Wall clock time and date at job start Sun Mar 29 2020 21:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47093 * 2 1 4 4 C 1.52999 * 109.47235 * 240.00332 * 2 1 3 5 5 C 1.50701 * 109.47438 * 59.99684 * 4 2 1 6 6 H 1.08003 * 119.99620 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00111 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99775 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99704 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47222 * 90.00224 * 9 7 5 11 11 H 1.48501 * 109.47329 * 210.00053 * 9 7 5 12 12 H 1.48498 * 109.47394 * 330.00153 * 9 7 5 13 13 C 1.52998 * 109.47505 * 119.99902 * 2 1 3 14 14 N 1.46901 * 109.47279 * 289.08617 * 13 2 1 15 15 C 1.47901 * 110.99957 * 173.02897 * 14 13 2 16 16 C 1.54002 * 107.22014 * 214.25325 * 15 14 13 17 17 C 1.54595 * 105.14116 * 1.12332 * 16 15 14 18 18 H 1.08999 * 110.72487 * 263.60224 * 17 16 15 19 19 F 1.39899 * 110.72175 * 140.31814 * 17 16 15 20 20 C 1.48807 * 111.18690 * 55.68616 * 14 13 2 21 21 H 1.08997 * 109.46965 * 330.55731 * 1 2 3 22 22 H 1.08997 * 109.47116 * 90.56005 * 1 2 3 23 23 H 1.09007 * 109.47061 * 210.56042 * 1 2 3 24 24 H 1.09000 * 109.47133 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46980 * 300.00134 * 3 2 1 26 26 H 1.09002 * 109.47038 * 60.00189 * 3 2 1 27 27 H 1.09000 * 109.47524 * 179.97438 * 4 2 1 28 28 H 1.09004 * 109.46731 * 300.00186 * 4 2 1 29 29 H 0.97000 * 119.99550 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47164 * 169.07823 * 13 2 1 31 31 H 1.09004 * 109.46740 * 49.08476 * 13 2 1 32 32 H 1.08994 * 109.92030 * 94.80102 * 15 14 13 33 33 H 1.09001 * 109.91323 * 333.69854 * 15 14 13 34 34 H 1.09001 * 110.30509 * 120.04289 * 16 15 14 35 35 H 1.09007 * 110.30339 * 242.20819 * 16 15 14 36 36 H 1.09005 * 110.51664 * 41.07179 * 20 14 13 37 37 H 1.09004 * 110.84168 * 278.09347 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6265 -1.5513 -3.8526 9 14 1.2470 0.3981 -5.2571 10 1 2.2249 1.4397 -5.6619 11 1 1.0816 -0.5813 -6.3611 12 1 -0.0611 1.0356 -4.9610 13 6 2.0400 -0.7212 1.2492 14 7 1.7763 0.1060 2.4342 15 6 2.1036 -0.6276 3.6761 16 6 1.0933 -0.1808 4.7491 17 6 0.1614 0.8236 4.0331 18 1 0.4863 1.8481 4.2145 19 9 -1.1653 0.6443 4.4393 20 6 0.3325 0.4505 2.5391 21 1 -0.3633 0.8949 0.5051 22 1 -0.3633 -0.0100 -1.0276 23 1 -0.3633 -0.8850 0.5225 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.1300 -0.7208 -1.2495 28 1 1.6766 -1.7488 -1.2493 29 1 2.8602 -1.8831 -4.7337 30 1 3.1125 -0.8929 1.1572 31 1 1.5266 -1.6772 1.3519 32 1 3.1167 -0.3836 3.9955 33 1 2.0158 -1.7009 3.5074 34 1 0.5219 -1.0360 5.1101 35 1 1.6103 0.3061 5.5761 36 1 -0.2853 -0.4107 2.2843 37 1 0.0890 1.2995 1.9003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590658751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:08 Heat of formation + Delta-G solvation = -69.662531 kcal Electronic energy + Delta-G solvation = -16866.397472 eV Core-core repulsion = 14171.035688 eV Total energy + Delta-G solvation = -2695.361784 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.59733 -40.47047 -37.40994 -34.53122 -31.85096 -30.26342 -28.65812 -27.87359 -26.88235 -24.63801 -22.12535 -21.88289 -19.69505 -18.30980 -17.84865 -17.22919 -16.47494 -16.19394 -15.52968 -15.23527 -14.93761 -14.87481 -14.53208 -14.20925 -14.16974 -13.77209 -13.33143 -12.89252 -12.77329 -12.61365 -12.45208 -12.27009 -12.16210 -12.08347 -11.77926 -11.59534 -11.38473 -11.32745 -10.84125 -10.67375 -10.50601 -9.39659 -8.14492 -6.21235 1.41264 1.41539 1.52127 2.43495 2.89457 3.19554 3.41589 3.53724 3.81498 3.97738 4.11615 4.14599 4.24711 4.36134 4.51406 4.65689 4.70108 4.77046 4.84405 4.90078 4.96299 4.99562 5.06953 5.15169 5.19271 5.24534 5.50470 5.54563 5.61137 5.62998 5.83045 5.89696 5.96866 6.02419 6.34930 6.93469 7.45839 8.97931 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.050000 B = 0.005996 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.869915 B = 4668.684398 C = 4940.668328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.056 4.056 3 C -0.107 4.107 4 C 0.042 3.958 5 C -0.514 4.514 6 H 0.066 0.934 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.069 3.931 14 N -0.509 5.509 15 C 0.031 3.969 16 C -0.146 4.146 17 C 0.079 3.921 18 H 0.117 0.883 19 F -0.221 7.221 20 C 0.001 3.999 21 H 0.073 0.927 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.033 0.967 25 H 0.039 0.961 26 H 0.069 0.931 27 H -0.014 1.014 28 H -0.017 1.017 29 H 0.260 0.740 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 4.634 16.138 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.056 4.056 3 C -0.164 4.164 4 C 0.004 3.996 5 C -0.552 4.552 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.187 1.187 13 C -0.060 4.060 14 N -0.233 5.233 15 C -0.097 4.097 16 C -0.184 4.184 17 C 0.043 3.957 18 H 0.135 0.865 19 F -0.202 7.202 20 C -0.127 4.127 21 H 0.091 0.909 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.005 0.995 28 H 0.001 0.999 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.044 4.975 15.973 17.005 hybrid contribution -0.507 -0.987 -1.240 1.664 sum -3.551 3.988 14.734 15.671 Atomic orbital electron populations 1.22320 0.94960 1.00775 1.01538 1.20500 0.95512 0.96467 0.93141 1.21561 0.99504 0.94821 1.00497 1.19003 0.94142 0.93949 0.92496 1.21597 1.30275 1.11884 0.91416 0.91593 1.25914 0.95721 0.95879 1.02570 1.70107 1.38862 1.24903 1.24053 0.85573 0.79113 0.78231 0.78920 1.20053 1.21287 1.18706 1.22271 1.00341 0.93375 0.89977 1.64821 1.16698 1.39962 1.01807 1.22953 1.00704 0.96718 0.89318 1.22971 0.97151 0.99497 0.98815 1.22681 0.76686 1.02295 0.94058 0.86509 1.92779 1.38605 1.97080 1.91715 1.24365 0.90160 1.02077 0.96048 0.90882 0.93629 0.93852 0.94791 0.94222 0.91173 0.99543 0.99883 0.93150 0.91604 0.95662 0.88772 0.93808 0.90136 0.87635 0.93055 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 7.17 71.98 0.52 -4.58 16 2 C -0.06 -2.21 0.53 -52.18 -0.03 -2.24 16 3 C -0.11 -3.97 7.70 71.98 0.55 -3.41 16 4 C 0.04 2.16 4.01 29.85 0.12 2.28 16 5 C -0.51 -28.40 7.23 25.60 0.19 -28.21 16 6 H 0.07 3.50 6.05 -2.91 -0.02 3.48 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 8 N -0.94 -57.41 13.29 21.45 0.28 -57.13 16 9 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 13 C 0.07 2.34 4.13 86.30 0.36 2.69 16 14 N -0.51 -13.87 4.41 -882.24 -3.89 -17.76 16 15 C 0.03 0.66 6.69 86.45 0.58 1.24 16 16 C -0.15 -2.57 6.74 31.48 0.21 -2.36 16 17 C 0.08 1.64 4.87 31.80 0.15 1.79 16 18 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 19 F -0.22 -5.37 17.19 44.97 0.77 -4.59 16 20 C 0.00 0.04 4.05 86.59 0.35 0.39 16 21 H 0.07 2.27 5.09 -2.39 -0.01 2.26 16 22 H 0.04 1.91 6.29 -2.39 -0.02 1.89 16 23 H 0.04 1.50 6.32 -2.38 -0.02 1.48 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.04 1.58 6.62 -2.39 -0.02 1.56 16 26 H 0.07 2.21 5.98 -2.39 -0.01 2.19 16 27 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 29 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.07 2.35 8.10 -2.39 -0.02 2.33 16 31 H 0.03 0.88 7.60 -2.38 -0.02 0.86 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 0.99 7.62 -2.39 -0.02 0.97 16 34 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 35 H 0.11 1.37 8.14 -2.38 -0.02 1.36 16 36 H 0.05 1.43 6.22 -2.38 -0.01 1.42 16 37 H 0.10 2.65 4.63 -2.38 -0.01 2.64 16 Total: -1.00 -62.70 280.11 3.70 -59.01 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.04 Total: 6.17 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 3.46 Total: -32.17 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -3.61 Total: -74.89 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.77 Total: -4.59 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -62.70 3.70 -59.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590658751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.657 kcal (2) G-P(sol) polarization free energy of solvation -62.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds