Wall clock time and date at job start Sun Mar 29 2020 21:31:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42894 * 113.99844 * 2 1
4 4 C 1.52998 * 109.47198 * 180.02562 * 3 2 1
5 5 C 1.53000 * 109.47353 * 174.81079 * 4 3 2
6 6 H 1.09000 * 109.54152 * 302.74930 * 5 4 3
7 7 C 1.53096 * 109.50748 * 62.86111 * 5 4 3
8 8 O 1.43015 * 109.29124 * 176.75946 * 7 5 4
9 9 C 1.43019 * 113.73957 * 301.39874 * 8 7 5
10 10 C 1.53090 * 109.29255 * 58.60387 * 9 8 7
11 11 N 1.47016 * 109.50461 * 182.64374 * 5 4 3
12 12 C 1.46902 * 111.00054 * 57.67473 * 11 5 4
13 13 C 1.50703 * 109.46901 * 187.21943 * 12 11 5
14 14 H 1.08000 * 120.00158 * 0.02562 * 13 12 11
15 15 C 1.37873 * 119.99766 * 179.97438 * 13 12 11
16 16 N 1.31512 * 120.00377 * 0.02562 * 15 13 12
17 17 Si 1.86806 * 119.99966 * 179.97438 * 15 13 12
18 18 H 1.48496 * 109.47133 * 60.00097 * 17 15 13
19 19 H 1.48503 * 109.47079 * 180.02562 * 17 15 13
20 20 H 1.48500 * 109.46888 * 300.00025 * 17 15 13
21 21 H 1.09003 * 109.47236 * 180.02562 * 1 2 3
22 22 H 1.08998 * 109.46877 * 299.99759 * 1 2 3
23 23 H 1.08998 * 109.47349 * 59.99668 * 1 2 3
24 24 H 1.09000 * 109.47848 * 60.00229 * 3 2 1
25 25 H 1.08997 * 109.47382 * 300.00069 * 3 2 1
26 26 H 1.09005 * 109.47299 * 54.80872 * 4 3 2
27 27 H 1.09010 * 109.47190 * 294.81060 * 4 3 2
28 28 H 1.08996 * 109.50793 * 296.71591 * 7 5 4
29 29 H 1.09006 * 109.50553 * 56.80851 * 7 5 4
30 30 H 1.08995 * 109.47031 * 298.66563 * 9 8 7
31 31 H 1.09005 * 109.53823 * 178.58221 * 9 8 7
32 32 H 1.09003 * 109.50979 * 183.23734 * 10 9 8
33 33 H 1.09006 * 109.51244 * 63.10601 * 10 9 8
34 34 H 1.09001 * 109.46921 * 307.21647 * 12 11 5
35 35 H 1.08998 * 109.47408 * 67.21767 * 12 11 5
36 36 H 0.97003 * 120.00745 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5354 1.1847 -0.0006
5 6 4.1572 2.5765 -0.1311
6 1 3.7911 3.0557 -1.0391
7 6 3.7732 3.4240 1.0847
8 8 4.4178 4.6975 0.9955
9 6 5.8443 4.6175 0.9307
10 6 6.2492 3.7822 -0.2867
11 7 5.6210 2.4561 -0.1955
12 6 6.0301 1.6015 -1.3181
13 6 7.5155 1.3573 -1.2482
14 1 8.0974 1.7929 -0.4494
15 6 8.1315 0.5767 -2.2033
16 7 7.4229 0.0458 -3.1757
17 14 9.9729 0.2745 -2.1170
18 1 10.3046 -0.3983 -0.8355
19 1 10.3864 -0.5895 -3.2518
20 1 10.6916 1.5717 -2.1957
21 1 -0.3634 -1.0277 0.0005
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5139 -0.8899
24 1 1.6887 1.8464 0.8900
25 1 1.6886 1.8464 -0.8899
26 1 3.8506 0.5657 -0.8408
27 1 3.8640 0.7259 0.9320
28 1 2.6924 3.5637 1.1043
29 1 4.0915 2.9180 1.9962
30 1 6.2234 4.1467 1.8376
31 1 6.2619 5.6203 0.8393
32 1 7.3333 3.6707 -0.3074
33 1 5.9166 4.2807 -1.1972
34 1 5.5023 0.6495 -1.2611
35 1 5.7871 2.0960 -2.2586
36 1 7.8562 -0.5037 -3.8475
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000589752064.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:31:51
Heat of formation + Delta-G solvation = -89.889518 kcal
Electronic energy + Delta-G solvation = -16713.053473 eV
Core-core repulsion = 14004.441791 eV
Total energy + Delta-G solvation = -2708.611682 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.146 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.29335 -37.69993 -35.46006 -33.20800 -32.18493 -29.05164 -27.97983 -26.22070
-25.29416 -23.84301 -21.80430 -21.22681 -19.36893 -16.72093 -16.34143 -16.07584
-15.59210 -15.42266 -15.11877 -14.51912 -14.34626 -13.89539 -13.62149 -13.14759
-12.86335 -12.27275 -11.98059 -11.78174 -11.31617 -11.17079 -10.99822 -10.83325
-10.72574 -10.62585 -10.47515 -10.15052 -9.86917 -9.55444 -9.20993 -8.98092
-8.42617 -7.33727 -6.04056 -4.05832 3.32577 3.36926 3.39435 3.81834
4.19173 4.40503 4.78168 5.12626 5.23088 5.28921 5.32678 5.41066
5.43986 5.51328 5.57547 5.60421 5.63705 5.73360 5.76163 5.87876
6.04703 6.14765 6.38588 6.54331 6.59733 6.66074 7.20561 7.30472
7.30818 7.48448 7.74923 8.03624 8.12958 8.49463 9.00454 9.58146
11.06790
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.021448 B = 0.007851 C = 0.005953
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1305.173938 B = 3565.785835 C = 4702.585743
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.389 6.389
3 C 0.063 3.937
4 C -0.113 4.113
5 C 0.053 3.947
6 H 0.039 0.961
7 C 0.069 3.931
8 O -0.394 6.394
9 C 0.061 3.939
10 C 0.029 3.971
11 N -0.529 5.529
12 C 0.188 3.812
13 C -0.511 4.511
14 H 0.062 0.938
15 C 0.057 3.943
16 N -0.897 5.897
17 Si 0.899 3.101
18 H -0.276 1.276
19 H -0.288 1.288
20 H -0.277 1.277
21 H 0.083 0.917
22 H 0.038 0.962
23 H 0.039 0.961
24 H 0.046 0.954
25 H 0.047 0.953
26 H 0.088 0.912
27 H 0.077 0.923
28 H 0.086 0.914
29 H 0.056 0.944
30 H 0.055 0.945
31 H 0.089 0.911
32 H 0.095 0.905
33 H 0.029 0.971
34 H 0.041 0.959
35 H -0.010 1.010
36 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.870 4.851 6.788 12.923
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.308 6.308
3 C -0.014 4.014
4 C -0.150 4.150
5 C -0.056 4.056
6 H 0.057 0.943
7 C -0.008 4.008
8 O -0.312 6.312
9 C -0.015 4.015
10 C -0.099 4.099
11 N -0.255 5.255
12 C 0.064 3.936
13 C -0.550 4.550
14 H 0.080 0.920
15 C -0.145 4.145
16 N -0.536 5.536
17 Si 0.726 3.274
18 H -0.201 1.201
19 H -0.213 1.213
20 H -0.203 1.203
21 H 0.102 0.898
22 H 0.056 0.944
23 H 0.057 0.943
24 H 0.065 0.935
25 H 0.065 0.935
26 H 0.106 0.894
27 H 0.096 0.904
28 H 0.104 0.896
29 H 0.075 0.925
30 H 0.073 0.927
31 H 0.107 0.893
32 H 0.113 0.887
33 H 0.048 0.952
34 H 0.059 0.941
35 H 0.008 0.992
36 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -9.672 4.519 7.049 12.793
hybrid contribution 0.646 0.086 -0.920 1.127
sum -9.026 4.605 6.129 11.842
Atomic orbital electron populations
1.22708 0.81607 1.02476 0.99686 1.87918 1.19193 1.28366 1.95339
1.22618 0.94827 0.84257 0.99680 1.21551 0.91261 0.97227 1.05005
1.22085 0.91331 0.94873 0.97361 0.94278 1.22745 0.96581 0.84122
0.97395 1.87886 1.19780 1.28731 1.94845 1.22753 0.80639 0.99933
0.98218 1.22620 1.01696 0.89643 0.95965 1.62371 1.03389 1.11653
1.48101 1.19845 0.96519 0.91895 0.85363 1.21095 0.92491 1.30872
1.10493 0.91957 1.24981 0.98454 0.95760 0.95308 1.69944 1.35849
1.33694 1.14123 0.86555 0.85119 0.78148 0.77549 1.20140 1.21337
1.20301 0.89848 0.94354 0.94262 0.93537 0.93503 0.89377 0.90428
0.89562 0.92534 0.92708 0.89307 0.88727 0.95233 0.94094 0.99209
0.92812
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.35 11.01 101.05 1.11 1.46 16
2 O -0.39 -5.98 10.70 -35.23 -0.38 -6.35 16
3 C 0.06 0.91 5.51 37.16 0.20 1.11 16
4 C -0.11 -1.97 4.88 -26.73 -0.13 -2.11 16
5 C 0.05 0.97 2.08 -67.60 -0.14 0.83 16
6 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16
7 C 0.07 1.08 5.91 37.21 0.22 1.30 16
8 O -0.39 -6.70 10.83 -35.23 -0.38 -7.08 16
9 C 0.06 1.00 7.01 37.20 0.26 1.26 16
10 C 0.03 0.58 5.44 -3.71 -0.02 0.56 16
11 N -0.53 -11.46 4.55 -227.77 -1.04 -12.49 16
12 C 0.19 4.89 4.47 -4.97 -0.02 4.87 16
13 C -0.51 -14.25 8.47 -34.44 -0.29 -14.54 16
14 H 0.06 1.70 6.94 -52.49 -0.36 1.34 16
15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16
16 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16
17 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16
18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16
19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16
20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16
21 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16
22 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16
23 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16
24 H 0.05 0.57 6.85 -51.93 -0.36 0.22 16
25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
26 H 0.09 1.80 6.08 -51.93 -0.32 1.48 16
27 H 0.08 1.38 8.14 -51.92 -0.42 0.95 16
28 H 0.09 1.13 6.80 -51.93 -0.35 0.78 16
29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16
32 H 0.09 1.95 6.63 -51.93 -0.34 1.60 16
33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
34 H 0.04 1.13 5.83 -51.93 -0.30 0.82 16
35 H -0.01 -0.28 8.14 -51.93 -0.42 -0.70 16
36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
LS Contribution 287.46 15.07 4.33 4.33
Total: -1.00 -30.73 287.46 -6.47 -37.21
By element:
Atomic # 1 Polarization: 3.33 SS G_CDS: -5.82 Total: -2.49 kcal
Atomic # 6 Polarization: -4.84 SS G_CDS: 1.10 Total: -3.75 kcal
Atomic # 7 Polarization: -38.11 SS G_CDS: -0.30 Total: -38.41 kcal
Atomic # 8 Polarization: -12.68 SS G_CDS: -0.76 Total: -13.43 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal
Total LS contribution 4.33 Total: 4.33 kcal
Total: -30.73 -6.47 -37.21 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000589752064.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.684 kcal
(2) G-P(sol) polarization free energy of solvation -30.733 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.417 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.890 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds