Wall clock time and date at job start Sun Mar 29 2020 22:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00029 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99986 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47247 * 90.00117 * 9 7 5 11 11 H 1.48508 * 109.47156 * 209.99775 * 9 7 5 12 12 H 1.48496 * 109.47338 * 329.99797 * 9 7 5 13 13 S 1.81399 * 109.47147 * 119.99916 * 2 1 3 14 14 C 1.81394 * 103.00187 * 294.99891 * 13 2 1 15 15 C 1.52996 * 109.47389 * 180.02562 * 14 13 2 16 16 H 1.09008 * 110.33327 * 307.24504 * 15 14 13 17 17 C 1.54481 * 110.37290 * 185.00098 * 15 14 13 18 18 C 1.54508 * 104.06327 * 217.18555 * 17 15 14 19 19 C 1.54480 * 104.06348 * 0.02562 * 18 17 15 20 20 O 1.44424 * 110.37498 * 69.61701 * 15 14 13 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 25 25 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 26 26 H 0.97002 * 119.99900 * 180.02562 * 8 7 5 27 27 H 1.09007 * 109.47204 * 300.00198 * 14 13 2 28 28 H 1.09004 * 109.47390 * 59.99926 * 14 13 2 29 29 H 1.08995 * 110.51043 * 335.83218 * 17 15 14 30 30 H 1.09007 * 110.50984 * 98.40796 * 17 15 14 31 31 H 1.09004 * 110.51316 * 118.64373 * 18 17 15 32 32 H 1.08999 * 110.51870 * 241.35280 * 18 17 15 33 33 H 1.09000 * 110.37375 * 142.80763 * 19 18 17 34 34 H 1.09001 * 110.37285 * 265.03467 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 5.5411 -1.1005 -2.4134 9 14 3.3015 -2.1089 -3.6952 10 1 2.9408 -1.1641 -4.7826 11 1 4.1599 -3.1898 -4.2432 12 1 2.0654 -2.7005 -3.1232 13 16 2.1346 -0.8551 1.4811 14 6 1.5665 0.2153 2.8309 15 6 2.0051 -0.3778 4.1713 16 1 1.6868 -1.4175 4.2477 17 6 1.4259 0.4492 5.3405 18 6 2.5532 0.4461 6.3972 19 6 3.6804 -0.3817 5.7411 20 8 3.4379 -0.2759 4.3215 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.7516 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 6.0254 -1.5073 -3.1489 27 1 2.0002 1.2085 2.7141 28 1 0.4792 0.2882 2.8038 29 1 1.2081 1.4670 5.0173 30 1 0.5277 -0.0255 5.7359 31 1 2.8927 1.4626 6.5963 32 1 2.2138 -0.0311 7.3165 33 1 4.6546 0.0376 5.9923 34 1 3.6221 -1.4223 6.0605 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591129708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:20 Heat of formation + Delta-G solvation = -85.186296 kcal Electronic energy + Delta-G solvation = -14051.762955 eV Core-core repulsion = 11688.389429 eV Total energy + Delta-G solvation = -2363.373526 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30150 -36.41644 -34.14822 -33.29240 -32.44749 -29.89234 -26.97933 -24.92499 -23.16280 -22.25534 -21.67639 -18.88882 -17.72898 -17.15573 -16.59557 -16.49654 -16.33827 -15.70780 -14.92249 -14.57420 -14.26169 -14.18913 -13.85103 -13.48746 -13.35831 -13.00688 -12.61706 -12.56888 -12.47481 -12.11228 -11.77679 -11.73668 -11.49729 -11.40760 -11.32179 -10.80553 -10.73051 -10.45737 -8.40635 -8.22132 -6.26645 0.89029 1.34580 1.38275 1.49110 1.91939 2.37985 2.97864 3.10912 3.60956 3.78465 3.99694 4.03766 4.13811 4.18171 4.22398 4.42721 4.52564 4.55714 4.59979 4.84015 4.87760 4.89715 4.95356 4.96215 5.06777 5.11579 5.19457 5.22428 5.39480 5.64493 5.96175 6.32893 6.80327 7.34932 8.93320 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039280 B = 0.006165 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.657376 B = 4540.909654 C = 5073.793732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.033 4.033 3 H 0.065 0.935 4 C 0.006 3.994 5 C -0.517 4.517 6 H 0.034 0.966 7 C 0.001 3.999 8 N -0.953 5.953 9 Si 0.949 3.051 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.248 1.248 13 S -0.294 6.294 14 C -0.077 4.077 15 C 0.088 3.912 16 H 0.072 0.928 17 C -0.138 4.138 18 C -0.146 4.146 19 C 0.029 3.971 20 O -0.400 6.400 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.021 0.979 25 H 0.039 0.961 26 H 0.264 0.736 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 2.913 15.941 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 H 0.084 0.916 4 C -0.032 4.032 5 C -0.555 4.555 6 H 0.052 0.948 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.172 1.172 13 S -0.067 6.067 14 C -0.225 4.225 15 C 0.029 3.971 16 H 0.090 0.910 17 C -0.178 4.178 18 C -0.184 4.184 19 C -0.047 4.047 20 O -0.319 6.319 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.039 0.961 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.134 0.866 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.467 1.955 15.720 20.159 hybrid contribution -0.159 0.665 -0.800 1.053 sum -12.627 2.620 14.919 19.720 Atomic orbital electron populations 1.22065 0.91363 1.03093 1.02954 1.23028 0.98759 1.00060 0.94371 0.91610 1.19398 0.94671 0.96007 0.93111 1.21389 0.91965 1.34029 1.08112 0.94781 1.26002 0.95597 0.97079 1.00797 1.70091 1.08628 1.47246 1.33509 0.85684 0.79270 0.78751 0.79102 1.18658 1.21244 1.17167 1.87565 1.78111 1.38591 1.02407 1.23497 1.04177 1.00668 0.94186 1.22800 0.81608 0.99326 0.93354 0.91039 1.22994 0.99632 1.01295 0.93830 1.22929 0.94611 1.01672 0.99162 1.23638 1.00513 1.00260 0.80300 1.89301 1.23017 1.94507 1.25118 0.90681 0.91057 0.91625 0.96087 0.94265 0.92721 0.90661 0.86622 0.89926 0.87907 0.90050 0.88177 0.88745 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.10 71.98 0.66 -3.30 16 2 C -0.03 -1.35 2.77 30.59 0.08 -1.27 16 3 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 4 C 0.01 0.30 3.51 29.85 0.10 0.41 16 5 C -0.52 -31.17 9.09 25.60 0.23 -30.94 16 6 H 0.03 2.32 7.84 -2.91 -0.02 2.29 16 7 C 0.00 0.07 5.47 84.65 0.46 0.54 16 8 N -0.95 -62.66 13.96 21.45 0.30 -62.36 16 9 Si 0.95 45.77 27.47 68.60 1.88 47.66 16 10 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 13 S -0.29 -12.28 20.38 -56.49 -1.15 -13.43 16 14 C -0.08 -2.27 5.25 71.98 0.38 -1.90 16 15 C 0.09 2.32 3.24 31.10 0.10 2.42 16 16 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 17 C -0.14 -2.36 6.63 31.61 0.21 -2.15 16 18 C -0.15 -2.28 7.09 31.61 0.22 -2.05 16 19 C 0.03 0.65 7.63 72.49 0.55 1.21 16 20 O -0.40 -13.19 11.25 -148.98 -1.68 -14.86 16 21 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.07 1.69 6.92 -2.39 -0.02 1.67 16 23 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 24 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 25 H 0.04 1.79 7.57 -2.38 -0.02 1.77 16 26 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 27 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.12 2.63 7.14 -2.39 -0.02 2.61 16 29 H 0.08 1.33 7.87 -2.39 -0.02 1.31 16 30 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -74.62 287.88 3.35 -71.27 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.99 Total: 8.76 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 3.01 Total: -37.03 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.30 Total: -62.36 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -1.68 Total: -14.86 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.66 kcal Atomic # 16 Polarization: -12.28 SS G_CDS: -1.15 Total: -13.43 kcal Total: -74.62 3.35 -71.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591129708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.915 kcal (2) G-P(sol) polarization free energy of solvation -74.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds