Wall clock time and date at job start Sun Mar 29 2020 22:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53002 * 109.46886 * 119.99346 * 2 1 3 5 5 C 1.50706 * 109.47153 * 184.99546 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 S 1.81395 * 109.47152 * 239.99352 * 2 1 3 14 14 C 1.81404 * 102.99972 * 64.99994 * 13 2 1 15 15 H 1.09003 * 109.52064 * 304.87929 * 14 13 2 16 16 C 1.53175 * 109.52422 * 184.68560 * 14 13 2 17 17 C 1.53173 * 109.03606 * 183.11782 * 16 14 13 18 18 C 1.53093 * 109.16740 * 56.97660 * 17 16 14 19 19 O 1.42902 * 109.41521 * 302.39522 * 18 17 16 20 20 C 1.42904 * 114.09959 * 61.15342 * 19 18 17 21 21 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46878 * 300.00364 * 1 2 3 23 23 H 1.09001 * 109.46923 * 60.00438 * 1 2 3 24 24 H 1.09004 * 109.47178 * 65.00336 * 4 2 1 25 25 H 1.08993 * 109.47411 * 305.00018 * 4 2 1 26 26 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 27 27 H 1.09004 * 109.53992 * 302.98177 * 16 14 13 28 28 H 1.08997 * 109.54265 * 63.24489 * 16 14 13 29 29 H 1.08998 * 109.51999 * 297.07095 * 17 16 14 30 30 H 1.09004 * 109.57699 * 176.91896 * 17 16 14 31 31 H 1.08997 * 109.48111 * 182.40579 * 18 17 16 32 32 H 1.09008 * 109.47430 * 62.37518 * 18 17 16 33 33 H 1.08997 * 109.47888 * 178.85304 * 20 19 18 34 34 H 1.09007 * 109.47426 * 58.82773 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0856 0.5396 7 6 4.2304 -1.1934 2.3579 8 7 3.5760 -1.8334 3.3023 9 14 6.0921 -1.0611 2.4369 10 1 6.5866 -1.7559 3.6526 11 1 6.6848 -1.6922 1.2304 12 1 6.4847 0.3700 2.4905 13 16 2.1346 -0.8553 -1.4810 14 6 1.5664 0.2150 -2.8309 15 1 0.4887 0.3585 -2.7530 16 6 1.9016 -0.4362 -4.1762 17 6 1.4879 0.5111 -5.3066 18 6 2.1953 1.8559 -5.1197 19 8 1.8653 2.3920 -3.8368 20 6 2.2708 1.5712 -2.7396 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.7516 -1.7714 1.2058 25 1 1.6053 -0.2616 2.1370 26 1 2.6093 -1.9019 3.2614 27 1 2.9736 -0.6251 -4.2328 28 1 1.3587 -1.3765 -4.2714 29 1 0.4085 0.6606 -5.2799 30 1 1.7722 0.0802 -6.2667 31 1 1.8718 2.5479 -5.8972 32 1 3.2737 1.7116 -5.1870 33 1 2.0017 2.0584 -1.8024 34 1 3.3502 1.4234 -2.7757 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591128861.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:25 Heat of formation + Delta-G solvation = -96.745665 kcal Electronic energy + Delta-G solvation = -14404.390563 eV Core-core repulsion = 12040.515785 eV Total energy + Delta-G solvation = -2363.874778 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.20422 -36.74205 -34.72255 -34.13500 -32.15019 -29.02743 -26.15920 -25.18440 -24.57903 -22.63797 -21.30375 -18.99855 -17.72059 -17.16468 -17.00962 -16.15240 -15.81425 -15.68202 -15.35391 -15.18129 -14.71448 -14.07685 -13.68563 -13.51527 -13.28740 -13.05747 -12.77250 -12.57837 -12.38173 -12.18048 -11.99962 -11.83793 -11.59047 -11.33402 -10.84476 -10.70369 -10.54220 -10.35865 -8.69024 -8.55086 -6.33837 0.74713 1.51786 1.60288 1.72006 1.79274 2.57147 2.92987 3.19126 3.61678 3.63502 3.91433 3.94062 4.00980 4.10462 4.15953 4.34287 4.43755 4.57494 4.64638 4.73750 4.76253 4.83745 4.86850 4.97347 5.01737 5.05719 5.12229 5.25067 5.29848 5.97953 6.11954 6.21441 6.58726 7.44654 8.75354 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033938 B = 0.006929 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.827398 B = 4039.839983 C = 4418.385135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 H 0.073 0.927 4 C 0.030 3.970 5 C -0.598 4.598 6 H 0.055 0.945 7 C -0.039 4.039 8 N -0.941 5.941 9 Si 1.113 2.887 10 H -0.284 1.284 11 H -0.272 1.272 12 H -0.268 1.268 13 S -0.268 6.268 14 C -0.088 4.088 15 H 0.092 0.908 16 C -0.100 4.100 17 C -0.141 4.141 18 C 0.048 3.952 19 O -0.396 6.396 20 C 0.074 3.926 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.069 0.931 24 H -0.008 1.008 25 H 0.006 0.994 26 H 0.254 0.746 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 6.290 -17.357 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 H 0.091 0.909 4 C -0.008 4.008 5 C -0.637 4.637 6 H 0.073 0.927 7 C -0.236 4.236 8 N -0.579 5.579 9 Si 0.934 3.066 10 H -0.210 1.210 11 H -0.198 1.198 12 H -0.193 1.193 13 S -0.038 6.038 14 C -0.217 4.217 15 H 0.110 0.890 16 C -0.138 4.138 17 C -0.180 4.180 18 C -0.028 4.028 19 O -0.315 6.315 20 C -0.005 4.005 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.010 0.990 25 H 0.024 0.976 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.602 5.086 -16.486 17.447 hybrid contribution -2.053 0.981 -0.229 2.287 sum -4.655 6.067 -16.715 18.381 Atomic orbital electron populations 1.22044 0.92566 1.02563 1.02449 1.23012 0.98111 1.00274 0.94676 0.90882 1.18986 0.96384 0.93932 0.91522 1.22363 0.92745 1.37666 1.10892 0.92678 1.27291 1.11093 0.92854 0.92337 1.70924 1.09537 1.42184 1.35276 0.82989 0.69569 0.77487 0.76527 1.20983 1.19778 1.19302 1.87248 1.76746 1.38579 1.01269 1.23848 1.03209 0.97616 0.96994 0.88977 1.21421 1.02275 0.99222 0.90927 1.22176 1.01755 0.95253 0.98818 1.22894 0.99291 0.95909 0.84700 1.87920 1.81942 1.46589 1.15047 1.22809 0.98172 0.89452 0.90046 0.92267 0.91453 0.91250 0.99008 0.97610 0.93668 0.91424 0.90385 0.90644 0.87831 0.86478 0.92625 0.89850 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.10 71.98 0.65 -3.92 16 2 C -0.03 -1.33 2.55 30.59 0.08 -1.25 16 3 H 0.07 3.01 7.00 -2.39 -0.02 2.99 16 4 C 0.03 1.54 3.76 29.85 0.11 1.66 16 5 C -0.60 -34.32 8.53 25.60 0.22 -34.11 16 6 H 0.05 3.12 7.60 -2.91 -0.02 3.10 16 7 C -0.04 -2.29 5.46 84.65 0.46 -1.82 16 8 N -0.94 -59.28 13.65 21.45 0.29 -58.99 16 9 Si 1.11 51.63 29.90 68.60 2.05 53.68 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 13 S -0.27 -10.41 19.88 -56.49 -1.12 -11.53 16 14 C -0.09 -2.50 2.63 30.68 0.08 -2.42 16 15 H 0.09 2.54 6.94 -2.39 -0.02 2.53 16 16 C -0.10 -2.30 5.32 30.71 0.16 -2.14 16 17 C -0.14 -2.37 6.14 30.68 0.19 -2.18 16 18 C 0.05 0.89 6.84 72.01 0.49 1.38 16 19 O -0.40 -10.35 10.77 -148.98 -1.60 -11.95 16 20 C 0.07 2.13 6.00 72.01 0.43 2.56 16 21 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 23 H 0.07 1.96 6.80 -2.39 -0.02 1.94 16 24 H -0.01 -0.47 8.01 -2.39 -0.02 -0.49 16 25 H 0.01 0.32 8.00 -2.39 -0.02 0.30 16 26 H 0.25 16.16 7.22 -92.71 -0.67 15.49 16 27 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.08 2.55 6.91 -2.39 -0.02 2.53 16 34 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -66.64 283.61 3.65 -62.99 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.15 Total: 8.05 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 2.88 Total: -42.24 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.29 Total: -58.99 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -1.60 Total: -11.95 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.68 kcal Atomic # 16 Polarization: -10.41 SS G_CDS: -1.12 Total: -11.53 kcal Total: -66.64 3.65 -62.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591128861.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.759 kcal (2) G-P(sol) polarization free energy of solvation -66.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds