Wall clock time and date at job start Sun Mar 29 2020 22:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47692 * 2 1 4 4 C 1.53001 * 109.47143 * 239.99821 * 2 1 3 5 5 C 1.50702 * 109.47117 * 174.99868 * 4 2 1 6 6 H 1.07998 * 120.00025 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00139 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99731 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00310 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46724 * 60.00249 * 9 7 5 11 11 H 1.48504 * 109.47250 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46969 * 300.00433 * 9 7 5 13 13 S 1.81397 * 109.47041 * 120.00008 * 2 1 3 14 14 C 1.81406 * 103.00150 * 294.99804 * 13 2 1 15 15 C 1.52995 * 109.47014 * 179.97438 * 14 13 2 16 16 H 1.09007 * 110.35208 * 57.86212 * 15 14 13 17 17 C 1.54947 * 110.30771 * 179.97438 * 15 14 13 18 18 C 1.55306 * 100.97824 * 155.34129 * 17 15 14 19 19 C 1.54429 * 102.23000 * 325.92130 * 18 17 15 20 20 O 1.43234 * 107.60919 * 21.29662 * 19 18 17 21 21 H 1.08994 * 109.47485 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47118 * 300.00062 * 1 2 3 23 23 H 1.09000 * 109.46781 * 59.99973 * 1 2 3 24 24 H 1.09002 * 109.47420 * 295.00259 * 4 2 1 25 25 H 1.08998 * 109.47081 * 55.00525 * 4 2 1 26 26 H 0.97003 * 120.00445 * 179.97438 * 8 7 5 27 27 H 1.09005 * 109.46539 * 60.00155 * 14 13 2 28 28 H 1.08994 * 109.46797 * 299.99952 * 14 13 2 29 29 H 1.09002 * 111.12777 * 273.28398 * 17 15 14 30 30 H 1.08995 * 111.12300 * 37.40291 * 17 15 14 31 31 H 1.09001 * 110.84858 * 84.08537 * 18 17 15 32 32 H 1.09006 * 110.84549 * 207.69503 * 18 17 15 33 33 H 1.09007 * 109.79290 * 261.79697 * 19 18 17 34 34 H 1.08999 * 109.92783 * 140.87682 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2305 -1.1936 -2.3577 8 7 3.5765 -1.8379 -3.2994 9 14 6.0922 -1.0623 -2.4361 10 1 6.6838 -1.6883 -1.2264 11 1 6.5872 -1.7623 -3.6487 12 1 6.4855 0.3684 -2.4958 13 16 2.1346 -0.8551 1.4811 14 6 1.5664 0.2154 2.8309 15 6 2.0039 -0.3785 4.1714 16 1 3.0875 -0.4933 4.1995 17 6 1.5286 0.5221 5.3392 18 6 1.4738 -0.5060 6.5021 19 6 1.0397 -1.7981 5.7762 20 8 1.3620 -1.6450 4.3890 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.7516 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1369 26 1 4.0608 -2.2447 -4.0348 27 1 0.4791 0.2881 2.8037 28 1 2.0002 1.2084 2.7142 29 1 2.2514 1.3112 5.5462 30 1 0.5422 0.9394 5.1371 31 1 2.4563 -0.6288 6.9579 32 1 0.7340 -0.2109 7.2462 33 1 -0.0343 -1.9437 5.8924 34 1 1.5754 -2.6534 6.1880 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591129705.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:15 Heat of formation + Delta-G solvation = -68.841113 kcal Electronic energy + Delta-G solvation = -14023.599605 eV Core-core repulsion = 11660.934859 eV Total energy + Delta-G solvation = -2362.664745 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.36109 -34.44415 -32.35065 -31.98376 -31.48766 -27.47858 -25.99435 -23.22065 -21.80774 -21.45010 -20.20556 -16.94835 -16.26640 -15.94179 -15.50558 -14.73146 -14.53865 -14.29484 -13.50972 -13.14397 -12.90270 -12.78594 -12.17771 -11.88830 -11.78316 -11.56843 -11.40809 -11.32204 -10.95992 -10.79139 -10.62133 -10.42670 -10.02980 -9.49301 -9.34987 -9.13938 -8.83958 -8.27768 -6.72837 -5.93639 -3.94016 2.42112 3.39977 3.43517 3.47259 3.50360 3.84102 4.35626 4.53214 4.64852 4.78833 5.07333 5.14152 5.33323 5.43636 5.46838 5.54267 5.64051 5.65183 5.74765 5.79925 5.84597 5.92531 6.05118 6.11780 6.42731 6.69371 6.81218 7.08973 7.59791 7.72554 8.03981 8.43487 9.10233 9.68726 11.17989 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036232 B = 0.005970 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.614325 B = 4688.627407 C = 5097.053859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 H 0.071 0.929 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.278 1.278 13 S -0.214 6.214 14 C -0.108 4.108 15 C 0.101 3.899 16 H 0.079 0.921 17 C -0.149 4.149 18 C -0.155 4.155 19 C 0.048 3.952 20 O -0.364 6.364 21 H 0.062 0.938 22 H 0.039 0.961 23 H 0.057 0.943 24 H 0.026 0.974 25 H 0.031 0.969 26 H 0.260 0.740 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.622 4.787 17.074 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 H 0.089 0.911 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.204 1.204 13 S 0.014 5.986 14 C -0.256 4.256 15 C 0.043 3.957 16 H 0.097 0.903 17 C -0.188 4.188 18 C -0.193 4.193 19 C -0.029 4.029 20 O -0.283 6.283 21 H 0.081 0.919 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.054 3.587 16.798 17.905 hybrid contribution 0.353 1.355 -0.027 1.400 sum -4.700 4.942 16.771 18.105 Atomic orbital electron populations 1.22096 0.95504 1.02233 1.00377 1.23390 0.95962 1.01350 0.97025 0.91084 1.18999 0.96398 0.95681 0.88725 1.21211 0.91606 1.34311 1.07906 0.91978 1.24984 0.98355 0.95336 0.95700 1.69951 1.35588 1.36106 1.12154 0.86645 0.85885 0.78108 0.77336 1.20098 1.21432 1.20352 1.87394 1.74995 1.37297 0.98946 1.23530 1.03789 1.01572 0.96758 1.22638 0.97258 0.83207 0.92590 0.90345 1.23330 1.02715 0.98390 0.94379 1.23121 1.02537 0.95282 0.98361 1.23109 1.00112 0.97299 0.82387 1.88596 1.79424 1.36339 1.23952 0.91916 0.94211 0.92390 0.95538 0.95130 0.93018 0.90463 0.89800 0.89807 0.90276 0.90542 0.90192 0.91611 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.10 37.16 0.34 -2.21 16 2 C -0.05 -1.04 2.77 -26.73 -0.07 -1.11 16 3 H 0.07 1.49 8.14 -51.92 -0.42 1.07 16 4 C 0.04 1.05 4.45 -27.88 -0.12 0.93 16 5 C -0.51 -14.67 8.53 -34.44 -0.29 -14.96 16 6 H 0.06 1.76 7.60 -52.49 -0.40 1.36 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 9 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 S -0.21 -4.47 20.25 -107.50 -2.18 -6.65 16 14 C -0.11 -1.67 5.38 37.15 0.20 -1.47 16 15 C 0.10 1.40 3.45 -25.71 -0.09 1.31 16 16 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 17 C -0.15 -1.46 6.57 -24.48 -0.16 -1.62 16 18 C -0.16 -1.34 7.02 -24.76 -0.17 -1.52 16 19 C 0.05 0.53 7.79 37.91 0.30 0.82 16 20 O -0.36 -5.63 10.81 -35.23 -0.38 -6.01 16 21 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 22 H 0.04 0.61 6.92 -51.93 -0.36 0.25 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.08 1.14 7.14 -51.92 -0.37 0.77 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.74 8.05 -51.93 -0.42 0.32 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 291.46 15.07 4.39 4.39 Total: -1.00 -31.59 291.46 -8.38 -39.98 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -5.76 Total: -4.02 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -0.18 Total: -18.27 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.74 Total: -26.69 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.38 Total: -6.01 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: -4.47 SS G_CDS: -2.18 Total: -6.65 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.59 -8.38 -39.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591129705.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.866 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds