Wall clock time and date at job start Sun Mar 29 2020 22:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99529 * 2 1 4 4 H 1.48498 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47288 * 299.99272 * 3 2 1 6 6 H 1.48498 * 109.47624 * 59.99473 * 3 2 1 7 7 C 1.37877 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00079 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99746 * 0.02562 * 7 2 1 10 10 S 1.81403 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.81394 * 103.00236 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47510 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47362 * 54.99195 * 12 11 10 14 14 C 1.53006 * 109.46623 * 294.99746 * 12 11 10 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.46991 * 60.00378 * 15 14 12 17 17 C 1.52996 * 109.47131 * 299.99311 * 16 15 14 18 18 H 1.09000 * 109.47054 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47379 * 300.00404 * 17 16 15 20 20 C 1.52997 * 109.47317 * 174.99926 * 12 11 10 21 21 H 0.96992 * 120.00356 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.47297 * 59.99581 * 9 7 2 23 23 H 1.09006 * 109.47047 * 299.99321 * 9 7 2 24 24 H 1.09001 * 109.47412 * 59.99417 * 11 10 9 25 25 H 1.09007 * 109.46852 * 299.99589 * 11 10 9 26 26 H 1.08993 * 109.46955 * 300.00075 * 14 12 11 27 27 H 1.09000 * 109.47050 * 59.99904 * 14 12 11 28 28 H 1.09002 * 109.46719 * 180.02562 * 15 14 12 29 29 H 1.08993 * 109.47839 * 299.99931 * 15 14 12 30 30 H 1.09001 * 109.47289 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.47611 * 59.99933 * 16 15 14 32 32 H 0.96708 * 113.99549 * 299.99481 * 19 17 16 33 33 H 1.09002 * 109.47153 * 299.99641 * 20 12 11 34 34 H 1.08996 * 109.46952 * 59.99813 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3519 -5.3366 0.0013 12 6 2.2088 -6.6042 0.0020 13 1 2.9007 -6.5746 0.8438 14 6 2.9994 -6.6860 -1.3054 15 6 3.8567 -7.9532 -1.3044 16 6 2.9523 -9.1807 -1.1777 17 6 2.1617 -9.0989 0.1296 18 1 1.5177 -9.9737 0.2201 19 8 3.0687 -9.0596 1.2332 20 6 1.3039 -7.8314 0.1284 21 1 -0.4850 0.8399 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 0.7223 -5.3237 -0.8884 25 1 0.7231 -5.3232 0.8916 26 1 2.3075 -6.7155 -2.1470 27 1 3.6440 -5.8116 -1.3954 28 1 4.4203 -8.0112 -2.2356 29 1 4.5486 -7.9232 -0.4627 30 1 3.5630 -10.0835 -1.1775 31 1 2.2604 -9.2107 -2.0195 32 1 3.6451 -9.8335 1.2962 33 1 0.7406 -7.7732 1.0598 34 1 0.6121 -7.8610 -0.7133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591132972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:26 Heat of formation + Delta-G solvation = -109.930982 kcal Electronic energy + Delta-G solvation = -14026.033377 eV Core-core repulsion = 11661.586841 eV Total energy + Delta-G solvation = -2364.446536 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.15902 -36.41756 -35.30580 -33.14437 -30.82533 -30.68443 -27.60866 -25.17917 -23.40027 -22.32811 -20.66468 -18.66030 -17.66998 -17.19671 -16.62179 -16.42240 -15.72827 -15.31529 -15.19668 -14.52688 -14.46224 -14.20241 -13.81362 -13.38758 -13.22966 -13.04774 -12.75636 -12.56365 -12.46786 -12.07957 -11.81517 -11.66339 -11.57370 -11.39005 -10.90589 -10.76667 -10.72206 -10.42441 -8.44057 -8.34818 -6.48332 1.04738 1.38971 1.39259 1.54706 2.06350 2.35943 2.99432 3.45608 3.67547 3.75992 3.96285 4.12241 4.31796 4.38584 4.48038 4.49717 4.59622 4.69526 4.77809 4.86699 4.92240 4.92307 5.06526 5.10309 5.26466 5.29044 5.35360 5.46703 5.55765 5.58486 5.87632 6.59426 7.02249 7.19859 8.77771 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.063092 B = 0.004830 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.691562 B = 5795.319801 C = 5945.109129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.090 3.910 10 S -0.316 6.316 11 C -0.073 4.073 12 C -0.053 4.053 13 H 0.064 0.936 14 C -0.115 4.115 15 C -0.111 4.111 16 C -0.146 4.146 17 C 0.108 3.892 18 H 0.075 0.925 19 O -0.583 6.583 20 C -0.106 4.106 21 H 0.271 0.729 22 H 0.013 0.987 23 H 0.010 0.990 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.390 0.610 33 H 0.063 0.937 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 -19.651 -2.191 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.079 0.921 9 C -0.057 4.057 10 S -0.088 6.088 11 C -0.222 4.222 12 C -0.073 4.073 13 H 0.082 0.918 14 C -0.153 4.153 15 C -0.148 4.148 16 C -0.183 4.183 17 C 0.049 3.951 18 H 0.093 0.907 19 O -0.391 6.391 20 C -0.145 4.145 21 H 0.080 0.920 22 H 0.031 0.969 23 H 0.028 0.972 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.239 0.761 33 H 0.082 0.918 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.807 -18.931 -2.090 19.643 hybrid contribution -1.053 0.649 -0.004 1.237 sum 3.754 -18.281 -2.094 18.780 Atomic orbital electron populations 1.70069 1.07751 1.28543 1.50213 1.25955 0.95908 1.03168 0.93711 0.85187 0.78699 0.77596 0.78305 1.18950 1.19580 1.19683 1.21042 0.93400 0.90277 1.52767 0.92070 1.20730 0.94207 0.93168 0.97591 1.86396 1.21640 1.02855 1.97952 1.23478 0.99968 0.94774 1.03946 1.20733 0.96416 0.91017 0.99117 0.91770 1.21609 0.98838 0.98460 0.96352 1.21402 0.97847 0.93769 1.01789 1.22232 0.99471 0.98373 0.98233 1.21800 0.90456 0.97065 0.85760 0.90684 1.86549 1.54015 1.48881 1.49696 1.21664 0.97250 0.92705 1.02845 0.92045 0.96916 0.97182 0.90560 0.91245 0.91751 0.93109 0.91290 0.92403 0.89757 0.90249 0.76051 0.91831 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 2 C 0.01 0.76 5.46 84.65 0.46 1.22 16 3 Si 0.98 44.80 29.54 68.60 2.03 46.82 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -31.94 9.13 25.60 0.23 -31.70 16 8 H 0.06 3.64 7.71 -2.91 -0.02 3.61 16 9 C 0.09 5.08 5.70 71.24 0.41 5.48 16 10 S -0.32 -14.64 20.47 -56.49 -1.16 -15.80 16 11 C -0.07 -2.62 5.38 71.98 0.39 -2.24 16 12 C -0.05 -1.55 2.04 -10.79 -0.02 -1.57 16 13 H 0.06 2.15 7.68 -2.39 -0.02 2.13 16 14 C -0.11 -3.10 5.03 30.60 0.15 -2.94 16 15 C -0.11 -2.28 5.78 30.59 0.18 -2.10 16 16 C -0.15 -2.19 5.64 30.59 0.17 -2.02 16 17 C 0.11 1.86 3.77 30.61 0.12 1.98 16 18 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 19 O -0.58 -11.47 11.97 -148.98 -1.78 -13.25 16 20 C -0.11 -2.34 4.95 30.61 0.15 -2.19 16 21 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 22 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.64 7.13 -2.39 -0.02 1.62 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.30 7.68 -2.39 -0.02 1.29 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.39 4.11 9.08 -74.05 -0.67 3.44 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -67.74 286.61 2.00 -65.74 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.39 Total: 8.23 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 2.24 Total: -36.08 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.28 Total: -55.66 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.78 Total: -13.25 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: -14.64 SS G_CDS: -1.16 Total: -15.80 kcal Total: -67.74 2.00 -65.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591132972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.187 kcal (2) G-P(sol) polarization free energy of solvation -67.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds