Wall clock time and date at job start Sun Mar 29 2020 22:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47096 * 2 1 4 4 C 1.52996 * 109.47425 * 239.99997 * 2 1 3 5 5 C 1.50703 * 109.47258 * 174.99635 * 4 2 1 6 6 H 1.07998 * 119.99612 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99957 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99825 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99834 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47163 * 90.00258 * 9 7 5 11 11 H 1.48503 * 109.46861 * 209.99972 * 9 7 5 12 12 H 1.48503 * 109.47395 * 329.99784 * 9 7 5 13 13 S 1.81401 * 109.47197 * 119.99569 * 2 1 3 14 14 C 1.81400 * 103.00184 * 292.73117 * 13 2 1 15 15 H 1.08997 * 109.57433 * 53.06899 * 14 13 2 16 16 C 1.53178 * 109.52250 * 292.90596 * 14 13 2 17 17 C 1.53170 * 109.03561 * 183.11551 * 16 14 13 18 18 C 1.53091 * 109.21735 * 56.95135 * 17 16 14 19 19 O 1.42913 * 109.40998 * 302.48671 * 18 17 16 20 20 C 1.42905 * 114.15099 * 61.06166 * 19 18 17 21 21 H 1.08996 * 109.47536 * 65.39448 * 1 2 3 22 22 H 1.08999 * 109.46735 * 185.39003 * 1 2 3 23 23 H 1.08996 * 109.47298 * 305.38897 * 1 2 3 24 24 H 1.09003 * 109.47320 * 294.99975 * 4 2 1 25 25 H 1.09004 * 109.47139 * 54.99438 * 4 2 1 26 26 H 0.97000 * 120.00140 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.54285 * 63.24879 * 16 14 13 28 28 H 1.09006 * 109.53986 * 302.98361 * 16 14 13 29 29 H 1.09003 * 109.52522 * 176.88765 * 17 16 14 30 30 H 1.09005 * 109.52395 * 297.01230 * 17 16 14 31 31 H 1.09001 * 109.48208 * 62.40289 * 18 17 16 32 32 H 1.09001 * 109.48331 * 182.44183 * 18 17 16 33 33 H 1.08998 * 109.48437 * 178.89193 * 20 19 18 34 34 H 1.08998 * 109.48121 * 58.85367 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5391 7 6 4.2305 -1.1934 -2.3577 8 7 5.5412 -1.1009 -2.4129 9 14 3.3016 -2.1086 -3.6952 10 1 2.9409 -1.1638 -4.7826 11 1 4.1601 -3.1894 -4.2432 12 1 2.0655 -2.7003 -3.1233 13 16 2.1347 -0.8550 1.4812 14 6 1.6268 0.2507 2.8266 15 1 0.5597 0.4577 2.7460 16 6 2.4114 1.5630 2.7344 17 6 2.0313 2.4566 3.9190 18 6 2.3060 1.7061 5.2248 19 8 1.5712 0.4804 5.2317 20 6 1.9184 -0.4155 4.1739 21 1 -0.3634 0.4279 -0.9343 22 1 -0.3633 -1.0231 0.0965 23 1 -0.3634 0.5951 0.8378 24 1 1.7517 -1.7715 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 6.0257 -1.5083 -3.1478 27 1 2.1653 2.0702 1.8015 28 1 3.4803 1.3517 2.7651 29 1 2.6257 3.3699 3.8919 30 1 0.9726 2.7092 3.8599 31 1 3.3716 1.4904 5.3028 32 1 1.9966 2.3213 6.0697 33 1 1.3297 -1.3285 4.2628 34 1 2.9789 -0.6590 4.2370 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591128859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:21 Heat of formation + Delta-G solvation = -89.184431 kcal Electronic energy + Delta-G solvation = -14383.682736 eV Core-core repulsion = 12020.135838 eV Total energy + Delta-G solvation = -2363.546898 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.17662 -36.47122 -34.76217 -34.06835 -32.14519 -29.87184 -26.13169 -24.92489 -24.66596 -22.12790 -21.33539 -18.88759 -17.73258 -17.17682 -16.91310 -16.42561 -16.06208 -15.79420 -15.00708 -14.95410 -14.45230 -14.09706 -13.98927 -13.65968 -13.46697 -13.05195 -12.69448 -12.62473 -12.27851 -12.19042 -11.82421 -11.71535 -11.62453 -11.38867 -11.25598 -10.75629 -10.58788 -10.42597 -8.49321 -8.23609 -6.26916 0.79741 1.34590 1.37755 1.48090 1.80847 2.37150 2.95245 3.10580 3.64694 3.68455 3.92052 4.01014 4.02965 4.17521 4.20546 4.40893 4.51215 4.60302 4.69919 4.76300 4.84214 4.87358 4.91311 4.99521 5.05865 5.06505 5.19164 5.26448 5.38511 5.63338 6.12179 6.31689 6.79608 7.34941 8.91803 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042506 B = 0.006576 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.578069 B = 4256.643450 C = 4470.146558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.027 4.027 3 H 0.071 0.929 4 C 0.005 3.995 5 C -0.514 4.514 6 H 0.040 0.960 7 C 0.004 3.996 8 N -0.951 5.951 9 Si 0.943 3.057 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.249 1.249 13 S -0.281 6.281 14 C -0.086 4.086 15 H 0.096 0.904 16 C -0.116 4.116 17 C -0.144 4.144 18 C 0.052 3.948 19 O -0.388 6.388 20 C 0.089 3.911 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.020 0.980 25 H 0.038 0.962 26 H 0.264 0.736 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.121 5.495 11.908 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 H 0.089 0.911 4 C -0.034 4.034 5 C -0.552 4.552 6 H 0.059 0.941 7 C -0.192 4.192 8 N -0.592 5.592 9 Si 0.767 3.233 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.173 1.173 13 S -0.051 6.051 14 C -0.215 4.215 15 H 0.115 0.885 16 C -0.156 4.156 17 C -0.184 4.184 18 C -0.024 4.024 19 O -0.307 6.307 20 C 0.011 3.989 21 H 0.093 0.907 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.039 0.961 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.569 4.409 12.005 16.591 hybrid contribution -0.012 0.719 -1.259 1.450 sum -10.581 5.128 10.745 15.928 Atomic orbital electron populations 1.22076 0.91896 1.02967 1.02772 1.22985 0.98359 1.00257 0.93974 0.91105 1.19421 0.94929 0.96018 0.92995 1.21363 0.91699 1.33975 1.08205 0.94127 1.25927 0.95539 0.97074 1.00652 1.70064 1.08460 1.47182 1.33503 0.85764 0.79341 0.78830 0.79378 1.18885 1.21332 1.17305 1.87209 1.79461 1.36122 1.02356 1.23790 1.03167 0.97973 0.96544 0.88546 1.21870 0.99768 0.94449 0.99497 1.22196 1.03158 0.99024 0.93985 1.22841 0.96072 0.85046 0.98469 1.87930 1.64472 1.29506 1.48750 1.22234 1.00799 0.92419 0.83456 0.90716 0.91632 0.91582 0.96129 0.94397 0.92736 0.92171 0.92239 0.88906 0.90472 0.92874 0.86247 0.87510 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.06 71.98 0.65 -3.38 16 2 C -0.03 -1.04 2.61 30.59 0.08 -0.96 16 3 H 0.07 2.80 7.04 -2.39 -0.02 2.78 16 4 C 0.00 0.21 3.51 29.85 0.10 0.32 16 5 C -0.51 -29.56 9.09 25.60 0.23 -29.32 16 6 H 0.04 2.60 7.84 -2.91 -0.02 2.57 16 7 C 0.00 0.26 5.47 84.66 0.46 0.72 16 8 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 9 Si 0.94 44.54 27.47 68.60 1.88 46.42 16 10 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 13 S -0.28 -10.80 19.85 -56.49 -1.12 -11.93 16 14 C -0.09 -2.47 2.69 30.69 0.08 -2.39 16 15 H 0.10 2.59 7.11 -2.39 -0.02 2.58 16 16 C -0.12 -3.20 5.20 30.71 0.16 -3.04 16 17 C -0.14 -2.88 6.13 30.68 0.19 -2.69 16 18 C 0.05 1.01 6.85 72.01 0.49 1.50 16 19 O -0.39 -9.60 10.76 -148.98 -1.60 -11.21 16 20 C 0.09 2.35 6.14 72.01 0.44 2.79 16 21 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 22 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.07 1.65 7.10 -2.39 -0.02 1.63 16 24 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 25 H 0.04 1.67 7.57 -2.38 -0.02 1.66 16 26 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 27 H 0.06 1.75 7.00 -2.39 -0.02 1.73 16 28 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -66.64 282.00 3.35 -63.29 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.99 Total: 9.94 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 2.90 Total: -36.44 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.30 Total: -60.07 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.60 Total: -11.21 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Atomic # 16 Polarization: -10.80 SS G_CDS: -1.12 Total: -11.93 kcal Total: -66.64 3.35 -63.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591128859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.898 kcal (2) G-P(sol) polarization free energy of solvation -66.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds