Wall clock time and date at job start Sun Mar 29 2020 21:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47093 * 2 1 4 4 C 1.52999 * 109.47235 * 240.00332 * 2 1 3 5 5 C 1.50701 * 109.47438 * 59.99684 * 4 2 1 6 6 H 1.08003 * 119.99620 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00111 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99775 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99704 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47222 * 90.00224 * 9 7 5 11 11 H 1.48501 * 109.47329 * 210.00053 * 9 7 5 12 12 H 1.48498 * 109.47394 * 330.00153 * 9 7 5 13 13 C 1.52998 * 109.47505 * 119.99902 * 2 1 3 14 14 N 1.46901 * 109.47279 * 289.08617 * 13 2 1 15 15 C 1.47901 * 110.99957 * 173.02897 * 14 13 2 16 16 C 1.54002 * 107.22014 * 214.25325 * 15 14 13 17 17 C 1.54595 * 105.14116 * 1.12332 * 16 15 14 18 18 H 1.08999 * 110.72487 * 263.60224 * 17 16 15 19 19 F 1.39899 * 110.72175 * 140.31814 * 17 16 15 20 20 C 1.48807 * 111.18690 * 55.68616 * 14 13 2 21 21 H 1.08997 * 109.46965 * 330.55731 * 1 2 3 22 22 H 1.08997 * 109.47116 * 90.56005 * 1 2 3 23 23 H 1.09007 * 109.47061 * 210.56042 * 1 2 3 24 24 H 1.09000 * 109.47133 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46980 * 300.00134 * 3 2 1 26 26 H 1.09002 * 109.47038 * 60.00189 * 3 2 1 27 27 H 1.09000 * 109.47524 * 179.97438 * 4 2 1 28 28 H 1.09004 * 109.46731 * 300.00186 * 4 2 1 29 29 H 0.97000 * 119.99550 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47164 * 169.07823 * 13 2 1 31 31 H 1.09004 * 109.46740 * 49.08476 * 13 2 1 32 32 H 1.08994 * 109.92030 * 94.80102 * 15 14 13 33 33 H 1.09001 * 109.91323 * 333.69854 * 15 14 13 34 34 H 1.09001 * 110.30509 * 120.04289 * 16 15 14 35 35 H 1.09007 * 110.30339 * 242.20819 * 16 15 14 36 36 H 1.09005 * 110.51664 * 41.07179 * 20 14 13 37 37 H 1.09004 * 110.84168 * 278.09347 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6265 -1.5513 -3.8526 9 14 1.2470 0.3981 -5.2571 10 1 2.2249 1.4397 -5.6619 11 1 1.0816 -0.5813 -6.3611 12 1 -0.0611 1.0356 -4.9610 13 6 2.0400 -0.7212 1.2492 14 7 1.7763 0.1060 2.4342 15 6 2.1036 -0.6276 3.6761 16 6 1.0933 -0.1808 4.7491 17 6 0.1614 0.8236 4.0331 18 1 0.4863 1.8481 4.2145 19 9 -1.1653 0.6443 4.4393 20 6 0.3325 0.4505 2.5391 21 1 -0.3633 0.8949 0.5051 22 1 -0.3633 -0.0100 -1.0276 23 1 -0.3633 -0.8850 0.5225 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.1300 -0.7208 -1.2495 28 1 1.6766 -1.7488 -1.2493 29 1 2.8602 -1.8831 -4.7337 30 1 3.1125 -0.8929 1.1572 31 1 1.5266 -1.6772 1.3519 32 1 3.1167 -0.3836 3.9955 33 1 2.0158 -1.7009 3.5074 34 1 0.5219 -1.0360 5.1101 35 1 1.6103 0.3061 5.5761 36 1 -0.2853 -0.4107 2.2843 37 1 0.0890 1.2995 1.9003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590658751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:08 Heat of formation + Delta-G solvation = -52.426936 kcal Electronic energy + Delta-G solvation = -16865.650081 eV Core-core repulsion = 14171.035688 eV Total energy + Delta-G solvation = -2694.614393 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.61323 -39.19452 -35.93927 -32.51208 -30.58416 -29.06594 -26.79797 -26.37106 -25.48165 -22.75601 -21.03859 -20.86396 -18.07117 -16.87997 -16.18803 -16.06390 -15.03440 -14.55420 -14.45474 -13.91789 -13.71068 -13.47391 -13.14956 -12.79163 -12.52617 -12.18708 -11.91313 -11.41757 -11.31116 -10.95703 -10.89552 -10.80681 -10.71883 -10.53312 -10.38974 -10.12192 -9.91161 -9.67577 -9.02266 -8.84527 -8.32474 -8.21345 -5.97176 -3.97265 3.33188 3.39834 3.42482 4.01843 4.38787 4.46906 4.49308 4.77693 4.83438 5.18950 5.38619 5.48738 5.59336 5.60896 5.64167 5.70488 5.83059 5.90485 6.05664 6.12355 6.21316 6.32312 6.49270 6.58869 6.68881 6.85681 6.99155 7.16837 7.23006 7.29907 7.38789 7.69474 7.84121 8.02597 8.46814 9.07956 9.65446 11.14484 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.050000 B = 0.005996 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.869915 B = 4668.684398 C = 4940.668328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.059 4.059 3 C -0.116 4.116 4 C 0.035 3.965 5 C -0.508 4.508 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.058 3.942 14 N -0.507 5.507 15 C 0.034 3.966 16 C -0.154 4.154 17 C 0.077 3.923 18 H 0.097 0.903 19 F -0.212 7.212 20 C 0.006 3.994 21 H 0.046 0.954 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.259 0.741 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 3.192 14.721 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.060 4.060 3 C -0.173 4.173 4 C -0.002 4.002 5 C -0.546 4.546 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.070 4.070 14 N -0.231 5.231 15 C -0.094 4.094 16 C -0.193 4.193 17 C 0.040 3.960 18 H 0.115 0.885 19 F -0.193 7.193 20 C -0.122 4.122 21 H 0.064 0.936 22 H 0.091 0.909 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.324 3.520 14.538 15.138 hybrid contribution -0.745 -0.509 -0.846 1.236 sum -3.069 3.012 13.692 14.351 Atomic orbital electron populations 1.22402 0.96101 0.99033 1.02898 1.20645 0.94653 0.96319 0.94362 1.21655 1.00139 0.95518 1.00007 1.19128 0.96124 0.95009 0.89971 1.21222 1.30873 1.11903 0.90585 0.92249 1.25014 0.95402 0.95090 0.99066 1.69966 1.37264 1.23151 1.23321 0.86657 0.79244 0.79420 0.83060 1.20759 1.21391 1.19932 1.22554 1.01143 0.93564 0.89698 1.64877 1.16074 1.40308 1.01874 1.22849 0.99383 0.97046 0.90170 1.22988 0.97848 0.99548 0.98900 1.22613 0.76935 1.00821 0.95625 0.88490 1.92790 1.37765 1.96951 1.91785 1.24385 0.90930 1.02690 0.94191 0.93559 0.90884 0.94558 0.93899 0.92641 0.93928 0.96604 0.96891 0.93142 0.90707 0.95124 0.90102 0.93494 0.90424 0.90165 0.91950 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 7.17 37.16 0.27 -2.48 16 2 C -0.06 -1.17 0.53 -154.51 -0.08 -1.25 16 3 C -0.12 -2.21 7.70 37.16 0.29 -1.92 16 4 C 0.04 0.88 4.01 -27.88 -0.11 0.77 16 5 C -0.51 -13.78 7.23 -34.44 -0.25 -14.03 16 6 H 0.06 1.57 6.05 -52.48 -0.32 1.25 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 13 C 0.06 1.00 4.13 -3.82 -0.02 0.98 16 14 N -0.51 -7.42 4.41 -230.21 -1.02 -8.43 16 15 C 0.03 0.41 6.69 -2.75 -0.02 0.39 16 16 C -0.15 -1.62 6.74 -25.37 -0.17 -1.80 16 17 C 0.08 0.92 4.87 -24.87 -0.12 0.80 16 18 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 19 F -0.21 -2.86 17.19 2.25 0.04 -2.82 16 20 C 0.01 0.08 4.05 -1.75 -0.01 0.07 16 21 H 0.05 0.76 5.09 -51.93 -0.26 0.49 16 22 H 0.07 1.54 6.29 -51.93 -0.33 1.21 16 23 H 0.04 0.63 6.32 -51.93 -0.33 0.31 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 26 H 0.04 0.72 5.98 -51.93 -0.31 0.41 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 31 H 0.03 0.53 7.60 -51.93 -0.39 0.14 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.57 7.62 -51.93 -0.40 0.18 16 34 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.93 6.22 -51.93 -0.32 0.60 16 37 H 0.11 1.51 4.63 -51.93 -0.24 1.27 16 LS Contribution 280.11 15.07 4.22 4.22 Total: -1.00 -28.88 280.11 -7.12 -36.00 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.76 Total: -2.43 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -0.32 Total: -17.02 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.28 Total: -34.44 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.88 -7.12 -36.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590658751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.427 kcal (2) G-P(sol) polarization free energy of solvation -28.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds