Wall clock time and date at job start Sun Mar 29 2020 21:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48494 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47075 * 300.00324 * 3 2 1 6 6 H 1.48508 * 109.46993 * 59.99777 * 3 2 1 7 7 C 1.37871 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99821 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.34754 * 120.04194 * 269.97670 * 10 9 7 12 12 N 1.30641 * 121.48964 * 179.73596 * 11 10 9 13 13 C 1.33514 * 121.50713 * 0.57861 * 12 11 10 14 14 C 1.50706 * 120.04576 * 179.70598 * 13 12 11 15 15 F 1.39900 * 109.46715 * 299.72448 * 14 13 12 16 16 F 1.39897 * 109.47068 * 59.72359 * 14 13 12 17 17 C 1.36195 * 119.91207 * 359.43155 * 13 12 11 18 18 C 1.35026 * 120.04258 * 89.99964 * 10 9 7 19 19 O 1.21975 * 120.71096 * 359.95168 * 18 10 9 20 20 H 0.96993 * 120.00380 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47491 * 60.00129 * 9 7 2 22 22 H 1.09003 * 109.47323 * 299.99798 * 9 7 2 23 23 H 1.07996 * 119.25052 * 0.04804 * 11 10 9 24 24 H 1.09000 * 109.47161 * 179.72604 * 14 13 12 25 25 H 1.07996 * 120.70947 * 180.25560 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 2.6421 -4.1262 -1.1642 12 7 3.4947 -5.1155 -1.1961 13 6 3.9616 -5.6707 -0.0752 14 6 4.9394 -6.8150 -0.1505 15 9 4.3521 -7.8860 -0.8325 16 9 6.0890 -6.4020 -0.8323 17 6 3.5574 -5.1978 1.1364 18 6 2.6415 -4.1259 1.1712 19 8 2.2541 -3.6719 2.2350 20 1 -0.4850 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.2847 -3.7072 -2.0932 24 1 5.2084 -7.1300 0.8578 25 1 3.9300 -5.6345 2.0511 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589960706.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:48 Heat of formation + Delta-G solvation = -119.710056 kcal Electronic energy + Delta-G solvation = -15557.116643 eV Core-core repulsion = 12399.032230 eV Total energy + Delta-G solvation = -3158.084413 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.97047 -47.99438 -42.73857 -38.73992 -36.90374 -34.77786 -32.55443 -30.31602 -28.03316 -25.86134 -25.05163 -23.16092 -19.78488 -19.02952 -18.89343 -18.27386 -18.00690 -17.70661 -16.82924 -16.58943 -16.28461 -15.46593 -14.90724 -14.73955 -14.51030 -14.35951 -14.01193 -13.89566 -13.70215 -13.21236 -12.74680 -12.53976 -12.39593 -12.18552 -11.29383 -11.17385 -11.08439 -10.74743 -9.61873 -8.38496 -6.53757 -0.53357 0.68514 1.36570 1.39043 1.49356 1.65020 2.30509 2.40622 2.48903 2.94381 2.97685 3.18916 3.76188 3.78893 3.98341 4.08395 4.33329 4.52431 4.72183 4.93976 5.28128 5.54001 5.65989 5.75531 6.50704 6.65189 6.81754 7.17821 8.70757 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.044157 B = 0.006570 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.941692 B = 4260.632637 C = 4408.366609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.281 1.281 7 C -0.557 4.557 8 H 0.054 0.946 9 C 0.231 3.769 10 N -0.499 5.499 11 C 0.395 3.605 12 N -0.551 5.551 13 C 0.100 3.900 14 C 0.334 3.666 15 F -0.199 7.199 16 F -0.201 7.201 17 C -0.258 4.258 18 C 0.495 3.505 19 O -0.581 6.581 20 H 0.273 0.727 21 H 0.068 0.932 22 H 0.025 0.975 23 H 0.237 0.763 24 H 0.185 0.815 25 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.874 -10.990 -2.649 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.190 1.190 6 H -0.207 1.207 7 C -0.595 4.595 8 H 0.073 0.927 9 C 0.111 3.889 10 N -0.210 5.210 11 C 0.112 3.888 12 N -0.275 5.275 13 C -0.025 4.025 14 C 0.280 3.720 15 F -0.181 7.181 16 F -0.182 7.182 17 C -0.284 4.284 18 C 0.296 3.704 19 O -0.462 6.462 20 H 0.082 0.918 21 H 0.086 0.914 22 H 0.044 0.956 23 H 0.253 0.747 24 H 0.202 0.798 25 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.773 -10.956 -2.637 13.690 hybrid contribution -0.250 1.355 0.753 1.570 sum 7.523 -9.602 -1.885 12.343 Atomic orbital electron populations 1.69997 1.07329 1.28837 1.49179 1.25713 0.95782 1.02779 0.93549 0.85324 0.78558 0.78446 0.78251 1.19527 1.18966 1.20654 1.21418 0.93199 0.90981 1.53936 0.92743 1.19653 0.87649 0.82128 0.99511 1.47226 1.36506 1.29149 1.08128 1.25614 0.85800 0.86157 0.91214 1.68268 1.16044 1.13462 1.29715 1.22062 0.95116 0.95803 0.89474 1.20882 0.77176 0.79467 0.94432 1.93011 1.84785 1.56875 1.83388 1.93011 1.50923 1.90882 1.83416 1.22804 1.03983 1.00580 1.01014 1.17768 0.83882 0.85253 0.83546 1.90907 1.61119 1.64351 1.29866 0.91758 0.91422 0.95641 0.74659 0.79845 0.79507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.62 13.29 21.45 0.28 -50.34 15 2 C 0.02 1.24 5.46 84.65 0.46 1.70 15 3 Si 0.97 42.02 29.54 68.60 2.03 44.05 15 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 5 H -0.26 -10.79 7.11 99.48 0.71 -10.09 15 6 H -0.28 -12.15 7.11 99.48 0.71 -11.45 15 7 C -0.56 -29.51 9.38 25.60 0.24 -29.27 15 8 H 0.05 2.92 7.81 -2.91 -0.02 2.90 15 9 C 0.23 11.11 5.13 85.63 0.44 11.55 15 10 N -0.50 -20.32 2.55 -659.11 -1.68 -22.00 15 11 C 0.39 12.72 11.48 180.31 2.07 14.79 15 12 N -0.55 -17.25 10.33 -187.75 -1.94 -19.19 15 13 C 0.10 2.83 6.21 41.83 0.26 3.09 15 14 C 0.33 6.97 5.63 71.24 0.40 7.37 15 15 F -0.20 -4.76 17.32 44.97 0.78 -3.98 15 16 F -0.20 -4.98 17.32 44.97 0.78 -4.20 15 17 C -0.26 -7.99 9.68 22.48 0.22 -7.77 15 18 C 0.50 20.99 7.45 84.89 0.63 21.62 15 19 O -0.58 -29.92 16.78 -5.23 -0.09 -30.01 15 20 H 0.27 14.14 8.31 -92.71 -0.77 13.37 15 21 H 0.07 3.05 8.02 -2.39 -0.02 3.03 15 22 H 0.03 1.42 7.45 -2.39 -0.02 1.40 15 23 H 0.24 5.83 8.03 -2.91 -0.02 5.81 15 24 H 0.18 1.88 7.87 -2.39 -0.02 1.86 15 25 H 0.19 4.35 7.95 -2.91 -0.02 4.32 15 Total: -1.00 -68.44 244.30 6.11 -62.33 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: 1.23 Total: 0.25 kcal Atomic # 6 Polarization: 18.36 SS G_CDS: 4.72 Total: 23.08 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -3.34 Total: -91.53 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.09 Total: -30.01 kcal Atomic # 9 Polarization: -9.73 SS G_CDS: 1.56 Total: -8.18 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -68.44 6.11 -62.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589960706.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.377 kcal (2) G-P(sol) polarization free energy of solvation -68.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds