Wall clock time and date at job start Sun Mar 29 2020 22:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47617 * 2 1 4 4 C 1.53002 * 109.47062 * 120.00479 * 2 1 3 5 5 C 1.50703 * 109.46958 * 184.99922 * 4 2 1 6 6 H 1.07996 * 120.00410 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99967 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00114 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99931 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47004 * 90.00075 * 9 7 5 11 11 H 1.48500 * 109.46904 * 209.99988 * 9 7 5 12 12 H 1.48503 * 109.46867 * 330.00067 * 9 7 5 13 13 S 1.81405 * 109.47106 * 240.00050 * 2 1 3 14 14 C 1.81399 * 102.99706 * 65.00224 * 13 2 1 15 15 C 1.53002 * 109.47162 * 180.02562 * 14 13 2 16 16 H 1.08999 * 109.86914 * 58.99042 * 15 14 13 17 17 C 1.54106 * 109.87686 * 180.02562 * 15 14 13 18 18 C 1.54811 * 104.18579 * 121.45200 * 17 15 14 19 19 C 1.54998 * 102.09333 * 20.87987 * 18 17 15 20 20 O 1.43738 * 109.87566 * 297.82830 * 15 14 13 21 21 H 1.09002 * 109.47297 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46887 * 299.99297 * 1 2 3 23 23 H 1.09000 * 109.47207 * 59.99508 * 1 2 3 24 24 H 1.09000 * 109.47085 * 304.99258 * 4 2 1 25 25 H 1.08999 * 109.47238 * 64.99984 * 4 2 1 26 26 H 0.96996 * 120.00347 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.47089 * 299.99939 * 14 13 2 28 28 H 1.09004 * 109.47568 * 59.99949 * 14 13 2 29 29 H 1.08997 * 110.48317 * 240.12541 * 17 15 14 30 30 H 1.08999 * 110.48972 * 2.64324 * 17 15 14 31 31 H 1.09004 * 110.90430 * 139.07637 * 18 17 15 32 32 H 1.08993 * 110.91045 * 262.68055 * 18 17 15 33 33 H 1.09000 * 110.62019 * 81.47723 * 19 18 17 34 34 H 1.08995 * 110.61709 * 204.47726 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0863 0.5392 7 6 4.2303 -1.1928 2.3582 8 7 5.5411 -1.1005 2.4134 9 14 3.3013 -2.1069 3.6965 10 1 3.1696 -3.5371 3.3192 11 1 4.0451 -1.9992 4.9773 12 1 1.9506 -1.5108 3.8569 13 16 2.1346 -0.8551 -1.4812 14 6 1.5664 0.2154 -2.8309 15 6 2.0039 -0.3783 -4.1714 16 1 1.5877 -1.3791 -4.2868 17 6 1.5262 0.5247 -5.3252 18 6 2.8291 0.9191 -6.0626 19 6 3.8071 -0.1961 -5.6129 20 8 3.4387 -0.4318 -4.2372 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.6054 -0.2618 2.1370 25 1 1.7516 -1.7716 1.2055 26 1 6.0254 -1.5066 3.1491 27 1 0.4791 0.2882 -2.8037 28 1 2.0001 1.2086 -2.7141 29 1 0.8627 -0.0266 -5.9915 30 1 1.0238 1.4095 -4.9344 31 1 2.6860 0.8986 -7.1430 32 1 3.1794 1.8984 -5.7365 33 1 3.6623 -1.0970 -6.2092 34 1 4.8390 0.1483 -5.6803 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591129707.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:18 Heat of formation + Delta-G solvation = -84.529649 kcal Electronic energy + Delta-G solvation = -14090.795746 eV Core-core repulsion = 11727.450695 eV Total energy + Delta-G solvation = -2363.345051 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.32406 -36.41377 -34.14731 -33.32835 -32.39527 -29.89300 -26.92850 -24.92424 -23.15709 -22.33969 -21.64160 -18.88625 -17.72944 -17.15329 -16.73863 -16.42435 -16.28426 -15.61208 -14.91303 -14.48995 -14.28881 -14.19580 -13.80189 -13.57733 -13.40740 -13.00079 -12.65479 -12.57891 -12.36132 -12.04277 -11.89385 -11.68817 -11.60098 -11.41594 -11.24274 -10.78288 -10.70965 -10.40440 -8.38571 -8.21838 -6.26435 0.91103 1.35428 1.37482 1.48153 1.94591 2.37853 2.99478 3.11089 3.61925 3.75864 3.98050 4.03806 4.13847 4.16470 4.22546 4.42480 4.51830 4.58932 4.64906 4.83103 4.88810 4.90774 4.94943 4.96262 5.07509 5.10062 5.21729 5.23078 5.38485 5.64509 6.04750 6.33118 6.80454 7.35008 8.93401 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038361 B = 0.006305 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.738183 B = 4439.828320 C = 4973.275841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 H 0.065 0.935 4 C 0.007 3.993 5 C -0.516 4.516 6 H 0.034 0.966 7 C 0.001 3.999 8 N -0.953 5.953 9 Si 0.948 3.052 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.241 1.241 13 S -0.292 6.292 14 C -0.082 4.082 15 C 0.089 3.911 16 H 0.071 0.929 17 C -0.139 4.139 18 C -0.147 4.147 19 C 0.031 3.969 20 O -0.399 6.399 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.019 0.981 26 H 0.264 0.736 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.936 3.775 -15.923 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 H 0.083 0.917 4 C -0.032 4.032 5 C -0.554 4.554 6 H 0.052 0.948 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.164 1.164 13 S -0.064 6.064 14 C -0.230 4.230 15 C 0.030 3.970 16 H 0.089 0.911 17 C -0.178 4.178 18 C -0.185 4.185 19 C -0.046 4.046 20 O -0.319 6.319 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.131 0.869 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.076 2.752 -15.692 19.991 hybrid contribution -0.190 0.667 0.794 1.054 sum -12.266 3.419 -14.898 19.598 Atomic orbital electron populations 1.22062 0.91442 1.03078 1.02877 1.23032 0.98713 1.00090 0.94492 0.91652 1.19396 0.94706 0.95838 0.93211 1.21390 0.91949 1.34067 1.08041 0.94752 1.26000 0.95594 0.97103 1.00774 1.70086 1.08594 1.47282 1.33506 0.85694 0.79931 0.79226 0.78004 1.19769 1.20891 1.16417 1.87625 1.77973 1.38576 1.02260 1.23672 1.04024 1.00614 0.94671 1.22564 0.81870 0.99204 0.93324 0.91147 1.23011 0.98760 1.00215 0.95796 1.23123 0.94234 0.98919 1.02175 1.23801 1.00336 0.98251 0.82167 1.89087 1.21370 1.93231 1.28245 0.91622 0.90777 0.91096 0.94149 0.96292 0.92722 0.86924 0.90755 0.88091 0.89200 0.87531 0.90821 0.91169 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.10 71.98 0.66 -3.34 16 2 C -0.03 -1.41 2.77 30.59 0.08 -1.32 16 3 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 4 C 0.01 0.32 3.52 29.85 0.10 0.42 16 5 C -0.52 -31.22 9.09 25.60 0.23 -30.99 16 6 H 0.03 2.34 7.84 -2.91 -0.02 2.32 16 7 C 0.00 0.07 5.47 84.66 0.46 0.54 16 8 N -0.95 -62.75 13.96 21.45 0.30 -62.45 16 9 Si 0.95 45.92 27.47 68.60 1.88 47.80 16 10 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 13 S -0.29 -12.27 20.18 -56.49 -1.14 -13.41 16 14 C -0.08 -2.40 5.14 71.98 0.37 -2.03 16 15 C 0.09 2.35 3.46 30.97 0.11 2.46 16 16 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 17 C -0.14 -2.32 6.64 31.59 0.21 -2.11 16 18 C -0.15 -2.37 7.15 31.90 0.23 -2.15 16 19 C 0.03 0.68 7.72 72.67 0.56 1.24 16 20 O -0.40 -13.28 10.87 -148.98 -1.62 -14.90 16 21 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.07 1.70 6.92 -2.39 -0.02 1.68 16 24 H 0.04 1.87 7.20 -2.39 -0.02 1.85 16 25 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 26 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 27 H 0.11 2.58 7.14 -2.39 -0.02 2.56 16 28 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.32 7.70 -2.39 -0.02 1.30 16 31 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -74.96 287.38 3.43 -71.53 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.99 Total: 8.70 kcal Atomic # 6 Polarization: -40.28 SS G_CDS: 3.02 Total: -37.27 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: 0.30 Total: -62.45 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -1.62 Total: -14.90 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.88 Total: 47.80 kcal Atomic # 16 Polarization: -12.27 SS G_CDS: -1.14 Total: -13.41 kcal Total: -74.96 3.43 -71.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591129707.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.004 kcal (2) G-P(sol) polarization free energy of solvation -74.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds