Wall clock time and date at job start Sun Mar 29 2020 21:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47176 * 2 1 4 4 C 1.42898 * 114.00142 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.56544 * 27.32019 * 4 3 2 6 6 C 1.54795 * 110.61337 * 264.51886 * 4 3 2 7 7 O 1.44428 * 104.80315 * 265.47513 * 6 4 3 8 8 C 1.44426 * 105.27191 * 319.40972 * 7 6 4 9 9 C 1.54484 * 104.80434 * 40.51673 * 8 7 6 10 10 H 1.08996 * 110.51155 * 94.80009 * 9 8 7 11 11 N 1.46897 * 110.51063 * 217.37253 * 9 8 7 12 12 C 1.46893 * 111.00104 * 271.69553 * 11 9 8 13 13 C 1.53004 * 109.47285 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47211 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 H 1.08994 * 109.47581 * 59.99956 * 1 2 3 23 23 H 1.09005 * 109.47418 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47068 * 299.99711 * 1 2 3 25 25 H 1.08999 * 109.47068 * 240.00288 * 2 1 3 26 26 H 1.09002 * 109.47254 * 119.99975 * 2 1 3 27 27 H 1.09001 * 110.43701 * 146.60798 * 6 4 3 28 28 H 1.08995 * 110.31039 * 24.27026 * 6 4 3 29 29 H 1.08995 * 110.37524 * 281.68132 * 8 7 6 30 30 H 1.09005 * 110.46235 * 159.39053 * 8 7 6 31 31 H 1.00908 * 111.00037 * 35.64575 * 11 9 8 32 32 H 1.09000 * 109.47823 * 59.99694 * 12 11 9 33 33 H 1.09007 * 109.47029 * 299.99462 * 12 11 9 34 34 H 1.09000 * 109.47211 * 59.98987 * 13 12 11 35 35 H 1.09007 * 109.46376 * 299.99529 * 13 12 11 36 36 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8843 0.5864 -0.4675 6 6 3.9625 1.6414 1.4430 7 8 4.0830 3.0703 1.6151 8 6 4.6135 3.5607 0.3645 9 6 3.8718 2.7521 -0.7230 10 1 3.0034 3.3036 -1.0832 11 7 4.7768 2.4355 -1.8360 12 6 4.7730 3.5086 -2.8392 13 6 5.7245 3.1433 -3.9803 14 6 5.7201 4.2438 -5.0098 15 1 5.1003 5.1163 -4.8649 16 6 6.5027 4.1340 -6.1396 17 7 7.2572 3.0714 -6.3162 18 14 6.4913 5.4946 -7.4194 19 1 7.5415 6.4919 -7.0911 20 1 6.7607 4.9155 -8.7601 21 1 5.1629 6.1582 -7.4247 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.9356 1.1625 1.5529 28 1 3.2534 1.2311 2.1620 29 1 5.6863 3.3762 0.3090 30 1 4.4060 4.6250 0.2537 31 1 5.7119 2.2562 -1.5019 32 1 5.1003 4.4397 -2.3766 33 1 3.7645 3.6337 -3.2336 34 1 5.3968 2.2122 -4.4427 35 1 6.7331 3.0179 -3.5862 36 1 7.8074 2.9940 -7.1113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590763525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:45 Heat of formation + Delta-G solvation = -100.408100 kcal Electronic energy + Delta-G solvation = -16128.329532 eV Core-core repulsion = 13419.261731 eV Total energy + Delta-G solvation = -2709.067802 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.84316 -37.22471 -35.62417 -33.02842 -31.65310 -30.19810 -28.61055 -27.24277 -24.00896 -23.29346 -22.33827 -20.86176 -20.48661 -17.18329 -16.57772 -16.21657 -16.04911 -15.30380 -15.13496 -14.52910 -14.22482 -13.76374 -13.53598 -13.00319 -12.78130 -12.44170 -12.24987 -11.86186 -11.84639 -11.51008 -11.24543 -11.11188 -10.96589 -10.76509 -10.55164 -10.11504 -10.04773 -9.53993 -9.30768 -9.17585 -8.38090 -7.93501 -6.02277 -4.05058 3.31046 3.37372 3.40740 3.51074 3.91451 4.42816 4.58385 4.73284 4.92018 4.98397 5.08705 5.11833 5.20743 5.25669 5.32206 5.34030 5.54101 5.59609 5.69972 5.78450 5.83469 5.92133 6.02151 6.27317 6.33164 6.65137 6.90876 7.21760 7.38637 7.65642 7.74009 7.86570 8.02824 8.39590 9.01946 9.59104 11.09180 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.033945 B = 0.004919 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.677814 B = 5690.578103 C = 6131.751348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.372 6.372 4 C 0.063 3.937 5 H 0.089 0.911 6 C 0.024 3.976 7 O -0.371 6.371 8 C 0.019 3.981 9 C 0.057 3.943 10 H 0.101 0.899 11 N -0.679 5.679 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.338 0.662 32 H 0.019 0.981 33 H 0.061 0.939 34 H 0.026 0.974 35 H 0.014 0.986 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 -5.394 14.064 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.291 6.291 4 C 0.004 3.996 5 H 0.107 0.893 6 C -0.053 4.053 7 O -0.289 6.289 8 C -0.060 4.060 9 C -0.055 4.055 10 H 0.119 0.881 11 N -0.311 5.311 12 C -0.062 4.062 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.157 0.843 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.689 -5.568 13.783 17.218 hybrid contribution 0.841 1.027 -0.483 1.412 sum -7.849 -4.541 13.300 16.097 Atomic orbital electron populations 1.21734 0.93869 1.02057 1.03134 1.22525 0.95524 0.84045 1.00053 1.87944 1.20199 1.26217 1.94766 1.23540 0.81822 0.99714 0.94516 0.89282 1.23997 1.00524 0.83339 0.97488 1.89120 1.85325 1.20026 1.34438 1.24263 0.97588 1.00250 0.83908 1.22971 0.97585 0.93726 0.91178 0.88083 1.60577 1.12751 1.45473 1.12250 1.22238 1.01458 0.89876 0.92616 1.19080 0.93362 0.97447 0.91365 1.21161 1.25534 1.04646 1.04773 0.92689 1.24994 0.95417 0.95761 0.98124 1.69967 1.27442 1.27853 1.28011 0.86578 0.78393 0.82025 0.80908 1.20676 1.21179 1.19849 0.91707 0.91250 0.92032 0.92953 0.93722 0.91561 0.88900 0.91959 0.88763 0.84311 0.96268 0.92019 0.95607 0.96763 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.15 0.38 -1.01 16 2 C 0.06 0.60 6.50 37.15 0.24 0.84 16 3 O -0.37 -5.25 9.99 -35.23 -0.35 -5.60 16 4 C 0.06 0.85 3.41 -24.99 -0.09 0.77 16 5 H 0.09 1.17 7.65 -51.93 -0.40 0.77 16 6 C 0.02 0.29 7.39 38.10 0.28 0.57 16 7 O -0.37 -5.47 11.65 -35.23 -0.41 -5.88 16 8 C 0.02 0.26 7.29 37.94 0.28 0.54 16 9 C 0.06 0.87 3.23 -66.14 -0.21 0.65 16 10 H 0.10 1.67 7.70 -51.93 -0.40 1.27 16 11 N -0.68 -11.75 6.24 -105.07 -0.66 -12.41 16 12 C 0.07 1.36 5.48 -3.83 -0.02 1.34 16 13 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 14 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 29 H 0.06 0.82 7.58 -51.93 -0.39 0.43 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.34 5.50 8.13 -39.29 -0.32 5.19 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 300.07 15.07 4.52 4.52 Total: -1.00 -30.78 300.07 -6.99 -37.77 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.12 Total: 0.35 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 0.30 Total: -9.28 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.08 Total: -38.45 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.76 Total: -11.49 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.78 -6.99 -37.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590763525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.640 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds