.76163 5.87876 6.04703 6.14765 6.38588 6.54331 6.59733 6.66074 7.20561 7.30472 7.30818 7.48448 7.74923 8.03624 8.12958 8.49463 9.00454 9.58146 11.06790 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.007851 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.173938 B = 3565.785835 C = 4702.585743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.063 3.937 4 C -0.113 4.113 5 C 0.053 3.947 6 H 0.039 0.961 7 C 0.069 3.931 8 O -0.394 6.394 9 C 0.061 3.939 10 C 0.029 3.971 11 N -0.529 5.529 12 C 0.188 3.812 13 C -0.511 4.511 14 H 0.062 0.938 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.083 0.917 22 H 0.038 0.962 23 H 0.039 0.961 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.029 0.971 34 H 0.041 0.959 35 H -0.010 1.010 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 4.851 6.788 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.014 4.014 4 C -0.150 4.150 5 C -0.056 4.056 6 H 0.057 0.943 7 C -0.008 4.008 8 O -0.312 6.312 9 C -0.015 4.015 10 C -0.099 4.099 11 N -0.255 5.255 12 C 0.064 3.936 13 C -0.550 4.550 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.102 0.898 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.008 0.992 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.672 4.519 7.049 12.793 hybrid contribution 0.646 0.086 -0.920 1.127 sum -9.026 4.605 6.129 11.842 Atomic orbital electron populations 1.22708 0.81607 1.02476 0.99686 1.87918 1.19193 1.28366 1.95339 1.22618 0.94827 0.84257 0.99680 1.21551 0.91261 0.97227 1.05005 1.22085 0.91331 0.94873 0.97361 0.94278 1.22745 0.96581 0.84122 0.97395 1.87886 1.19780 1.28731 1.94845 1.22753 0.80639 0.99933 0.98218 1.22620 1.01696 0.89643 0.95965 1.62371 1.03389 1.11653 1.48101 1.19845 0.96519 0.91895 0.85363 1.21095 0.92491 1.30872 1.10493 0.91957 1.24981 0.98454 0.95760 0.95308 1.69944 1.35849 1.33694 1.14123 0.86555 0.85119 0.78148 0.77549 1.20140 1.21337 1.20301 0.89848 0.94354 0.94262 0.93537 0.93503 0.89377 0.90428 0.89562 0.92534 0.92708 0.89307 0.88727 0.95233 0.94094 0.99209 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -5.98 10.70 -35.23 -0.38 -6.35 16 3 C 0.06 0.91 5.51 37.16 0.20 1.11 16 4 C -0.11 -1.97 4.88 -26.73 -0.13 -2.11 16 5 C 0.05 0.97 2.08 -67.60 -0.14 0.83 16 6 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 7 C 0.07 1.08 5.91 37.21 0.22 1.30 16 8 O -0.39 -6.70 10.83 -35.23 -0.38 -7.08 16 9 C 0.06 1.00 7.01 37.20 0.26 1.26 16 10 C 0.03 0.58 5.44 -3.71 -0.02 0.56 16 11 N -0.53 -11.46 4.55 -227.77 -1.04 -12.49 16 12 C 0.19 4.89 4.47 -4.97 -0.02 4.87 16 13 C -0.51 -14.25 8.47 -34.44 -0.29 -14.54 16 14 H 0.06 1.70 6.94 -52.49 -0.36 1.34 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 17 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.57 6.85 -51.93 -0.36 0.22 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 1.80 6.08 -51.93 -0.32 1.48 16 27 H 0.08 1.38 8.14 -51.92 -0.42 0.95 16 28 H 0.09 1.13 6.80 -51.93 -0.35 0.78 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.95 6.63 -51.93 -0.34 1.60 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.04 1.13 5.83 -51.93 -0.30 0.82 16 35 H -0.01 -0.28 8.14 -51.93 -0.42 -0.70 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 287.46 15.07 4.33 4.33 Total: -1.00 -30.73 287.46 -6.47 -37.21 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.82 Total: -2.49 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 1.10 Total: -3.75 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -0.30 Total: -38.41 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.76 Total: -13.43 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.73 -6.47 -37.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589752064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.684 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds