Wall clock time and date at job start Sun Mar 29 2020 22:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00029 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99986 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47247 * 90.00117 * 9 7 5 11 11 H 1.48508 * 109.47156 * 209.99775 * 9 7 5 12 12 H 1.48496 * 109.47338 * 329.99797 * 9 7 5 13 13 S 1.81399 * 109.47147 * 119.99916 * 2 1 3 14 14 C 1.81394 * 103.00187 * 294.99891 * 13 2 1 15 15 C 1.52996 * 109.47389 * 180.02562 * 14 13 2 16 16 H 1.09008 * 110.33327 * 307.24504 * 15 14 13 17 17 C 1.54481 * 110.37290 * 185.00098 * 15 14 13 18 18 C 1.54508 * 104.06327 * 217.18555 * 17 15 14 19 19 C 1.54480 * 104.06348 * 0.02562 * 18 17 15 20 20 O 1.44424 * 110.37498 * 69.61701 * 15 14 13 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 25 25 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 26 26 H 0.97002 * 119.99900 * 180.02562 * 8 7 5 27 27 H 1.09007 * 109.47204 * 300.00198 * 14 13 2 28 28 H 1.09004 * 109.47390 * 59.99926 * 14 13 2 29 29 H 1.08995 * 110.51043 * 335.83218 * 17 15 14 30 30 H 1.09007 * 110.50984 * 98.40796 * 17 15 14 31 31 H 1.09004 * 110.51316 * 118.64373 * 18 17 15 32 32 H 1.08999 * 110.51870 * 241.35280 * 18 17 15 33 33 H 1.09000 * 110.37375 * 142.80763 * 19 18 17 34 34 H 1.09001 * 110.37285 * 265.03467 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 5.5411 -1.1005 -2.4134 9 14 3.3015 -2.1089 -3.6952 10 1 2.9408 -1.1641 -4.7826 11 1 4.1599 -3.1898 -4.2432 12 1 2.0654 -2.7005 -3.1232 13 16 2.1346 -0.8551 1.4811 14 6 1.5665 0.2153 2.8309 15 6 2.0051 -0.3778 4.1713 16 1 1.6868 -1.4175 4.2477 17 6 1.4259 0.4492 5.3405 18 6 2.5532 0.4461 6.3972 19 6 3.6804 -0.3817 5.7411 20 8 3.4379 -0.2759 4.3215 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.7516 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 6.0254 -1.5073 -3.1489 27 1 2.0002 1.2085 2.7141 28 1 0.4792 0.2882 2.8038 29 1 1.2081 1.4670 5.0173 30 1 0.5277 -0.0255 5.7359 31 1 2.8927 1.4626 6.5963 32 1 2.2138 -0.0311 7.3165 33 1 4.6546 0.0376 5.9923 34 1 3.6221 -1.4223 6.0605 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591129708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:20 Heat of formation + Delta-G solvation = -64.101917 kcal Electronic energy + Delta-G solvation = -14050.848668 eV Core-core repulsion = 11688.389429 eV Total energy + Delta-G solvation = -2362.459239 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.30676 -34.59893 -32.31221 -32.00074 -31.44812 -28.03427 -25.95319 -23.05163 -22.13497 -21.12433 -20.16177 -16.68665 -16.58027 -15.91813 -15.52859 -15.21275 -14.46562 -14.19498 -13.68191 -13.22092 -12.70835 -12.58677 -12.46278 -12.09706 -11.87088 -11.76242 -11.60573 -11.24607 -10.94443 -10.76371 -10.74390 -10.13641 -9.83990 -9.69315 -9.60297 -9.17604 -8.94966 -8.45005 -6.77418 -5.93790 -3.90985 2.34557 3.35002 3.39626 3.42962 3.46039 3.93628 4.49902 4.51981 4.67008 4.84561 5.05628 5.18565 5.34506 5.39254 5.44395 5.55714 5.59603 5.66330 5.69867 5.73464 5.79564 5.90066 5.91249 6.06782 6.29139 6.47371 6.59541 6.92596 7.07957 7.29448 7.81314 8.62974 9.15843 9.66942 11.19341 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039280 B = 0.006165 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.657376 B = 4540.909654 C = 5073.793732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 H 0.078 0.922 4 C 0.004 3.996 5 C -0.512 4.512 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.266 1.266 13 S -0.211 6.211 14 C -0.103 4.103 15 C 0.095 3.905 16 H 0.075 0.925 17 C -0.148 4.148 18 C -0.154 4.154 19 C 0.041 3.959 20 O -0.352 6.352 21 H 0.058 0.942 22 H 0.043 0.957 23 H 0.061 0.939 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.261 0.739 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.347 2.742 15.172 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 H 0.097 0.903 4 C -0.034 4.034 5 C -0.550 4.550 6 H 0.100 0.900 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.701 3.299 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.191 1.191 13 S 0.017 5.983 14 C -0.251 4.251 15 C 0.036 3.964 16 H 0.093 0.907 17 C -0.187 4.187 18 C -0.192 4.192 19 C -0.037 4.037 20 O -0.271 6.271 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.443 1.771 14.941 17.763 hybrid contribution -1.188 0.664 -0.698 1.530 sum -10.631 2.435 14.243 17.940 Atomic orbital electron populations 1.22155 0.95465 1.02162 1.00799 1.23156 0.95623 1.01868 0.96475 0.90342 1.19471 0.98052 0.95550 0.90362 1.21154 0.89225 1.35069 1.09583 0.89967 1.24981 0.94696 0.95883 0.97741 1.69916 1.06463 1.45477 1.32146 0.86882 0.80375 0.80117 0.82557 1.20405 1.21353 1.19080 1.87378 1.76101 1.35842 0.98945 1.23444 1.02588 1.02817 0.96281 1.22632 0.82150 0.98714 0.92874 0.90718 1.23008 0.98687 1.01538 0.95471 1.22938 0.96066 1.01502 0.98726 1.23387 0.99047 0.99124 0.82098 1.89343 1.21381 1.94230 1.22154 0.92285 0.93788 0.91983 0.95768 0.95696 0.92867 0.89951 0.89859 0.90539 0.90489 0.90741 0.90735 0.89145 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.10 37.16 0.34 -2.02 16 2 C -0.04 -0.87 2.77 -26.73 -0.07 -0.94 16 3 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 4 C 0.00 0.09 3.51 -27.88 -0.10 0.00 16 5 C -0.51 -14.96 9.09 -34.44 -0.31 -15.27 16 6 H 0.08 2.63 7.84 -52.49 -0.41 2.22 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -28.57 13.96 55.43 0.77 -27.80 16 9 Si 0.87 22.13 27.47 -169.99 -4.67 17.46 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 13 S -0.21 -4.33 20.38 -107.50 -2.19 -6.52 16 14 C -0.10 -1.58 5.25 37.16 0.20 -1.38 16 15 C 0.10 1.32 3.24 -25.96 -0.08 1.23 16 16 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 17 C -0.15 -1.49 6.63 -25.16 -0.17 -1.66 16 18 C -0.15 -1.42 7.09 -25.16 -0.18 -1.60 16 19 C 0.04 0.47 7.63 37.93 0.29 0.76 16 20 O -0.35 -5.76 11.25 -35.23 -0.40 -6.16 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.04 0.60 6.92 -51.93 -0.36 0.24 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 25 H 0.03 0.59 7.57 -51.93 -0.39 0.20 16 26 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 27 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 28 H 0.08 1.08 7.14 -51.92 -0.37 0.71 16 29 H 0.08 0.74 7.87 -51.93 -0.41 0.34 16 30 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 287.88 15.07 4.34 4.34 Total: -1.00 -32.70 287.88 -8.05 -40.75 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.71 Total: -3.13 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -0.19 Total: -18.94 kcal Atomic # 7 Polarization: -28.57 SS G_CDS: 0.77 Total: -27.80 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.40 Total: -6.16 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -2.19 Total: -6.52 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.70 -8.05 -40.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591129708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.356 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds