Wall clock time and date at job start Sun Mar 29 2020 21:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99844 * 2 1 4 4 C 1.52998 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47353 * 174.81079 * 4 3 2 6 6 H 1.09000 * 109.54152 * 302.74930 * 5 4 3 7 7 C 1.53096 * 109.50748 * 62.86111 * 5 4 3 8 8 O 1.43015 * 109.29124 * 176.75946 * 7 5 4 9 9 C 1.43019 * 113.73957 * 301.39874 * 8 7 5 10 10 C 1.53090 * 109.29255 * 58.60387 * 9 8 7 11 11 N 1.47016 * 109.50461 * 182.64374 * 5 4 3 12 12 C 1.46902 * 111.00054 * 57.67473 * 11 5 4 13 13 C 1.50703 * 109.46901 * 187.21943 * 12 11 5 14 14 H 1.08000 * 120.00158 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99766 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00377 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99966 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47133 * 60.00097 * 17 15 13 19 19 H 1.48503 * 109.47079 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46888 * 300.00025 * 17 15 13 21 21 H 1.09003 * 109.47236 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46877 * 299.99759 * 1 2 3 23 23 H 1.08998 * 109.47349 * 59.99668 * 1 2 3 24 24 H 1.09000 * 109.47848 * 60.00229 * 3 2 1 25 25 H 1.08997 * 109.47382 * 300.00069 * 3 2 1 26 26 H 1.09005 * 109.47299 * 54.80872 * 4 3 2 27 27 H 1.09010 * 109.47190 * 294.81060 * 4 3 2 28 28 H 1.08996 * 109.50793 * 296.71591 * 7 5 4 29 29 H 1.09006 * 109.50553 * 56.80851 * 7 5 4 30 30 H 1.08995 * 109.47031 * 298.66563 * 9 8 7 31 31 H 1.09005 * 109.53823 * 178.58221 * 9 8 7 32 32 H 1.09003 * 109.50979 * 183.23734 * 10 9 8 33 33 H 1.09006 * 109.51244 * 63.10601 * 10 9 8 34 34 H 1.09001 * 109.46921 * 307.21647 * 12 11 5 35 35 H 1.08998 * 109.47408 * 67.21767 * 12 11 5 36 36 H 0.97003 * 120.00745 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1572 2.5765 -0.1311 6 1 3.7911 3.0557 -1.0391 7 6 3.7732 3.4240 1.0847 8 8 4.4178 4.6975 0.9955 9 6 5.8443 4.6175 0.9307 10 6 6.2492 3.7822 -0.2867 11 7 5.6210 2.4561 -0.1955 12 6 6.0301 1.6015 -1.3181 13 6 7.5155 1.3573 -1.2482 14 1 8.0974 1.7929 -0.4494 15 6 8.1315 0.5767 -2.2033 16 7 7.4229 0.0458 -3.1757 17 14 9.9729 0.2745 -2.1170 18 1 10.3046 -0.3983 -0.8355 19 1 10.3864 -0.5895 -3.2518 20 1 10.6916 1.5717 -2.1957 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.6887 1.8464 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 3.8506 0.5657 -0.8408 27 1 3.8640 0.7259 0.9320 28 1 2.6924 3.5637 1.1043 29 1 4.0915 2.9180 1.9962 30 1 6.2234 4.1467 1.8376 31 1 6.2619 5.6203 0.8393 32 1 7.3333 3.6707 -0.3074 33 1 5.9166 4.2807 -1.1972 34 1 5.5023 0.6495 -1.2611 35 1 5.7871 2.0960 -2.2586 36 1 7.8562 -0.5037 -3.8475 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589752064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:51 Heat of formation + Delta-G solvation = -113.004261 kcal Electronic energy + Delta-G solvation = -16714.055803 eV Core-core repulsion = 14004.441791 eV Total energy + Delta-G solvation = -2709.614012 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.75528 -38.82276 -37.03983 -34.96137 -33.98950 -30.50304 -29.65286 -27.35720 -26.96743 -25.15858 -23.70772 -22.63802 -20.91256 -18.63343 -17.75612 -17.43250 -16.95339 -16.68532 -16.41358 -16.31719 -15.74398 -15.39912 -15.04672 -14.73077 -14.42113 -14.05018 -13.50825 -13.09358 -12.93342 -12.73910 -12.58018 -12.47830 -12.23850 -12.09160 -11.99903 -11.91211 -11.33792 -11.26145 -10.65886 -10.61428 -10.41795 -9.14571 -8.22221 -6.32827 1.40249 1.43789 1.51597 2.38415 2.69768 2.89493 3.10292 3.25907 3.76392 4.05897 4.10628 4.14413 4.22088 4.26106 4.38056 4.43814 4.51651 4.56320 4.58064 4.73033 4.80386 4.85366 4.93134 4.96987 5.06764 5.16828 5.23177 5.27085 5.60859 6.00351 6.14597 6.22785 6.24974 6.54420 6.82184 7.36704 8.89071 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.007851 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.173938 B = 3565.785835 C = 4702.585743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.422 6.422 3 C 0.071 3.929 4 C -0.106 4.106 5 C 0.052 3.948 6 H 0.026 0.974 7 C 0.074 3.926 8 O -0.398 6.398 9 C 0.071 3.929 10 C 0.027 3.973 11 N -0.536 5.536 12 C 0.205 3.795 13 C -0.527 4.527 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.972 3.028 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.266 1.266 21 H 0.095 0.905 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.015 0.985 34 H 0.017 0.983 35 H -0.046 1.046 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.132 5.849 8.496 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.342 6.342 3 C -0.006 4.006 4 C -0.144 4.144 5 C -0.058 4.058 6 H 0.044 0.956 7 C -0.002 4.002 8 O -0.316 6.316 9 C -0.006 4.006 10 C -0.101 4.101 11 N -0.261 5.261 12 C 0.079 3.921 13 C -0.565 4.565 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.796 3.204 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.190 1.190 21 H 0.114 0.886 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.139 0.861 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.100 0.900 33 H 0.034 0.966 34 H 0.035 0.965 35 H -0.029 1.029 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.953 5.537 8.778 14.379 hybrid contribution 0.649 -0.239 -1.466 1.621 sum -9.303 5.298 7.312 12.965 Atomic orbital electron populations 1.22957 0.79188 1.03865 1.01112 1.87867 1.21881 1.28824 1.95629 1.22520 0.92187 0.84516 1.01373 1.21417 0.94102 0.96004 1.02847 1.22221 0.89087 0.95897 0.98550 0.95563 1.22848 0.98476 0.83175 0.95742 1.87892 1.19944 1.29177 1.94631 1.22780 0.80588 1.00888 0.96354 1.22692 1.00868 0.89045 0.97537 1.62309 1.05904 1.12422 1.45502 1.19460 0.95806 0.91441 0.85375 1.21437 0.93466 1.30936 1.10674 0.91601 1.25947 1.03698 0.95314 0.94745 1.70090 1.38051 1.34406 1.14958 0.85404 0.78783 0.78454 0.77787 1.19237 1.20952 1.19036 0.88647 0.92273 0.93395 0.90366 0.93044 0.93530 0.90844 0.86124 0.91668 0.91793 0.86202 0.90030 0.96628 0.96459 1.02876 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.42 -12.60 10.70 -148.98 -1.59 -14.20 16 3 C 0.07 1.95 5.51 71.98 0.40 2.35 16 4 C -0.11 -3.78 4.88 30.59 0.15 -3.63 16 5 C 0.05 1.89 2.08 44.93 0.09 1.99 16 6 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 7 C 0.07 2.14 5.91 72.01 0.43 2.57 16 8 O -0.40 -12.40 10.83 -148.98 -1.61 -14.01 16 9 C 0.07 2.13 7.01 72.01 0.50 2.64 16 10 C 0.03 1.06 5.44 86.31 0.47 1.53 16 11 N -0.54 -23.70 4.55 -874.52 -3.98 -27.68 16 12 C 0.21 11.22 4.47 85.56 0.38 11.60 16 13 C -0.53 -30.18 8.47 25.60 0.22 -29.97 16 14 H 0.07 3.64 6.94 -2.91 -0.02 3.62 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 17 Si 0.97 44.54 29.54 68.60 2.03 46.56 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.08 1.66 6.85 -2.39 -0.02 1.65 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 2.03 6.08 -2.38 -0.01 2.02 16 27 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 28 H 0.12 2.67 6.80 -2.39 -0.02 2.66 16 29 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.12 2.90 8.14 -2.38 -0.02 2.88 16 32 H 0.08 3.39 6.63 -2.39 -0.02 3.37 16 33 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.02 1.03 5.83 -2.39 -0.01 1.01 16 35 H -0.05 -2.81 8.14 -2.39 -0.02 -2.83 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -68.18 287.46 0.51 -67.67 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 1.04 Total: 7.32 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 4.35 Total: -8.66 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -3.69 Total: -84.69 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -3.21 Total: -28.21 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -68.18 0.51 -67.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589752064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.334 kcal (2) G-P(sol) polarization free energy of solvation -68.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds