Wall clock time and date at job start Sun Mar 29 2020 22:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53002 * 109.46886 * 119.99346 * 2 1 3 5 5 C 1.50706 * 109.47153 * 184.99546 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 S 1.81395 * 109.47152 * 239.99352 * 2 1 3 14 14 C 1.81404 * 102.99972 * 64.99994 * 13 2 1 15 15 H 1.09003 * 109.52064 * 304.87929 * 14 13 2 16 16 C 1.53175 * 109.52422 * 184.68560 * 14 13 2 17 17 C 1.53173 * 109.03606 * 183.11782 * 16 14 13 18 18 C 1.53093 * 109.16740 * 56.97660 * 17 16 14 19 19 O 1.42902 * 109.41521 * 302.39522 * 18 17 16 20 20 C 1.42904 * 114.09959 * 61.15342 * 19 18 17 21 21 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46878 * 300.00364 * 1 2 3 23 23 H 1.09001 * 109.46923 * 60.00438 * 1 2 3 24 24 H 1.09004 * 109.47178 * 65.00336 * 4 2 1 25 25 H 1.08993 * 109.47411 * 305.00018 * 4 2 1 26 26 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 27 27 H 1.09004 * 109.53992 * 302.98177 * 16 14 13 28 28 H 1.08997 * 109.54265 * 63.24489 * 16 14 13 29 29 H 1.08998 * 109.51999 * 297.07095 * 17 16 14 30 30 H 1.09004 * 109.57699 * 176.91896 * 17 16 14 31 31 H 1.08997 * 109.48111 * 182.40579 * 18 17 16 32 32 H 1.09008 * 109.47430 * 62.37518 * 18 17 16 33 33 H 1.08997 * 109.47888 * 178.85304 * 20 19 18 34 34 H 1.09007 * 109.47426 * 58.82773 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0856 0.5396 7 6 4.2304 -1.1934 2.3579 8 7 3.5760 -1.8334 3.3023 9 14 6.0921 -1.0611 2.4369 10 1 6.5866 -1.7559 3.6526 11 1 6.6848 -1.6922 1.2304 12 1 6.4847 0.3700 2.4905 13 16 2.1346 -0.8553 -1.4810 14 6 1.5664 0.2150 -2.8309 15 1 0.4887 0.3585 -2.7530 16 6 1.9016 -0.4362 -4.1762 17 6 1.4879 0.5111 -5.3066 18 6 2.1953 1.8559 -5.1197 19 8 1.8653 2.3920 -3.8368 20 6 2.2708 1.5712 -2.7396 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.7516 -1.7714 1.2058 25 1 1.6053 -0.2616 2.1370 26 1 2.6093 -1.9019 3.2614 27 1 2.9736 -0.6251 -4.2328 28 1 1.3587 -1.3765 -4.2714 29 1 0.4085 0.6606 -5.2799 30 1 1.7722 0.0802 -6.2667 31 1 1.8718 2.5479 -5.8972 32 1 3.2737 1.7116 -5.1870 33 1 2.0017 2.0584 -1.8024 34 1 3.3502 1.4234 -2.7757 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591128861.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:25 Heat of formation + Delta-G solvation = -78.819401 kcal Electronic energy + Delta-G solvation = -14403.613221 eV Core-core repulsion = 12040.515785 eV Total energy + Delta-G solvation = -2363.097437 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.16009 -34.82295 -33.66609 -32.19235 -31.06941 -27.11816 -25.12403 -23.58646 -23.07120 -20.97704 -20.18294 -16.89823 -16.47083 -16.07960 -15.62183 -14.84823 -14.70649 -14.07184 -13.72327 -13.39535 -13.33626 -12.74097 -12.61784 -12.15158 -11.64332 -11.28908 -11.23664 -11.15561 -11.08145 -10.70628 -10.55997 -10.24997 -10.07565 -9.74546 -9.64108 -9.05889 -8.55353 -8.30456 -7.02068 -6.32635 -4.01539 2.19557 3.21522 3.46872 3.49613 3.67606 3.94702 4.57605 4.71197 4.76008 4.83743 4.89200 5.21009 5.37758 5.44166 5.51364 5.56582 5.64721 5.67926 5.70123 5.77515 5.88412 5.89153 6.05579 6.18844 6.26708 6.47759 6.58268 7.13528 7.20247 7.34747 8.17381 8.50593 8.89405 9.68630 11.06989 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033938 B = 0.006929 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.827398 B = 4039.839983 C = 4418.385135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 H 0.075 0.925 4 C 0.026 3.974 5 C -0.593 4.593 6 H 0.057 0.943 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.288 1.288 13 S -0.218 6.218 14 C -0.110 4.110 15 H 0.086 0.914 16 C -0.099 4.099 17 C -0.150 4.150 18 C 0.058 3.942 19 O -0.384 6.384 20 C 0.069 3.931 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.043 0.957 24 H 0.016 0.984 25 H 0.022 0.978 26 H 0.267 0.733 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 5.317 -15.078 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 H 0.093 0.907 4 C -0.012 4.012 5 C -0.631 4.631 6 H 0.075 0.925 7 C -0.188 4.188 8 N -0.551 5.551 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.215 1.215 13 S 0.011 5.989 14 C -0.239 4.239 15 H 0.104 0.896 16 C -0.138 4.138 17 C -0.190 4.190 18 C -0.019 4.019 19 O -0.303 6.303 20 C -0.009 4.009 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.034 0.966 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.674 4.099 -14.194 15.014 hybrid contribution -1.988 1.254 -0.824 2.491 sum -4.662 5.354 -15.018 16.611 Atomic orbital electron populations 1.22136 0.95351 1.02222 1.00854 1.23237 0.95859 1.01393 0.96270 0.90660 1.19130 0.97586 0.94978 0.89470 1.22030 0.91192 1.38556 1.11365 0.92494 1.25805 1.06867 0.93512 0.92628 1.70796 1.10194 1.40152 1.33967 0.83563 0.74502 0.76255 0.76116 1.20884 1.21328 1.21486 1.87205 1.75635 1.36633 0.99393 1.23829 1.03218 0.98600 0.98233 0.89596 1.21354 1.02422 0.98445 0.91540 1.22199 1.01582 0.96375 0.98826 1.22575 0.98652 0.94880 0.85751 1.87926 1.81835 1.46433 1.14114 1.22998 0.98686 0.89564 0.89686 0.91991 0.92209 0.93749 0.96550 0.96020 0.92274 0.90906 0.90761 0.91127 0.90640 0.89097 0.93097 0.88789 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.10 37.16 0.34 -2.17 16 2 C -0.04 -0.80 2.55 -26.73 -0.07 -0.87 16 3 H 0.08 1.55 7.00 -51.93 -0.36 1.18 16 4 C 0.03 0.67 3.76 -27.88 -0.10 0.56 16 5 C -0.59 -16.73 8.53 -34.44 -0.29 -17.02 16 6 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 7 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 8 N -0.91 -28.15 13.65 55.43 0.76 -27.39 16 9 Si 1.07 25.71 29.90 -169.99 -5.08 20.63 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 S -0.22 -4.26 19.88 -107.50 -2.14 -6.40 16 14 C -0.11 -1.66 2.63 -26.59 -0.07 -1.73 16 15 H 0.09 1.29 6.94 -51.92 -0.36 0.93 16 16 C -0.10 -1.26 5.32 -26.55 -0.14 -1.40 16 17 C -0.15 -1.55 6.14 -26.59 -0.16 -1.71 16 18 C 0.06 0.64 6.84 37.21 0.25 0.89 16 19 O -0.38 -5.49 10.77 -35.23 -0.38 -5.87 16 20 C 0.07 1.04 6.00 37.21 0.22 1.27 16 21 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.04 0.67 6.80 -51.93 -0.35 0.32 16 24 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 25 H 0.02 0.57 8.00 -51.93 -0.42 0.16 16 26 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.09 1.47 6.91 -51.93 -0.36 1.11 16 34 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 283.61 15.07 4.27 4.27 Total: -1.00 -30.66 283.61 -8.25 -38.91 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.56 Total: -2.33 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -0.12 Total: -21.83 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.76 Total: -27.39 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.38 Total: -5.87 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.63 kcal Atomic # 16 Polarization: -4.26 SS G_CDS: -2.14 Total: -6.40 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.66 -8.25 -38.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591128861.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.907 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds