Wall clock time and date at job start Sun Mar 29 2020 22:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99529 * 2 1 4 4 H 1.48498 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47288 * 299.99272 * 3 2 1 6 6 H 1.48498 * 109.47624 * 59.99473 * 3 2 1 7 7 C 1.37877 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00079 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99746 * 0.02562 * 7 2 1 10 10 S 1.81403 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.81394 * 103.00236 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47510 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47362 * 54.99195 * 12 11 10 14 14 C 1.53006 * 109.46623 * 294.99746 * 12 11 10 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.46991 * 60.00378 * 15 14 12 17 17 C 1.52996 * 109.47131 * 299.99311 * 16 15 14 18 18 H 1.09000 * 109.47054 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47379 * 300.00404 * 17 16 15 20 20 C 1.52997 * 109.47317 * 174.99926 * 12 11 10 21 21 H 0.96992 * 120.00356 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.47297 * 59.99581 * 9 7 2 23 23 H 1.09006 * 109.47047 * 299.99321 * 9 7 2 24 24 H 1.09001 * 109.47412 * 59.99417 * 11 10 9 25 25 H 1.09007 * 109.46852 * 299.99589 * 11 10 9 26 26 H 1.08993 * 109.46955 * 300.00075 * 14 12 11 27 27 H 1.09000 * 109.47050 * 59.99904 * 14 12 11 28 28 H 1.09002 * 109.46719 * 180.02562 * 15 14 12 29 29 H 1.08993 * 109.47839 * 299.99931 * 15 14 12 30 30 H 1.09001 * 109.47289 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.47611 * 59.99933 * 16 15 14 32 32 H 0.96708 * 113.99549 * 299.99481 * 19 17 16 33 33 H 1.09002 * 109.47153 * 299.99641 * 20 12 11 34 34 H 1.08996 * 109.46952 * 59.99813 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3519 -5.3366 0.0013 12 6 2.2088 -6.6042 0.0020 13 1 2.9007 -6.5746 0.8438 14 6 2.9994 -6.6860 -1.3054 15 6 3.8567 -7.9532 -1.3044 16 6 2.9523 -9.1807 -1.1777 17 6 2.1617 -9.0989 0.1296 18 1 1.5177 -9.9737 0.2201 19 8 3.0687 -9.0596 1.2332 20 6 1.3039 -7.8314 0.1284 21 1 -0.4850 0.8399 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 0.7223 -5.3237 -0.8884 25 1 0.7231 -5.3232 0.8916 26 1 2.3075 -6.7155 -2.1470 27 1 3.6440 -5.8116 -1.3954 28 1 4.4203 -8.0112 -2.2356 29 1 4.5486 -7.9232 -0.4627 30 1 3.5630 -10.0835 -1.1775 31 1 2.2604 -9.2107 -2.0195 32 1 3.6451 -9.8335 1.2962 33 1 0.7406 -7.7732 1.0598 34 1 0.6121 -7.8610 -0.7133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591132972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:26 Heat of formation + Delta-G solvation = -90.123522 kcal Electronic energy + Delta-G solvation = -14025.174461 eV Core-core repulsion = 11661.586841 eV Total energy + Delta-G solvation = -2363.587620 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.23902 -35.46746 -33.09244 -32.11292 -29.89055 -28.48188 -26.36891 -23.04385 -22.45795 -21.25086 -19.67170 -16.86595 -16.45889 -15.70418 -15.37702 -14.77210 -14.51332 -14.18537 -13.83368 -12.92131 -12.72053 -12.60465 -12.40326 -12.25257 -11.90665 -11.76193 -11.42296 -10.99546 -10.87543 -10.73003 -10.63809 -10.32397 -10.11570 -9.86689 -9.60928 -9.39605 -8.72125 -8.57441 -6.56115 -6.14879 -4.18418 2.78425 3.27902 3.34879 3.41894 3.98651 4.17983 4.39594 4.66943 4.70266 4.86077 5.15194 5.22231 5.25978 5.41200 5.49027 5.54056 5.55243 5.78851 5.81640 5.94922 6.01662 6.04880 6.24796 6.29782 6.35294 6.58399 6.70779 7.16791 7.18532 7.57770 7.80325 8.07711 8.83975 9.44300 10.96689 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.063092 B = 0.004830 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.691562 B = 5795.319801 C = 5945.109129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.089 3.911 10 S -0.308 6.308 11 C -0.085 4.085 12 C -0.061 4.061 13 H 0.085 0.915 14 C -0.115 4.115 15 C -0.114 4.114 16 C -0.152 4.152 17 C 0.107 3.893 18 H 0.050 0.950 19 O -0.560 6.560 20 C -0.105 4.105 21 H 0.264 0.736 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.372 0.628 33 H 0.068 0.932 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.622 -18.301 -1.713 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.548 4.548 8 H 0.086 0.914 9 C -0.058 4.058 10 S -0.081 6.081 11 C -0.233 4.233 12 C -0.081 4.081 13 H 0.103 0.897 14 C -0.153 4.153 15 C -0.152 4.152 16 C -0.189 4.189 17 C 0.048 3.952 18 H 0.068 0.932 19 O -0.365 6.365 20 C -0.144 4.144 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.218 0.782 33 H 0.087 0.913 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.259 -17.560 -1.614 18.142 hybrid contribution -0.865 0.323 -0.168 0.939 sum 3.394 -17.237 -1.782 17.658 Atomic orbital electron populations 1.69969 1.06151 1.27118 1.50071 1.24975 0.94959 0.99282 0.94771 0.86307 0.80125 0.82620 0.77681 1.19411 1.20776 1.20767 1.20752 0.93499 0.88829 1.51735 0.91445 1.21029 0.93796 0.91147 0.99851 1.86521 1.21457 1.02164 1.97964 1.23315 1.00298 0.96097 1.03623 1.20797 0.96615 0.91345 0.99317 0.89684 1.21637 0.98881 0.97951 0.96811 1.21441 0.97958 0.94161 1.01594 1.22256 0.99535 0.98689 0.98457 1.21777 0.90304 0.97635 0.85506 0.93170 1.86591 1.53347 1.47263 1.49293 1.21633 0.97222 0.93180 1.02400 0.92641 0.94822 0.94819 0.91314 0.91206 0.92419 0.90270 0.92385 0.91439 0.92218 0.91218 0.78211 0.91326 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.91 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.77 9.13 -34.44 -0.31 -15.08 16 8 H 0.07 1.96 7.71 -52.49 -0.40 1.56 16 9 C 0.09 2.39 5.70 36.01 0.21 2.59 16 10 S -0.31 -6.95 20.47 -107.50 -2.20 -9.15 16 11 C -0.08 -1.51 5.38 37.16 0.20 -1.31 16 12 C -0.06 -0.91 2.04 -90.62 -0.18 -1.10 16 13 H 0.08 1.42 7.68 -51.93 -0.40 1.03 16 14 C -0.12 -1.60 5.03 -26.73 -0.13 -1.74 16 15 C -0.11 -1.29 5.78 -26.73 -0.15 -1.44 16 16 C -0.15 -1.41 5.64 -26.73 -0.15 -1.56 16 17 C 0.11 1.09 3.77 -26.71 -0.10 0.98 16 18 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 19 O -0.56 -6.14 11.97 -35.23 -0.42 -6.56 16 20 C -0.11 -1.28 4.95 -26.71 -0.13 -1.41 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.03 0.95 8.14 -51.92 -0.42 0.52 16 24 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 25 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.27 7.13 -51.93 -0.37 0.90 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.37 2.46 9.08 45.56 0.41 2.87 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 286.61 15.07 4.32 4.32 Total: -1.00 -30.97 286.61 -8.40 -39.36 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.94 Total: -0.55 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -0.86 Total: -18.33 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.42 Total: -6.56 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -6.95 SS G_CDS: -2.20 Total: -9.15 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.97 -8.40 -39.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591132972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.761 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds