Wall clock time and date at job start Sun Mar 29 2020 22:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48497 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47229 * 300.00494 * 3 2 1 6 6 H 1.48503 * 109.47203 * 60.00034 * 3 2 1 7 7 C 1.37873 * 120.00463 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00285 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99956 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47461 * 179.97438 * 9 7 2 11 11 C 1.81392 * 103.00236 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47500 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47540 * 179.97438 * 12 11 10 14 14 C 1.53175 * 109.53913 * 65.44548 * 13 12 11 15 15 C 1.53092 * 109.16179 * 176.85000 * 14 13 12 16 16 O 1.42910 * 109.41107 * 302.39040 * 15 14 13 17 17 C 1.42900 * 114.09727 * 61.16189 * 16 15 14 18 18 C 1.53090 * 109.41229 * 298.83586 * 17 16 15 19 19 H 0.97003 * 120.00366 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.47385 * 59.99749 * 9 7 2 21 21 H 1.09000 * 109.46762 * 300.00072 * 9 7 2 22 22 H 1.09009 * 109.47060 * 60.00024 * 11 10 9 23 23 H 1.09005 * 109.47341 * 300.00263 * 11 10 9 24 24 H 1.09005 * 109.46474 * 59.99927 * 12 11 10 25 25 H 1.09005 * 109.47030 * 300.00444 * 12 11 10 26 26 H 1.08997 * 109.61228 * 305.22843 * 13 12 11 27 27 H 1.09006 * 109.52647 * 296.75300 * 14 13 12 28 28 H 1.08998 * 109.52537 * 56.94192 * 14 13 12 29 29 H 1.08998 * 109.48147 * 182.40843 * 15 14 13 30 30 H 1.08997 * 109.48550 * 62.37144 * 15 14 13 31 31 H 1.09003 * 109.47953 * 178.86010 * 17 16 15 32 32 H 1.08995 * 109.49265 * 58.82602 * 17 16 15 33 33 H 1.09001 * 109.52724 * 297.70937 * 18 17 16 34 34 H 1.09000 * 109.52338 * 177.51272 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 16 2.4300 -3.8779 -0.0029 11 6 1.3518 -5.3366 -0.0034 12 6 2.2086 -6.6042 -0.0039 13 6 1.2992 -7.8346 -0.0036 14 6 0.5119 -7.8899 -1.3164 15 6 -0.3356 -9.1647 -1.3407 16 8 0.5147 -10.3032 -1.1888 17 6 1.2404 -10.3294 0.0419 18 6 2.1512 -9.1014 0.1217 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5563 -0.8920 21 1 0.6242 -2.5574 0.8880 22 1 0.7223 -5.3229 -0.8933 23 1 0.7229 -5.3239 0.8868 24 1 2.8378 -6.6176 0.8862 25 1 2.8379 -6.6171 -0.8938 26 1 0.6058 -7.7769 0.8353 27 1 -0.1390 -7.0184 -1.3878 28 1 1.2055 -7.8975 -2.1572 29 1 -0.8654 -9.2308 -2.2909 30 1 -1.0564 -9.1377 -0.5236 31 1 1.8460 -11.2346 0.0877 32 1 0.5404 -10.3177 0.8773 33 1 2.8779 -9.1334 -0.6900 34 1 2.6727 -9.0963 1.0789 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591132955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:08 Heat of formation + Delta-G solvation = -83.524541 kcal Electronic energy + Delta-G solvation = -13743.883656 eV Core-core repulsion = 11380.582190 eV Total energy + Delta-G solvation = -2363.301467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.55406 -35.59492 -33.13952 -31.34037 -30.63440 -28.52239 -25.45334 -23.65719 -23.13381 -21.56109 -20.05961 -16.53889 -16.32269 -16.14944 -15.27200 -15.25042 -14.79586 -14.47968 -14.09288 -13.63483 -13.11604 -12.57271 -12.42889 -12.21560 -12.03569 -11.87608 -11.47046 -11.28603 -10.92361 -10.82945 -10.66727 -10.38377 -10.36576 -9.92909 -9.65632 -9.39075 -8.83073 -8.61643 -6.66834 -6.19082 -4.22974 2.69231 3.25165 3.32284 3.39045 3.73466 3.91259 4.35962 4.57152 4.63786 4.78061 4.87905 5.05297 5.18130 5.23151 5.29079 5.36985 5.46878 5.55687 5.61455 5.72929 5.77564 5.91311 5.93995 6.05532 6.11027 6.31845 6.41424 7.03942 7.10596 7.12167 7.76036 8.02473 8.79333 9.40102 10.92392 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.071603 B = 0.004196 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.953933 B = 6671.517595 C = 6925.641414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.511 4.511 8 H 0.068 0.932 9 C 0.092 3.908 10 S -0.317 6.317 11 C -0.087 4.087 12 C -0.092 4.092 13 C -0.086 4.086 14 C -0.154 4.154 15 C 0.060 3.940 16 O -0.386 6.386 17 C 0.061 3.939 18 C -0.151 4.151 19 H 0.265 0.735 20 H 0.034 0.966 21 H 0.034 0.966 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 -17.569 -0.149 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.550 4.550 8 H 0.086 0.914 9 C -0.054 4.054 10 S -0.090 6.090 11 C -0.236 4.236 12 C -0.131 4.131 13 C -0.106 4.106 14 C -0.192 4.192 15 C -0.016 4.016 16 O -0.305 6.305 17 C -0.016 4.016 18 C -0.188 4.188 19 H 0.074 0.926 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.172 -17.552 -0.288 17.593 hybrid contribution -1.058 1.215 0.244 1.629 sum 0.114 -16.337 -0.044 16.337 Atomic orbital electron populations 1.69963 1.06160 1.27195 1.49924 1.24973 0.94971 0.99310 0.94694 0.86298 0.80113 0.82543 0.77728 1.19402 1.20722 1.20734 1.20750 0.93523 0.88797 1.51948 0.91420 1.21019 0.93588 0.90912 0.99910 1.86593 1.21756 1.02629 1.98057 1.23245 1.00481 0.96028 1.03829 1.21336 0.97333 0.91318 1.03063 1.21228 0.97255 0.94313 0.97816 1.22316 1.00010 0.98413 0.98423 1.22604 0.91914 0.85342 1.01772 1.87911 1.59678 1.44012 1.38929 1.22571 0.94136 0.98324 0.86569 1.22246 0.98863 0.94752 1.02978 0.92584 0.94748 0.94749 0.90953 0.91239 0.91210 0.91200 0.91043 0.90410 0.90832 0.88972 0.93296 0.89090 0.93336 0.90902 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.66 9.13 -34.44 -0.31 -14.97 16 8 H 0.07 1.95 7.71 -52.48 -0.40 1.54 16 9 C 0.09 2.45 5.70 36.01 0.21 2.66 16 10 S -0.32 -7.03 21.66 -107.50 -2.33 -9.36 16 11 C -0.09 -1.47 5.70 37.16 0.21 -1.26 16 12 C -0.09 -1.25 4.69 -26.73 -0.13 -1.37 16 13 C -0.09 -0.96 2.27 -90.44 -0.21 -1.16 16 14 C -0.15 -1.69 5.10 -26.59 -0.14 -1.82 16 15 C 0.06 0.61 6.84 37.21 0.25 0.86 16 16 O -0.39 -4.43 10.77 -35.23 -0.38 -4.81 16 17 C 0.06 0.56 6.84 37.20 0.25 0.82 16 18 C -0.15 -1.46 5.42 -26.59 -0.14 -1.61 16 19 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 20 H 0.03 0.95 8.14 -51.92 -0.42 0.52 16 21 H 0.03 0.95 8.14 -51.92 -0.42 0.52 16 22 H 0.07 1.19 6.66 -51.92 -0.35 0.84 16 23 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.87 6.75 -51.93 -0.35 0.52 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 289.01 15.07 4.36 4.36 Total: -1.00 -30.04 289.01 -8.46 -38.50 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -5.73 Total: -3.56 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -0.10 Total: -16.13 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.38 Total: -4.81 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -7.03 SS G_CDS: -2.33 Total: -9.36 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.04 -8.46 -38.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591132955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.023 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds