Wall clock time and date at job start Sun Mar 29 2020 22:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47000 * 2 1 4 4 O 1.42898 * 109.47588 * 120.00089 * 2 1 3 5 5 C 1.42900 * 113.99806 * 89.99832 * 4 2 1 6 6 C 1.53783 * 113.61766 * 210.00276 * 5 4 2 7 7 C 1.53781 * 87.08281 * 220.01947 * 6 5 4 8 8 S 1.81397 * 113.61324 * 139.97835 * 7 6 5 9 9 C 1.81397 * 102.99868 * 174.99891 * 8 7 6 10 10 C 1.50706 * 109.47319 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99302 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00436 * 179.72715 * 10 9 8 13 13 N 1.31514 * 120.00481 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99745 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47209 * 90.00365 * 14 12 10 16 16 H 1.48506 * 109.47294 * 210.00213 * 14 12 10 17 17 H 1.48501 * 109.47275 * 330.00116 * 14 12 10 18 18 C 1.53775 * 113.61573 * 112.50492 * 5 4 2 19 19 H 1.08996 * 109.47818 * 59.99744 * 1 2 3 20 20 H 1.09001 * 109.47498 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47166 * 299.99874 * 1 2 3 22 22 H 1.09004 * 109.46763 * 240.00466 * 2 1 3 23 23 H 1.09003 * 109.47036 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47277 * 300.00034 * 3 2 1 25 25 H 1.08994 * 109.46969 * 60.00712 * 3 2 1 26 26 H 1.09003 * 112.84985 * 341.20174 * 5 4 2 27 27 H 1.08999 * 113.61595 * 105.46622 * 6 5 4 28 28 H 1.09002 * 113.60959 * 334.57005 * 6 5 4 29 29 H 1.08996 * 113.61100 * 270.79966 * 7 6 5 30 30 H 1.09001 * 109.47514 * 60.00346 * 9 8 7 31 31 H 1.08998 * 109.47640 * 300.00326 * 9 8 7 32 32 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 33 33 H 1.09000 * 113.61367 * 25.43153 * 18 5 4 34 34 H 1.09006 * 113.61909 * 254.53171 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9885 6 6 1.9910 -2.8969 2.2734 7 6 3.2024 -3.7393 1.8400 8 16 4.3030 -4.1880 3.2103 9 6 5.5159 -5.2801 2.4186 10 6 6.5169 -5.7463 3.4442 11 1 6.4316 -5.4187 4.4698 12 6 7.5379 -6.5959 3.0746 13 7 8.4112 -7.0031 3.9697 14 14 7.6801 -7.1697 1.3026 15 1 8.5297 -6.2191 0.5411 16 1 8.2954 -8.5208 1.2676 17 1 6.3283 -7.2253 0.6903 18 6 3.6751 -2.5090 1.0477 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8932 -0.5138 -0.8901 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6627 -2.4736 0.1265 27 1 1.0544 -3.4542 2.2885 28 1 2.1601 -2.3266 3.1868 29 1 2.9399 -4.5904 1.2117 30 1 6.0323 -4.7366 1.6274 31 1 5.0043 -6.1430 1.9924 32 1 9.1293 -7.6011 3.7097 33 1 4.3046 -1.8327 1.6260 34 1 4.0982 -2.7533 0.0733 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591133007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:21 Heat of formation + Delta-G solvation = -42.136947 kcal Electronic energy + Delta-G solvation = -13792.429737 eV Core-core repulsion = 11430.922971 eV Total energy + Delta-G solvation = -2361.506766 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.35114 -36.65071 -33.02194 -32.28442 -29.32971 -27.45748 -25.61985 -24.85398 -22.45013 -21.45114 -19.66374 -17.46341 -16.83797 -15.73052 -15.31930 -15.00307 -14.58947 -14.07228 -13.71718 -13.06460 -12.89597 -12.70101 -12.48273 -12.40528 -12.29452 -12.11643 -11.68787 -11.34584 -11.27435 -10.85256 -10.76023 -10.68097 -10.27710 -9.81469 -9.58599 -9.40986 -8.89682 -8.70481 -6.76628 -6.16816 -4.18601 2.54839 3.21331 3.28637 3.29591 3.62946 3.74483 4.31696 4.56810 4.68174 4.76432 4.81780 4.90732 4.97752 5.01820 5.14548 5.32875 5.37313 5.56382 5.57684 5.63828 5.81261 5.90100 5.95349 6.00600 6.07565 6.18472 6.38030 6.61657 6.72242 7.29827 7.44791 8.31964 8.86311 9.39180 10.95440 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.050424 B = 0.004893 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.153339 B = 5720.929723 C = 5901.939556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.365 6.365 5 C 0.065 3.935 6 C -0.104 4.104 7 C -0.095 4.095 8 S -0.252 6.252 9 C 0.046 3.954 10 C -0.514 4.514 11 H 0.083 0.917 12 C 0.079 3.921 13 N -0.892 5.892 14 Si 0.878 3.122 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.267 1.267 18 C -0.141 4.141 19 H 0.062 0.938 20 H 0.055 0.945 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.267 0.733 33 H 0.102 0.898 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.517 12.039 -10.645 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.020 3.980 3 C -0.207 4.207 4 O -0.284 6.284 5 C 0.005 3.995 6 C -0.143 4.143 7 C -0.224 4.224 8 S -0.022 6.022 9 C -0.102 4.102 10 C -0.552 4.552 11 H 0.101 0.899 12 C -0.125 4.125 13 N -0.530 5.530 14 Si 0.705 3.295 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.181 4.181 19 H 0.081 0.919 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.365 12.308 -9.356 21.104 hybrid contribution 0.247 -1.031 -2.447 2.667 sum -14.118 11.277 -11.802 21.582 Atomic orbital electron populations 1.22326 0.96245 1.02270 1.02380 1.22113 0.93401 0.93944 0.88547 1.21860 1.01994 0.94598 1.02263 1.88019 1.85748 1.19720 1.34914 1.23735 0.96526 0.80960 0.98243 1.23011 0.96700 0.96131 0.98447 1.24269 0.99129 0.98872 1.00116 1.86691 1.32956 1.64313 1.18247 1.21392 0.95215 0.94969 0.98634 1.20512 1.09267 1.29170 0.96284 0.89863 1.24862 0.94951 0.95258 0.97449 1.69868 1.15373 1.33882 1.33866 0.86802 0.78779 0.78596 0.85316 1.19902 1.20817 1.19163 1.23825 0.96840 0.96825 1.00609 0.91938 0.92548 0.91784 0.92364 0.91871 0.91550 0.91814 0.89760 0.90682 0.88361 0.88509 0.95206 0.94907 0.92257 0.87995 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.53 37.15 0.35 -1.11 16 2 C 0.08 0.77 3.21 -26.73 -0.09 0.68 16 3 C -0.15 -1.30 9.56 37.16 0.36 -0.94 16 4 O -0.36 -4.72 10.00 -35.23 -0.35 -5.08 16 5 C 0.06 0.81 4.13 -25.92 -0.11 0.71 16 6 C -0.10 -1.44 7.50 -25.92 -0.19 -1.63 16 7 C -0.09 -1.54 4.28 -25.92 -0.11 -1.65 16 8 S -0.25 -5.43 21.45 -107.50 -2.31 -7.74 16 9 C 0.05 1.13 4.77 36.01 0.17 1.30 16 10 C -0.51 -14.93 9.68 -34.44 -0.33 -15.27 16 11 H 0.08 2.66 7.96 -52.49 -0.42 2.24 16 12 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 13 N -0.89 -27.28 13.96 55.43 0.77 -26.51 16 14 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.17 6.53 56.52 0.37 -5.81 16 18 C -0.14 -2.07 7.50 -25.92 -0.19 -2.26 16 19 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 20 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.54 7.73 -51.93 -0.40 0.13 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.90 7.77 -51.93 -0.40 0.49 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.47 8.10 -51.93 -0.42 1.05 16 29 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 30 H 0.03 0.72 7.58 -51.92 -0.39 0.32 16 31 H 0.03 0.80 7.18 -51.92 -0.37 0.42 16 32 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 33 H 0.10 1.65 8.10 -51.93 -0.42 1.23 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 295.26 15.07 4.45 4.45 Total: -1.00 -30.67 295.26 -8.15 -38.82 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -5.80 Total: -2.52 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -0.24 Total: -17.98 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.77 Total: -26.51 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.35 Total: -5.08 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 16 Polarization: -5.43 SS G_CDS: -2.31 Total: -7.74 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.67 -8.15 -38.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591133007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.318 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds