Wall clock time and date at job start Sun Mar 29 2020 22:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48497 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47229 * 300.00494 * 3 2 1 6 6 H 1.48503 * 109.47203 * 60.00034 * 3 2 1 7 7 C 1.37873 * 120.00463 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00285 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99956 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47461 * 179.97438 * 9 7 2 11 11 C 1.81392 * 103.00236 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47500 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47540 * 179.97438 * 12 11 10 14 14 C 1.53175 * 109.53913 * 65.44548 * 13 12 11 15 15 C 1.53092 * 109.16179 * 176.85000 * 14 13 12 16 16 O 1.42910 * 109.41107 * 302.39040 * 15 14 13 17 17 C 1.42900 * 114.09727 * 61.16189 * 16 15 14 18 18 C 1.53090 * 109.41229 * 298.83586 * 17 16 15 19 19 H 0.97003 * 120.00366 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.47385 * 59.99749 * 9 7 2 21 21 H 1.09000 * 109.46762 * 300.00072 * 9 7 2 22 22 H 1.09009 * 109.47060 * 60.00024 * 11 10 9 23 23 H 1.09005 * 109.47341 * 300.00263 * 11 10 9 24 24 H 1.09005 * 109.46474 * 59.99927 * 12 11 10 25 25 H 1.09005 * 109.47030 * 300.00444 * 12 11 10 26 26 H 1.08997 * 109.61228 * 305.22843 * 13 12 11 27 27 H 1.09006 * 109.52647 * 296.75300 * 14 13 12 28 28 H 1.08998 * 109.52537 * 56.94192 * 14 13 12 29 29 H 1.08998 * 109.48147 * 182.40843 * 15 14 13 30 30 H 1.08997 * 109.48550 * 62.37144 * 15 14 13 31 31 H 1.09003 * 109.47953 * 178.86010 * 17 16 15 32 32 H 1.08995 * 109.49265 * 58.82602 * 17 16 15 33 33 H 1.09001 * 109.52724 * 297.70937 * 18 17 16 34 34 H 1.09000 * 109.52338 * 177.51272 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 16 2.4300 -3.8779 -0.0029 11 6 1.3518 -5.3366 -0.0034 12 6 2.2086 -6.6042 -0.0039 13 6 1.2992 -7.8346 -0.0036 14 6 0.5119 -7.8899 -1.3164 15 6 -0.3356 -9.1647 -1.3407 16 8 0.5147 -10.3032 -1.1888 17 6 1.2404 -10.3294 0.0419 18 6 2.1512 -9.1014 0.1217 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5563 -0.8920 21 1 0.6242 -2.5574 0.8880 22 1 0.7223 -5.3229 -0.8933 23 1 0.7229 -5.3239 0.8868 24 1 2.8378 -6.6176 0.8862 25 1 2.8379 -6.6171 -0.8938 26 1 0.6058 -7.7769 0.8353 27 1 -0.1390 -7.0184 -1.3878 28 1 1.2055 -7.8975 -2.1572 29 1 -0.8654 -9.2308 -2.2909 30 1 -1.0564 -9.1377 -0.5236 31 1 1.8460 -11.2346 0.0877 32 1 0.5404 -10.3177 0.8773 33 1 2.8779 -9.1334 -0.6900 34 1 2.6727 -9.0963 1.0789 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591132955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:07 Heat of formation + Delta-G solvation = -100.593310 kcal Electronic energy + Delta-G solvation = -13744.623814 eV Core-core repulsion = 11380.582190 eV Total energy + Delta-G solvation = -2364.041624 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.38253 -36.58061 -35.31379 -32.16785 -31.68405 -30.69402 -26.55203 -25.16056 -24.45923 -22.66293 -20.94975 -18.66039 -17.36375 -17.02204 -16.91643 -16.34056 -16.24532 -15.58399 -15.18418 -14.82227 -14.62699 -14.46672 -14.14370 -13.41816 -13.35587 -13.07680 -12.78581 -12.55673 -12.38516 -12.22634 -11.96848 -11.74265 -11.56330 -11.29379 -11.10403 -10.77104 -10.69804 -10.41355 -8.49871 -8.35416 -6.48926 1.02283 1.39183 1.39397 1.54641 2.03786 2.35605 2.99084 3.00115 3.65049 3.71954 3.89920 4.07056 4.10724 4.25663 4.37199 4.46988 4.56220 4.60507 4.76815 4.82131 4.84568 4.91149 4.91423 4.93136 5.01758 5.13568 5.17093 5.25059 5.44939 5.55257 5.86717 6.28897 6.58781 7.19498 8.76960 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.071603 B = 0.004196 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.953933 B = 6671.517595 C = 6925.641414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.094 3.906 10 S -0.329 6.329 11 C -0.073 4.073 12 C -0.083 4.083 13 C -0.081 4.081 14 C -0.154 4.154 15 C 0.060 3.940 16 O -0.405 6.405 17 C 0.057 3.943 18 C -0.146 4.146 19 H 0.271 0.729 20 H 0.013 0.987 21 H 0.013 0.987 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 -18.291 0.146 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.053 4.053 10 S -0.102 6.102 11 C -0.222 4.222 12 C -0.122 4.122 13 C -0.101 4.101 14 C -0.192 4.192 15 C -0.016 4.016 16 O -0.324 6.324 17 C -0.019 4.019 18 C -0.184 4.184 19 H 0.080 0.920 20 H 0.031 0.969 21 H 0.031 0.969 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.649 -18.281 0.007 18.355 hybrid contribution -1.234 1.331 0.153 1.822 sum 0.415 -16.950 0.161 16.955 Atomic orbital electron populations 1.70061 1.07720 1.28564 1.50142 1.25937 0.95903 1.03133 0.93707 0.85200 0.78724 0.77654 0.78292 1.18940 1.19678 1.19660 1.21053 0.93439 0.90297 1.52848 0.92038 1.20710 0.93979 0.92852 0.97749 1.86427 1.22169 1.03564 1.98051 1.23385 1.00073 0.94381 1.04323 1.21296 0.97261 0.90578 1.03040 1.21187 0.97075 0.93672 0.98150 1.22305 0.99944 0.98892 0.98047 1.22656 0.91751 0.84449 1.02753 1.87893 1.60063 1.44400 1.40052 1.22728 0.94312 0.98689 0.86169 1.22218 0.98637 0.94043 1.03529 0.92028 0.96893 0.96856 0.90526 0.90714 0.90920 0.91550 0.90421 0.90916 0.91587 0.88072 0.92362 0.87492 0.92328 0.91441 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.99 13.29 21.44 0.28 -54.70 16 2 C 0.01 0.79 5.46 84.65 0.46 1.25 16 3 Si 0.98 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.54 -31.41 9.13 25.60 0.23 -31.17 16 8 H 0.06 3.59 7.71 -2.91 -0.02 3.56 16 9 C 0.09 5.16 5.70 71.24 0.41 5.57 16 10 S -0.33 -14.68 21.66 -56.49 -1.22 -15.90 16 11 C -0.07 -2.42 5.70 71.98 0.41 -2.01 16 12 C -0.08 -2.13 4.69 30.59 0.14 -1.99 16 13 C -0.08 -1.63 2.27 -10.68 -0.02 -1.66 16 14 C -0.15 -3.16 5.10 30.68 0.16 -3.00 16 15 C 0.06 1.11 6.84 72.01 0.49 1.60 16 16 O -0.40 -8.47 10.77 -148.98 -1.60 -10.08 16 17 C 0.06 0.92 6.84 72.01 0.49 1.41 16 18 C -0.15 -2.50 5.42 30.68 0.17 -2.33 16 19 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 20 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 21 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.08 2.48 6.66 -2.39 -0.02 2.46 16 23 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.55 6.75 -2.38 -0.02 1.53 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -64.20 289.01 3.47 -60.74 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.04 Total: 6.17 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 2.94 Total: -32.32 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.28 Total: -54.70 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -1.60 Total: -10.08 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -14.68 SS G_CDS: -1.22 Total: -15.90 kcal Total: -64.20 3.47 -60.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591132955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.857 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds