Wall clock time and date at job start Sun Mar 29 2020 22:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47692 * 2 1 4 4 C 1.53001 * 109.47143 * 239.99821 * 2 1 3 5 5 C 1.50702 * 109.47117 * 174.99868 * 4 2 1 6 6 H 1.07998 * 120.00025 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00139 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99731 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00310 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46724 * 60.00249 * 9 7 5 11 11 H 1.48504 * 109.47250 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46969 * 300.00433 * 9 7 5 13 13 S 1.81397 * 109.47041 * 120.00008 * 2 1 3 14 14 C 1.81406 * 103.00150 * 294.99804 * 13 2 1 15 15 C 1.52995 * 109.47014 * 179.97438 * 14 13 2 16 16 H 1.09007 * 110.35208 * 57.86212 * 15 14 13 17 17 C 1.54947 * 110.30771 * 179.97438 * 15 14 13 18 18 C 1.55306 * 100.97824 * 155.34129 * 17 15 14 19 19 C 1.54429 * 102.23000 * 325.92130 * 18 17 15 20 20 O 1.43234 * 107.60919 * 21.29662 * 19 18 17 21 21 H 1.08994 * 109.47485 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47118 * 300.00062 * 1 2 3 23 23 H 1.09000 * 109.46781 * 59.99973 * 1 2 3 24 24 H 1.09002 * 109.47420 * 295.00259 * 4 2 1 25 25 H 1.08998 * 109.47081 * 55.00525 * 4 2 1 26 26 H 0.97003 * 120.00445 * 179.97438 * 8 7 5 27 27 H 1.09005 * 109.46539 * 60.00155 * 14 13 2 28 28 H 1.08994 * 109.46797 * 299.99952 * 14 13 2 29 29 H 1.09002 * 111.12777 * 273.28398 * 17 15 14 30 30 H 1.08995 * 111.12300 * 37.40291 * 17 15 14 31 31 H 1.09001 * 110.84858 * 84.08537 * 18 17 15 32 32 H 1.09006 * 110.84549 * 207.69503 * 18 17 15 33 33 H 1.09007 * 109.79290 * 261.79697 * 19 18 17 34 34 H 1.08999 * 109.92783 * 140.87682 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2305 -1.1936 -2.3577 8 7 3.5765 -1.8379 -3.2994 9 14 6.0922 -1.0623 -2.4361 10 1 6.6838 -1.6883 -1.2264 11 1 6.5872 -1.7623 -3.6487 12 1 6.4855 0.3684 -2.4958 13 16 2.1346 -0.8551 1.4811 14 6 1.5664 0.2154 2.8309 15 6 2.0039 -0.3785 4.1714 16 1 3.0875 -0.4933 4.1995 17 6 1.5286 0.5221 5.3392 18 6 1.4738 -0.5060 6.5021 19 6 1.0397 -1.7981 5.7762 20 8 1.3620 -1.6450 4.3890 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.7516 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1369 26 1 4.0608 -2.2447 -4.0348 27 1 0.4791 0.2881 2.8037 28 1 2.0002 1.2084 2.7142 29 1 2.2514 1.3112 5.5462 30 1 0.5422 0.9394 5.1371 31 1 2.4563 -0.6288 6.9579 32 1 0.7340 -0.2109 7.2462 33 1 -0.0343 -1.9437 5.8924 34 1 1.5754 -2.6534 6.1880 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591129705.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:15 Heat of formation + Delta-G solvation = -87.812923 kcal Electronic energy + Delta-G solvation = -14024.422284 eV Core-core repulsion = 11660.934859 eV Total energy + Delta-G solvation = -2363.487425 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.30919 -36.37756 -34.05768 -33.28278 -32.47281 -29.41960 -27.01984 -25.23270 -22.75633 -22.53297 -21.78833 -18.49161 -17.89116 -17.23251 -16.74559 -16.54284 -15.87057 -15.69330 -14.80679 -14.53144 -14.30289 -13.90637 -13.66062 -13.63025 -13.25809 -12.89508 -12.65057 -12.59573 -12.44466 -12.32539 -12.12588 -11.74888 -11.65574 -11.28763 -11.17012 -10.66398 -10.51083 -10.30536 -8.38310 -8.17495 -6.25305 0.92466 1.39461 1.43535 1.50796 1.96744 2.43155 2.91937 3.17132 3.55969 3.76439 4.00131 4.08761 4.14304 4.21700 4.26181 4.42756 4.52681 4.60322 4.63063 4.85310 4.88216 4.91179 4.98954 5.01760 5.05629 5.19887 5.27064 5.39106 5.55155 5.79775 6.15213 6.22869 6.86370 7.41611 8.94561 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036232 B = 0.005970 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.614325 B = 4688.627407 C = 5097.053859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.037 4.037 3 H 0.075 0.925 4 C 0.046 3.954 5 C -0.524 4.524 6 H 0.062 0.938 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.264 1.264 13 S -0.286 6.286 14 C -0.084 4.084 15 C 0.094 3.906 16 H 0.066 0.934 17 C -0.138 4.138 18 C -0.146 4.146 19 C 0.036 3.964 20 O -0.401 6.401 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.067 0.933 24 H -0.008 1.008 25 H 0.011 0.989 26 H 0.262 0.738 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 6.412 19.234 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 H 0.093 0.907 4 C 0.008 3.992 5 C -0.562 4.562 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.189 1.189 13 S -0.059 6.059 14 C -0.232 4.232 15 C 0.036 3.964 16 H 0.084 0.916 17 C -0.178 4.178 18 C -0.183 4.183 19 C -0.040 4.040 20 O -0.321 6.321 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.010 0.990 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.974 5.223 18.964 20.289 hybrid contribution 0.281 0.824 -0.620 1.068 sum -4.693 6.047 18.344 19.877 Atomic orbital electron populations 1.22005 0.92733 1.02228 1.02332 1.23138 0.98152 1.00338 0.94956 0.90655 1.18809 0.95603 0.94049 0.90748 1.21541 0.92914 1.34023 1.07768 0.91999 1.25897 1.03500 0.94970 0.95348 1.70083 1.37574 1.37110 1.12855 0.85563 0.79730 0.78763 0.77400 1.19784 1.20833 1.18884 1.87558 1.76361 1.40186 1.01770 1.23595 1.04286 1.00791 0.94504 1.22729 0.96681 0.83938 0.93066 0.91582 1.23312 1.03571 0.98286 0.92582 1.23120 1.03734 0.93285 0.98172 1.23353 1.00856 0.98926 0.80863 1.88562 1.79604 1.37331 1.26647 0.92917 0.91164 0.91420 0.98970 0.97106 0.92899 0.89349 0.87985 0.87863 0.89311 0.89768 0.87674 0.90699 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.10 71.98 0.66 -4.00 16 2 C -0.04 -1.60 2.77 30.59 0.08 -1.51 16 3 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 4 C 0.05 2.49 4.45 29.85 0.13 2.62 16 5 C -0.52 -30.66 8.53 25.60 0.22 -30.44 16 6 H 0.06 3.54 7.60 -2.91 -0.02 3.52 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.94 -58.48 13.29 21.45 0.28 -58.19 16 9 Si 0.96 46.07 29.54 68.60 2.03 48.09 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 13 S -0.29 -12.03 20.25 -56.49 -1.14 -13.17 16 14 C -0.08 -2.42 5.38 71.98 0.39 -2.03 16 15 C 0.09 2.43 3.45 31.26 0.11 2.54 16 16 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 17 C -0.14 -2.22 6.57 32.05 0.21 -2.01 16 18 C -0.15 -2.01 7.02 31.87 0.22 -1.79 16 19 C 0.04 0.73 7.79 72.47 0.56 1.29 16 20 O -0.40 -12.04 10.81 -148.98 -1.61 -13.65 16 21 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 22 H 0.07 2.00 6.92 -2.39 -0.02 1.98 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 25 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.09 2.37 7.14 -2.39 -0.02 2.35 16 28 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.29 8.05 -2.39 -0.02 1.27 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -70.05 291.46 3.65 -66.41 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.04 Total: 5.37 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 3.05 Total: -34.86 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.28 Total: -58.19 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -1.61 Total: -13.65 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 16 Polarization: -12.03 SS G_CDS: -1.14 Total: -13.17 kcal Total: -70.05 3.65 -66.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591129705.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.407 kcal (2) G-P(sol) polarization free energy of solvation -70.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds