Wall clock time and date at job start Sun Mar 29 2020 22:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99590 * 2 1 4 4 H 1.48506 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47583 * 299.99883 * 3 2 1 6 6 H 1.48505 * 109.47365 * 60.00340 * 3 2 1 7 7 C 1.37878 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99228 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99926 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.46806 * 179.97438 * 9 7 2 11 11 C 1.81404 * 103.00132 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47257 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47153 * 304.99667 * 12 11 10 14 14 C 1.53000 * 109.47060 * 64.99986 * 12 11 10 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46963 * 299.99499 * 15 14 12 17 17 C 1.52997 * 109.47092 * 60.00194 * 16 15 14 18 18 H 1.09002 * 109.47497 * 59.99850 * 17 16 15 19 19 O 1.42896 * 109.47412 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.46817 * 184.99898 * 12 11 10 21 21 H 0.96996 * 119.99794 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47564 * 59.99841 * 9 7 2 23 23 H 1.09002 * 109.47313 * 299.99566 * 9 7 2 24 24 H 1.09001 * 109.46988 * 59.99450 * 11 10 9 25 25 H 1.09004 * 109.46649 * 300.00141 * 11 10 9 26 26 H 1.09001 * 109.47194 * 299.99650 * 14 12 11 27 27 H 1.08992 * 109.47399 * 59.99823 * 14 12 11 28 28 H 1.09000 * 109.47437 * 180.02562 * 15 14 12 29 29 H 1.09002 * 109.47508 * 59.99571 * 15 14 12 30 30 H 1.09002 * 109.47067 * 300.00341 * 16 15 14 31 31 H 1.09000 * 109.47312 * 180.02562 * 16 15 14 32 32 H 0.96703 * 114.00193 * 300.00283 * 19 17 16 33 33 H 1.09002 * 109.47075 * 299.99262 * 20 12 11 34 34 H 1.08996 * 109.47407 * 60.00219 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 16 2.4299 -3.8778 -0.0029 11 6 1.3517 -5.3367 -0.0050 12 6 2.2086 -6.6042 -0.0056 13 1 2.9010 -6.5743 -0.8469 14 6 2.9984 -6.6865 1.3022 15 6 3.8557 -7.9537 1.3014 16 6 2.9513 -9.1812 1.1737 17 6 2.1615 -9.0989 -0.1341 18 1 2.8538 -9.0686 -0.9755 19 8 1.3164 -10.2450 -0.2531 20 6 1.3037 -7.8314 -0.1331 21 1 -0.4849 0.8400 0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8880 24 1 0.7228 -5.3223 -0.8952 25 1 0.7223 -5.3244 0.8848 26 1 3.6430 -5.8122 1.3930 27 1 2.3060 -6.7163 2.1435 28 1 4.4181 -8.0126 2.2332 29 1 4.5481 -7.9234 0.4600 30 1 2.2590 -9.2114 2.0150 31 1 3.5620 -10.0840 1.1735 32 1 1.7932 -11.0863 -0.2602 33 1 0.6114 -7.8613 0.7083 34 1 0.7411 -7.7728 -1.0647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591132974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:29 Heat of formation + Delta-G solvation = -111.765064 kcal Electronic energy + Delta-G solvation = -13892.950206 eV Core-core repulsion = 11528.424138 eV Total energy + Delta-G solvation = -2364.526068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.07954 -36.86075 -35.30070 -33.25768 -30.70127 -30.58271 -27.62230 -25.17939 -23.30666 -22.43960 -20.80081 -18.66857 -18.03020 -17.17510 -16.44181 -16.38060 -15.73359 -15.42553 -15.09356 -14.55387 -14.50952 -14.45687 -13.75073 -13.66771 -13.28907 -12.97812 -12.75196 -12.51482 -12.47914 -12.01240 -11.85128 -11.64881 -11.54120 -11.45388 -11.09777 -10.76391 -10.73198 -10.57073 -8.43489 -8.34438 -6.47972 1.02168 1.39689 1.39809 1.55047 2.04200 2.36218 3.00104 3.24702 3.63396 3.70962 4.02780 4.11039 4.23345 4.28603 4.41352 4.48964 4.56746 4.63589 4.71257 4.78141 4.92488 4.93278 5.05106 5.13906 5.19595 5.21414 5.30242 5.41277 5.51723 5.56187 5.87749 6.60151 6.93691 7.20417 8.78111 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.066363 B = 0.004651 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.819352 B = 6019.204809 C = 6297.913704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.088 3.912 10 S -0.305 6.305 11 C -0.075 4.075 12 C -0.054 4.054 13 H 0.078 0.922 14 C -0.118 4.118 15 C -0.111 4.111 16 C -0.144 4.144 17 C 0.109 3.891 18 H 0.064 0.936 19 O -0.586 6.586 20 C -0.102 4.102 21 H 0.270 0.730 22 H 0.011 0.989 23 H 0.011 0.989 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.395 0.605 33 H 0.064 0.936 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.005 -18.438 1.245 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.081 0.919 9 C -0.059 4.059 10 S -0.077 6.077 11 C -0.223 4.223 12 C -0.073 4.073 13 H 0.097 0.903 14 C -0.156 4.156 15 C -0.149 4.149 16 C -0.181 4.181 17 C 0.050 3.950 18 H 0.082 0.918 19 O -0.394 6.394 20 C -0.141 4.141 21 H 0.079 0.921 22 H 0.029 0.971 23 H 0.030 0.970 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.245 0.755 33 H 0.083 0.917 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.490 -17.832 1.235 19.016 hybrid contribution -1.054 0.701 -0.001 1.266 sum 5.437 -17.131 1.235 18.015 Atomic orbital electron populations 1.70077 1.07792 1.28521 1.50245 1.25960 0.95886 1.03202 0.93750 0.85192 0.78773 0.77620 0.78230 1.18792 1.19754 1.19732 1.21046 0.93462 0.90207 1.52695 0.91872 1.20747 0.94291 0.93272 0.97626 1.86272 1.21119 1.02400 1.97949 1.23413 1.00031 0.94732 1.04116 1.20766 0.96244 0.90587 0.99738 0.90336 1.21660 0.98891 0.98809 0.96245 1.21453 0.97545 0.92987 1.02892 1.22222 0.98872 0.99090 0.97959 1.21738 0.91031 0.85206 0.97003 0.91799 1.86473 1.38656 1.17455 1.96860 1.21485 0.97869 0.92153 1.02629 0.92085 0.97101 0.97045 0.90874 0.90979 0.92070 0.92217 0.90575 0.91280 0.91832 0.89580 0.75520 0.91733 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 2 C 0.01 0.71 5.46 84.65 0.46 1.18 16 3 Si 0.98 44.21 29.54 68.60 2.03 46.23 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -31.29 9.13 25.60 0.23 -31.06 16 8 H 0.06 3.66 7.71 -2.91 -0.02 3.64 16 9 C 0.09 4.84 5.70 71.23 0.41 5.25 16 10 S -0.30 -13.46 20.47 -56.49 -1.16 -14.62 16 11 C -0.07 -2.55 5.38 71.98 0.39 -2.17 16 12 C -0.05 -1.43 2.19 -10.79 -0.02 -1.46 16 13 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 14 C -0.12 -2.96 5.03 30.59 0.15 -2.81 16 15 C -0.11 -2.04 5.92 30.60 0.18 -1.86 16 16 C -0.14 -2.30 5.54 30.59 0.17 -2.13 16 17 C 0.11 2.03 3.47 30.61 0.11 2.14 16 18 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 19 O -0.59 -10.88 13.32 -148.98 -1.98 -12.86 16 20 C -0.10 -2.39 4.86 30.61 0.15 -2.24 16 21 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 22 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.01 0.65 8.14 -2.39 -0.02 0.64 16 24 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.06 1.79 7.13 -2.39 -0.02 1.77 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.39 3.55 9.08 -74.05 -0.67 2.88 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -65.61 288.69 1.78 -63.83 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.39 Total: 7.87 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 2.23 Total: -35.16 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.28 Total: -55.29 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -1.98 Total: -12.86 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -13.46 SS G_CDS: -1.16 Total: -14.62 kcal Total: -65.61 1.78 -63.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591132974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.934 kcal (2) G-P(sol) polarization free energy of solvation -65.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds