Wall clock time and date at job start Sun Mar 29 2020 22:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47096 * 2 1 4 4 C 1.52996 * 109.47425 * 239.99997 * 2 1 3 5 5 C 1.50703 * 109.47258 * 174.99635 * 4 2 1 6 6 H 1.07998 * 119.99612 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99957 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99825 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99834 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47163 * 90.00258 * 9 7 5 11 11 H 1.48503 * 109.46861 * 209.99972 * 9 7 5 12 12 H 1.48503 * 109.47395 * 329.99784 * 9 7 5 13 13 S 1.81401 * 109.47197 * 119.99569 * 2 1 3 14 14 C 1.81400 * 103.00184 * 292.73117 * 13 2 1 15 15 H 1.08997 * 109.57433 * 53.06899 * 14 13 2 16 16 C 1.53178 * 109.52250 * 292.90596 * 14 13 2 17 17 C 1.53170 * 109.03561 * 183.11551 * 16 14 13 18 18 C 1.53091 * 109.21735 * 56.95135 * 17 16 14 19 19 O 1.42913 * 109.40998 * 302.48671 * 18 17 16 20 20 C 1.42905 * 114.15099 * 61.06166 * 19 18 17 21 21 H 1.08996 * 109.47536 * 65.39448 * 1 2 3 22 22 H 1.08999 * 109.46735 * 185.39003 * 1 2 3 23 23 H 1.08996 * 109.47298 * 305.38897 * 1 2 3 24 24 H 1.09003 * 109.47320 * 294.99975 * 4 2 1 25 25 H 1.09004 * 109.47139 * 54.99438 * 4 2 1 26 26 H 0.97000 * 120.00140 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.54285 * 63.24879 * 16 14 13 28 28 H 1.09006 * 109.53986 * 302.98361 * 16 14 13 29 29 H 1.09003 * 109.52522 * 176.88765 * 17 16 14 30 30 H 1.09005 * 109.52395 * 297.01230 * 17 16 14 31 31 H 1.09001 * 109.48208 * 62.40289 * 18 17 16 32 32 H 1.09001 * 109.48331 * 182.44183 * 18 17 16 33 33 H 1.08998 * 109.48437 * 178.89193 * 20 19 18 34 34 H 1.08998 * 109.48121 * 58.85367 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5391 7 6 4.2305 -1.1934 -2.3577 8 7 5.5412 -1.1009 -2.4129 9 14 3.3016 -2.1086 -3.6952 10 1 2.9409 -1.1638 -4.7826 11 1 4.1601 -3.1894 -4.2432 12 1 2.0655 -2.7003 -3.1233 13 16 2.1347 -0.8550 1.4812 14 6 1.6268 0.2507 2.8266 15 1 0.5597 0.4577 2.7460 16 6 2.4114 1.5630 2.7344 17 6 2.0313 2.4566 3.9190 18 6 2.3060 1.7061 5.2248 19 8 1.5712 0.4804 5.2317 20 6 1.9184 -0.4155 4.1739 21 1 -0.3634 0.4279 -0.9343 22 1 -0.3633 -1.0231 0.0965 23 1 -0.3634 0.5951 0.8378 24 1 1.7517 -1.7715 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 6.0257 -1.5083 -3.1478 27 1 2.1653 2.0702 1.8015 28 1 3.4803 1.3517 2.7651 29 1 2.6257 3.3699 3.8919 30 1 0.9726 2.7092 3.8599 31 1 3.3716 1.4904 5.3028 32 1 1.9966 2.3213 6.0697 33 1 1.3297 -1.3285 4.2628 34 1 2.9789 -0.6590 4.2370 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591128859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:22 Heat of formation + Delta-G solvation = -70.812195 kcal Electronic energy + Delta-G solvation = -14382.886056 eV Core-core repulsion = 12020.135838 eV Total energy + Delta-G solvation = -2362.750218 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.13262 -34.73294 -33.59696 -32.06478 -31.10497 -28.04266 -25.06449 -23.60942 -23.08520 -20.50700 -20.16385 -16.71806 -16.53250 -16.09781 -15.58812 -14.79744 -14.74728 -14.36178 -13.93719 -13.34365 -12.88549 -12.60190 -12.51756 -12.27640 -11.94987 -11.74994 -11.28352 -11.17773 -10.97502 -10.83028 -10.48725 -10.10763 -9.94869 -9.70069 -9.46974 -9.26003 -9.01559 -8.52345 -6.95261 -6.01775 -3.99270 2.20294 3.24430 3.30062 3.38366 3.41168 3.93865 4.45591 4.77661 4.84248 4.90743 4.95723 5.24631 5.31818 5.41864 5.50573 5.61514 5.62334 5.73038 5.76413 5.82096 5.87532 5.96311 6.11210 6.25394 6.33411 6.42191 6.54816 7.01193 7.12302 7.22033 7.73532 8.54268 9.05863 9.59286 11.11205 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042506 B = 0.006576 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.578069 B = 4256.643450 C = 4470.146558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.034 4.034 3 H 0.079 0.921 4 C 0.003 3.997 5 C -0.513 4.513 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.266 1.266 13 S -0.218 6.218 14 C -0.109 4.109 15 H 0.085 0.915 16 C -0.115 4.115 17 C -0.153 4.153 18 C 0.059 3.941 19 O -0.381 6.381 20 C 0.085 3.915 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.044 0.956 24 H 0.025 0.975 25 H 0.026 0.974 26 H 0.262 0.738 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 4.971 11.464 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 H 0.098 0.902 4 C -0.036 4.036 5 C -0.552 4.552 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.701 3.299 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.191 1.191 13 S 0.011 5.989 14 C -0.238 4.238 15 H 0.104 0.896 16 C -0.154 4.154 17 C -0.193 4.193 18 C -0.018 4.018 19 O -0.300 6.300 20 C 0.007 3.993 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.063 0.937 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.226 3.872 11.552 14.700 hybrid contribution -0.805 0.796 -1.245 1.683 sum -9.031 4.668 10.307 14.477 Atomic orbital electron populations 1.22164 0.95316 1.02164 1.01050 1.23129 0.95743 1.01668 0.95783 0.90238 1.19495 0.98065 0.95644 0.90367 1.21118 0.89175 1.35237 1.09628 0.90069 1.24976 0.94704 0.95834 0.97746 1.69901 1.06458 1.45377 1.32217 0.86882 0.80386 0.80134 0.82542 1.20363 1.21305 1.19054 1.87100 1.78153 1.33807 0.99818 1.23811 1.02780 0.98889 0.98315 0.89635 1.21892 1.00979 0.94242 0.98302 1.22228 1.02337 0.99088 0.95602 1.22592 0.95963 0.85691 0.97558 1.87927 1.64028 1.28704 1.49363 1.22308 1.01076 0.91978 0.83920 0.92165 0.91901 0.93700 0.95719 0.95594 0.92794 0.91229 0.90358 0.90761 0.91359 0.92996 0.89082 0.88197 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.06 37.16 0.34 -2.01 16 2 C -0.03 -0.68 2.61 -26.73 -0.07 -0.74 16 3 H 0.08 1.57 7.04 -51.92 -0.37 1.21 16 4 C 0.00 0.06 3.51 -27.88 -0.10 -0.04 16 5 C -0.51 -14.42 9.09 -34.44 -0.31 -14.73 16 6 H 0.08 2.47 7.84 -52.49 -0.41 2.06 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 9 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.36 6.54 56.52 0.37 -6.00 16 13 S -0.22 -4.18 19.85 -107.50 -2.13 -6.31 16 14 C -0.11 -1.63 2.69 -26.59 -0.07 -1.70 16 15 H 0.09 1.25 7.11 -51.93 -0.37 0.88 16 16 C -0.11 -1.62 5.20 -26.55 -0.14 -1.76 16 17 C -0.15 -1.72 6.13 -26.60 -0.16 -1.88 16 18 C 0.06 0.65 6.85 37.20 0.25 0.90 16 19 O -0.38 -5.15 10.76 -35.23 -0.38 -5.53 16 20 C 0.08 1.17 6.14 37.21 0.23 1.40 16 21 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.04 0.63 7.10 -51.93 -0.37 0.26 16 24 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 25 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.07 1.03 7.00 -51.93 -0.36 0.66 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 282.00 15.07 4.25 4.25 Total: -1.00 -30.37 282.00 -7.91 -38.28 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.62 Total: -2.00 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -0.13 Total: -18.67 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.99 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.38 Total: -5.53 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: -4.18 SS G_CDS: -2.13 Total: -6.31 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.37 -7.91 -38.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591128859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.532 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds