Wall clock time and date at job start Sun Mar 29 2020 21:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47176 * 2 1 4 4 C 1.42898 * 114.00142 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.56544 * 27.32019 * 4 3 2 6 6 C 1.54795 * 110.61337 * 264.51886 * 4 3 2 7 7 O 1.44428 * 104.80315 * 265.47513 * 6 4 3 8 8 C 1.44426 * 105.27191 * 319.40972 * 7 6 4 9 9 C 1.54484 * 104.80434 * 40.51673 * 8 7 6 10 10 H 1.08996 * 110.51155 * 94.80009 * 9 8 7 11 11 N 1.46897 * 110.51063 * 217.37253 * 9 8 7 12 12 C 1.46893 * 111.00104 * 271.69553 * 11 9 8 13 13 C 1.53004 * 109.47285 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47211 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 H 1.08994 * 109.47581 * 59.99956 * 1 2 3 23 23 H 1.09005 * 109.47418 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47068 * 299.99711 * 1 2 3 25 25 H 1.08999 * 109.47068 * 240.00288 * 2 1 3 26 26 H 1.09002 * 109.47254 * 119.99975 * 2 1 3 27 27 H 1.09001 * 110.43701 * 146.60798 * 6 4 3 28 28 H 1.08995 * 110.31039 * 24.27026 * 6 4 3 29 29 H 1.08995 * 110.37524 * 281.68132 * 8 7 6 30 30 H 1.09005 * 110.46235 * 159.39053 * 8 7 6 31 31 H 1.00908 * 111.00037 * 35.64575 * 11 9 8 32 32 H 1.09000 * 109.47823 * 59.99694 * 12 11 9 33 33 H 1.09007 * 109.47029 * 299.99462 * 12 11 9 34 34 H 1.09000 * 109.47211 * 59.98987 * 13 12 11 35 35 H 1.09007 * 109.46376 * 299.99529 * 13 12 11 36 36 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8843 0.5864 -0.4675 6 6 3.9625 1.6414 1.4430 7 8 4.0830 3.0703 1.6151 8 6 4.6135 3.5607 0.3645 9 6 3.8718 2.7521 -0.7230 10 1 3.0034 3.3036 -1.0832 11 7 4.7768 2.4355 -1.8360 12 6 4.7730 3.5086 -2.8392 13 6 5.7245 3.1433 -3.9803 14 6 5.7201 4.2438 -5.0098 15 1 5.1003 5.1163 -4.8649 16 6 6.5027 4.1340 -6.1396 17 7 7.2572 3.0714 -6.3162 18 14 6.4913 5.4946 -7.4194 19 1 7.5415 6.4919 -7.0911 20 1 6.7607 4.9155 -8.7601 21 1 5.1629 6.1582 -7.4247 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.9356 1.1625 1.5529 28 1 3.2534 1.2311 2.1620 29 1 5.6863 3.3762 0.3090 30 1 4.4060 4.6250 0.2537 31 1 5.7119 2.2562 -1.5019 32 1 5.1003 4.4397 -2.3766 33 1 3.7645 3.6337 -3.2336 34 1 5.3968 2.2122 -4.4427 35 1 6.7331 3.0179 -3.5862 36 1 7.8074 2.9940 -7.1113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590763525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:44 Heat of formation + Delta-G solvation = -122.831146 kcal Electronic energy + Delta-G solvation = -16129.301868 eV Core-core repulsion = 13419.261731 eV Total energy + Delta-G solvation = -2710.040138 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.94442 -38.24623 -37.14781 -35.02113 -32.73759 -31.71580 -29.70525 -28.75505 -25.89329 -24.24830 -23.33485 -22.55328 -21.81314 -18.57844 -18.15603 -17.59401 -17.10429 -16.51124 -16.45611 -16.13580 -15.58789 -15.06914 -14.84171 -14.45322 -14.12646 -13.64982 -13.48106 -13.26767 -13.01809 -12.90673 -12.74817 -12.50982 -12.37720 -12.16515 -11.98947 -11.82036 -11.42744 -11.28532 -11.05363 -10.57125 -10.42227 -9.35312 -8.20720 -6.31889 1.41125 1.42271 1.53460 2.38611 2.51232 2.85875 3.13265 3.46242 3.57164 3.76909 4.00293 4.04906 4.19912 4.24511 4.41966 4.47638 4.50573 4.51190 4.61299 4.68761 4.75242 4.78261 4.90456 5.03578 5.04886 5.27349 5.42403 5.59874 5.65525 5.76840 6.04785 6.21167 6.31050 6.44881 6.84956 7.37553 8.91379 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.033945 B = 0.004919 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.677814 B = 5690.578103 C = 6131.751348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.395 6.395 4 C 0.065 3.935 5 H 0.093 0.907 6 C 0.026 3.974 7 O -0.387 6.387 8 C 0.023 3.977 9 C 0.056 3.944 10 H 0.085 0.915 11 N -0.680 5.680 12 C 0.085 3.915 13 C 0.032 3.968 14 C -0.545 4.545 15 H 0.060 0.940 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.965 3.035 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.264 1.264 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.345 0.655 32 H 0.027 0.973 33 H 0.055 0.945 34 H -0.005 1.005 35 H -0.004 1.004 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.551 -5.117 14.768 17.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.315 6.315 4 C 0.007 3.993 5 H 0.110 0.890 6 C -0.050 4.050 7 O -0.306 6.306 8 C -0.055 4.055 9 C -0.055 4.055 10 H 0.103 0.897 11 N -0.312 5.312 12 C -0.044 4.044 13 C -0.006 4.006 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.189 1.189 22 H 0.070 0.930 23 H 0.111 0.889 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.165 0.835 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.091 -5.297 14.511 17.924 hybrid contribution 0.935 0.868 -0.668 1.440 sum -8.156 -4.430 13.842 16.666 Atomic orbital electron populations 1.21758 0.92809 1.03436 1.02552 1.22758 0.96456 0.82774 1.00889 1.87917 1.20341 1.28276 1.94935 1.23488 0.81957 0.98682 0.95221 0.88959 1.24137 1.01949 0.82274 0.96689 1.89104 1.85485 1.21495 1.34467 1.24198 0.97867 1.00178 0.83272 1.22957 0.96622 0.95122 0.90837 0.89660 1.60450 1.13669 1.44237 1.12884 1.21830 0.99510 0.91019 0.92006 1.18924 0.93455 0.95592 0.92605 1.21603 1.25672 1.05383 1.05717 0.92193 1.25932 0.94865 0.98277 1.00445 1.70094 1.28218 1.29908 1.28869 0.85445 0.78897 0.78851 0.77834 1.19664 1.20744 1.18874 0.92954 0.88906 0.91919 0.93290 0.91654 0.89484 0.87526 0.90970 0.88501 0.83519 0.95477 0.92670 0.98681 0.98540 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.05 0.96 6.50 71.98 0.47 1.42 16 3 O -0.40 -10.74 9.99 -148.98 -1.49 -12.22 16 4 C 0.07 1.68 3.41 31.72 0.11 1.79 16 5 H 0.09 2.29 7.65 -2.39 -0.02 2.27 16 6 C 0.03 0.58 7.39 72.59 0.54 1.12 16 7 O -0.39 -10.71 11.65 -148.98 -1.74 -12.44 16 8 C 0.02 0.62 7.29 72.49 0.53 1.15 16 9 C 0.06 1.65 3.23 45.93 0.15 1.80 16 10 H 0.09 2.81 7.70 -2.39 -0.02 2.79 16 11 N -0.68 -23.34 6.24 -486.33 -3.03 -26.37 16 12 C 0.08 3.51 5.48 86.31 0.47 3.99 16 13 C 0.03 1.67 5.23 29.85 0.16 1.82 16 14 C -0.55 -30.96 9.11 25.60 0.23 -30.72 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.00 0.17 5.46 84.65 0.46 0.63 16 17 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 18 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 22 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 1.01 8.11 -2.39 -0.02 0.99 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.11 2.06 8.09 -2.39 -0.02 2.04 16 29 H 0.07 1.78 7.58 -2.39 -0.02 1.76 16 30 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.35 11.04 8.13 -89.69 -0.73 10.31 16 32 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 2.34 8.08 -2.38 -0.02 2.33 16 34 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -65.42 300.07 0.22 -65.20 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.31 Total: 14.66 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 3.85 Total: -18.79 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -2.75 Total: -82.52 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -3.22 Total: -24.67 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -65.42 0.22 -65.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590763525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.628 kcal (2) G-P(sol) polarization free energy of solvation -65.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds