Wall clock time and date at job start Sun Mar 29 2020 22:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47319 * 180.02562 * 9 7 2 11 11 C 1.81397 * 102.99868 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46969 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.47257 * 54.99706 * 12 11 10 14 14 C 1.53003 * 109.47106 * 294.99619 * 12 11 10 15 15 C 1.53007 * 109.47170 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.46789 * 60.00349 * 15 14 12 17 17 C 1.52994 * 109.47062 * 299.99952 * 16 15 14 18 18 H 1.09002 * 109.47278 * 300.00059 * 17 16 15 19 19 O 1.42898 * 109.47276 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47555 * 60.00025 * 17 16 15 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09001 * 109.47276 * 299.99683 * 11 10 9 25 25 H 1.09001 * 109.47181 * 60.00072 * 11 10 9 26 26 H 1.08995 * 109.47134 * 300.00162 * 14 12 11 27 27 H 1.09006 * 109.47195 * 60.00490 * 14 12 11 28 28 H 1.09002 * 109.47202 * 300.00504 * 15 14 12 29 29 H 1.08995 * 109.47197 * 180.02562 * 15 14 12 30 30 H 1.08998 * 109.46781 * 179.97438 * 16 15 14 31 31 H 1.09002 * 109.47122 * 60.00106 * 16 15 14 32 32 H 0.96706 * 114.00024 * 59.99395 * 19 17 16 33 33 H 1.08995 * 109.47473 * 179.97438 * 20 17 16 34 34 H 1.09002 * 109.46801 * 59.99741 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0021 11 6 1.3516 -5.3366 0.0011 12 6 2.2085 -6.6041 0.0016 13 1 2.8997 -6.5751 0.8439 14 6 3.0001 -6.6851 -1.3052 15 6 3.8575 -7.9524 -1.3045 16 6 2.9529 -9.1801 -1.1792 17 6 2.1613 -9.0991 0.1275 18 1 2.8525 -9.0696 0.9698 19 8 1.3169 -10.2459 0.2448 20 6 1.3040 -7.8318 0.1268 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 0.7215 -5.3233 0.8904 25 1 0.7235 -5.3235 -0.8896 26 1 2.3089 -6.7142 -2.1475 27 1 3.6449 -5.8108 -1.3943 28 1 4.5487 -7.9230 -0.4621 29 1 4.4218 -8.0099 -2.2352 30 1 3.5637 -10.0828 -1.1792 31 1 2.2617 -9.2095 -2.0216 32 1 1.7943 -11.0868 0.2520 33 1 0.7397 -7.7744 1.0576 34 1 0.6128 -7.8613 -0.7155 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591132975.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:31 Heat of formation + Delta-G solvation = -96.027336 kcal Electronic energy + Delta-G solvation = -13921.890171 eV Core-core repulsion = 11558.046542 eV Total energy + Delta-G solvation = -2363.843629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.20716 -36.00829 -33.47937 -32.30243 -29.70819 -28.06585 -26.45308 -23.06579 -22.43799 -21.47477 -19.87784 -17.32250 -16.95268 -15.57190 -15.31353 -14.68034 -14.52433 -14.20822 -13.78140 -13.59901 -13.09199 -12.88541 -12.55406 -12.36993 -11.88254 -11.58004 -11.54119 -11.11829 -10.77736 -10.73281 -10.58848 -10.42284 -10.23817 -10.05346 -9.89076 -9.08903 -8.77426 -8.53420 -6.74576 -6.52193 -4.23720 2.57384 3.40868 3.42716 3.61043 3.76829 4.01593 4.46199 4.55295 4.58742 4.92429 5.00704 5.11101 5.25839 5.27217 5.33964 5.40109 5.44732 5.65174 5.71954 5.86972 5.91170 5.99683 6.06983 6.11728 6.19530 6.41451 6.47255 6.78324 6.83033 7.45351 7.83029 8.27842 8.66214 9.46003 10.87862 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.066231 B = 0.004671 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.662652 B = 5993.351383 C = 6273.205800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.591 4.591 8 H 0.061 0.939 9 C 0.072 3.928 10 S -0.287 6.287 11 C -0.089 4.089 12 C -0.062 4.062 13 H 0.078 0.922 14 C -0.119 4.119 15 C -0.116 4.116 16 C -0.150 4.150 17 C 0.106 3.894 18 H 0.055 0.945 19 O -0.570 6.570 20 C -0.104 4.104 21 H 0.268 0.732 22 H 0.024 0.976 23 H 0.025 0.975 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.375 0.625 33 H 0.069 0.931 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 -17.741 -1.195 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.181 4.181 3 Si 0.904 3.096 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.630 4.630 8 H 0.079 0.921 9 C -0.075 4.075 10 S -0.059 6.059 11 C -0.237 4.237 12 C -0.082 4.082 13 H 0.096 0.904 14 C -0.156 4.156 15 C -0.154 4.154 16 C -0.188 4.188 17 C 0.047 3.953 18 H 0.073 0.927 19 O -0.375 6.375 20 C -0.143 4.143 21 H 0.078 0.922 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.221 0.779 33 H 0.087 0.913 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.691 -15.586 -1.184 16.635 hybrid contribution -0.789 -2.193 -0.025 2.330 sum 4.902 -17.779 -1.209 18.482 Atomic orbital electron populations 1.70807 1.06856 1.30537 1.45932 1.25967 0.96375 1.02572 0.93234 0.83429 0.74804 0.74566 0.76837 1.20567 1.21127 1.21134 1.21557 0.94738 0.89823 1.56856 0.92095 1.21097 0.94653 0.93144 0.98634 1.86499 1.20370 1.01153 1.97914 1.23318 1.00437 0.95965 1.03990 1.20817 0.96464 0.91699 0.99209 0.90371 1.21692 0.98987 0.98031 0.96921 1.21486 0.97741 0.94129 1.02018 1.22275 0.99044 0.98583 0.98918 1.21816 0.91460 0.86010 0.96010 0.92737 1.86525 1.37774 1.16394 1.96837 1.21539 0.97992 0.91720 1.03086 0.92206 0.95735 0.95705 0.90994 0.91019 0.91910 0.90004 0.91877 0.91668 0.92104 0.91207 0.77866 0.91253 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.47 13.65 55.43 0.76 -26.71 16 2 C 0.02 0.70 5.46 -17.82 -0.10 0.60 16 3 Si 1.08 25.19 29.90 -169.99 -5.08 20.11 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.59 -17.11 9.13 -34.44 -0.31 -17.42 16 8 H 0.06 1.78 7.71 -52.48 -0.40 1.37 16 9 C 0.07 1.90 5.01 36.01 0.18 2.08 16 10 S -0.29 -6.26 20.47 -107.50 -2.20 -8.46 16 11 C -0.09 -1.51 5.38 37.16 0.20 -1.31 16 12 C -0.06 -0.86 2.19 -90.62 -0.20 -1.06 16 13 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 14 C -0.12 -1.54 5.03 -26.73 -0.13 -1.68 16 15 C -0.12 -1.20 5.92 -26.72 -0.16 -1.36 16 16 C -0.15 -1.42 5.54 -26.73 -0.15 -1.57 16 17 C 0.11 1.11 3.47 -26.74 -0.09 1.02 16 18 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 19 O -0.57 -6.00 13.32 -35.23 -0.47 -6.47 16 20 C -0.10 -1.29 4.86 -26.73 -0.13 -1.41 16 21 H 0.27 8.06 7.22 -40.82 -0.29 7.77 16 22 H 0.02 0.67 8.01 -51.92 -0.42 0.25 16 23 H 0.02 0.67 8.01 -51.92 -0.42 0.26 16 24 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 25 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.22 7.14 -51.93 -0.37 0.85 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.37 2.24 9.08 45.56 0.41 2.66 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 287.38 15.07 4.33 4.33 Total: -1.00 -31.29 287.38 -8.49 -39.78 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.93 Total: -0.47 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -0.89 Total: -22.11 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.76 Total: -26.71 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.47 Total: -6.47 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.11 kcal Atomic # 16 Polarization: -6.26 SS G_CDS: -2.20 Total: -8.46 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.29 -8.49 -39.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591132975.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.250 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds