Wall clock time and date at job start Sun Mar 29 2020 22:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99590 * 2 1 4 4 H 1.48506 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47583 * 299.99883 * 3 2 1 6 6 H 1.48505 * 109.47365 * 60.00340 * 3 2 1 7 7 C 1.37878 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99228 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99926 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.46806 * 179.97438 * 9 7 2 11 11 C 1.81404 * 103.00132 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47257 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47153 * 304.99667 * 12 11 10 14 14 C 1.53000 * 109.47060 * 64.99986 * 12 11 10 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46963 * 299.99499 * 15 14 12 17 17 C 1.52997 * 109.47092 * 60.00194 * 16 15 14 18 18 H 1.09002 * 109.47497 * 59.99850 * 17 16 15 19 19 O 1.42896 * 109.47412 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.46817 * 184.99898 * 12 11 10 21 21 H 0.96996 * 119.99794 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47564 * 59.99841 * 9 7 2 23 23 H 1.09002 * 109.47313 * 299.99566 * 9 7 2 24 24 H 1.09001 * 109.46988 * 59.99450 * 11 10 9 25 25 H 1.09004 * 109.46649 * 300.00141 * 11 10 9 26 26 H 1.09001 * 109.47194 * 299.99650 * 14 12 11 27 27 H 1.08992 * 109.47399 * 59.99823 * 14 12 11 28 28 H 1.09000 * 109.47437 * 180.02562 * 15 14 12 29 29 H 1.09002 * 109.47508 * 59.99571 * 15 14 12 30 30 H 1.09002 * 109.47067 * 300.00341 * 16 15 14 31 31 H 1.09000 * 109.47312 * 180.02562 * 16 15 14 32 32 H 0.96703 * 114.00193 * 300.00283 * 19 17 16 33 33 H 1.09002 * 109.47075 * 299.99262 * 20 12 11 34 34 H 1.08996 * 109.47407 * 60.00219 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 16 2.4299 -3.8778 -0.0029 11 6 1.3517 -5.3367 -0.0050 12 6 2.2086 -6.6042 -0.0056 13 1 2.9010 -6.5743 -0.8469 14 6 2.9984 -6.6865 1.3022 15 6 3.8557 -7.9537 1.3014 16 6 2.9513 -9.1812 1.1737 17 6 2.1615 -9.0989 -0.1341 18 1 2.8538 -9.0686 -0.9755 19 8 1.3164 -10.2450 -0.2531 20 6 1.3037 -7.8314 -0.1331 21 1 -0.4849 0.8400 0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8880 24 1 0.7228 -5.3223 -0.8952 25 1 0.7223 -5.3244 0.8848 26 1 3.6430 -5.8122 1.3930 27 1 2.3060 -6.7163 2.1435 28 1 4.4181 -8.0126 2.2332 29 1 4.5481 -7.9234 0.4600 30 1 2.2590 -9.2114 2.0150 31 1 3.5620 -10.0840 1.1735 32 1 1.7932 -11.0863 -0.2602 33 1 0.6114 -7.8613 0.7083 34 1 0.7411 -7.7728 -1.0647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591132974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:30 Heat of formation + Delta-G solvation = -92.557094 kcal Electronic energy + Delta-G solvation = -13892.117286 eV Core-core repulsion = 11528.424138 eV Total energy + Delta-G solvation = -2363.693148 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.15207 -35.95766 -33.12129 -32.23935 -29.65109 -28.51701 -26.40838 -23.08229 -22.38237 -21.39686 -19.81448 -17.23050 -16.47262 -15.55689 -15.30574 -14.69058 -14.61789 -14.37135 -13.87191 -13.31800 -12.79449 -12.67973 -12.43683 -12.22081 -11.87634 -11.76901 -11.41733 -11.05809 -10.88833 -10.70738 -10.57380 -10.49945 -10.27544 -9.86687 -9.80917 -9.46753 -8.78978 -8.60036 -6.62592 -6.17480 -4.21356 2.69666 3.26055 3.33171 3.39644 3.92312 4.06596 4.37236 4.60656 4.63890 4.97335 5.07261 5.16386 5.19681 5.34136 5.39852 5.45585 5.49829 5.72915 5.78610 5.92401 5.98291 6.05772 6.13116 6.18807 6.26049 6.48322 6.54074 7.13205 7.15128 7.49280 7.77432 8.04273 8.80942 9.41589 10.94010 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.066363 B = 0.004651 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.819352 B = 6019.204809 C = 6297.913704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.090 3.910 10 S -0.308 6.308 11 C -0.084 4.084 12 C -0.063 4.063 13 H 0.077 0.923 14 C -0.118 4.118 15 C -0.116 4.116 16 C -0.150 4.150 17 C 0.105 3.895 18 H 0.054 0.946 19 O -0.570 6.570 20 C -0.104 4.104 21 H 0.264 0.736 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.374 0.626 33 H 0.070 0.930 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 -17.317 1.179 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.550 4.550 8 H 0.086 0.914 9 C -0.057 4.057 10 S -0.081 6.081 11 C -0.232 4.232 12 C -0.082 4.082 13 H 0.096 0.904 14 C -0.156 4.156 15 C -0.154 4.154 16 C -0.188 4.188 17 C 0.047 3.953 18 H 0.072 0.928 19 O -0.375 6.375 20 C -0.143 4.143 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.221 0.779 33 H 0.088 0.912 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.226 -16.687 1.169 17.525 hybrid contribution -0.615 0.469 0.023 0.774 sum 4.611 -16.218 1.193 16.903 Atomic orbital electron populations 1.69970 1.06154 1.27168 1.49921 1.24978 0.94963 0.99296 0.94730 0.86305 0.80094 0.82598 0.77712 1.19420 1.20755 1.20750 1.20740 0.93489 0.88802 1.51923 0.91437 1.21037 0.93720 0.91015 0.99946 1.86488 1.21461 1.02194 1.97986 1.23264 1.00252 0.95668 1.04035 1.20828 0.96476 0.91787 0.99133 0.90413 1.21687 0.98994 0.97963 0.96963 1.21488 0.97754 0.94191 1.01947 1.22275 0.99050 0.98566 0.98925 1.21837 0.91477 0.86036 0.95970 0.92753 1.86527 1.37787 1.16399 1.96820 1.21554 0.97999 0.91711 1.03083 0.92599 0.94767 0.94730 0.90970 0.90999 0.89951 0.91923 0.91736 0.91906 0.91220 0.92178 0.77923 0.91176 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.58 9.13 -34.44 -0.31 -14.90 16 8 H 0.07 1.93 7.71 -52.49 -0.40 1.53 16 9 C 0.09 2.37 5.70 36.00 0.21 2.58 16 10 S -0.31 -6.70 20.47 -107.50 -2.20 -8.90 16 11 C -0.08 -1.43 5.38 37.16 0.20 -1.23 16 12 C -0.06 -0.87 2.19 -90.62 -0.20 -1.07 16 13 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 14 C -0.12 -1.55 5.03 -26.73 -0.13 -1.68 16 15 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 16 C -0.15 -1.44 5.54 -26.73 -0.15 -1.58 16 17 C 0.11 1.12 3.47 -26.71 -0.09 1.03 16 18 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 19 O -0.57 -6.06 13.32 -35.23 -0.47 -6.53 16 20 C -0.10 -1.30 4.86 -26.70 -0.13 -1.43 16 21 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 23 H 0.03 0.95 8.14 -51.92 -0.42 0.53 16 24 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 25 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 26 H 0.08 1.23 7.13 -51.93 -0.37 0.86 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.37 2.28 9.08 45.56 0.41 2.70 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -30.37 288.69 -8.46 -38.83 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -4.99 Total: -0.74 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -0.87 Total: -17.94 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.74 Total: -25.59 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.47 Total: -6.53 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -6.70 SS G_CDS: -2.20 Total: -8.90 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.37 -8.46 -38.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591132974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.727 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds