Wall clock time and date at job start Sun Mar 29 2020 22:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47000 * 2 1 4 4 O 1.42898 * 109.47588 * 120.00089 * 2 1 3 5 5 C 1.42900 * 113.99806 * 89.99832 * 4 2 1 6 6 C 1.53783 * 113.61766 * 210.00276 * 5 4 2 7 7 C 1.53781 * 87.08281 * 220.01947 * 6 5 4 8 8 S 1.81397 * 113.61324 * 139.97835 * 7 6 5 9 9 C 1.81397 * 102.99868 * 174.99891 * 8 7 6 10 10 C 1.50706 * 109.47319 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99302 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00436 * 179.72715 * 10 9 8 13 13 N 1.31514 * 120.00481 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99745 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47209 * 90.00365 * 14 12 10 16 16 H 1.48506 * 109.47294 * 210.00213 * 14 12 10 17 17 H 1.48501 * 109.47275 * 330.00116 * 14 12 10 18 18 C 1.53775 * 113.61573 * 112.50492 * 5 4 2 19 19 H 1.08996 * 109.47818 * 59.99744 * 1 2 3 20 20 H 1.09001 * 109.47498 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47166 * 299.99874 * 1 2 3 22 22 H 1.09004 * 109.46763 * 240.00466 * 2 1 3 23 23 H 1.09003 * 109.47036 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47277 * 300.00034 * 3 2 1 25 25 H 1.08994 * 109.46969 * 60.00712 * 3 2 1 26 26 H 1.09003 * 112.84985 * 341.20174 * 5 4 2 27 27 H 1.08999 * 113.61595 * 105.46622 * 6 5 4 28 28 H 1.09002 * 113.60959 * 334.57005 * 6 5 4 29 29 H 1.08996 * 113.61100 * 270.79966 * 7 6 5 30 30 H 1.09001 * 109.47514 * 60.00346 * 9 8 7 31 31 H 1.08998 * 109.47640 * 300.00326 * 9 8 7 32 32 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 33 33 H 1.09000 * 113.61367 * 25.43153 * 18 5 4 34 34 H 1.09006 * 113.61909 * 254.53171 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9885 6 6 1.9910 -2.8969 2.2734 7 6 3.2024 -3.7393 1.8400 8 16 4.3030 -4.1880 3.2103 9 6 5.5159 -5.2801 2.4186 10 6 6.5169 -5.7463 3.4442 11 1 6.4316 -5.4187 4.4698 12 6 7.5379 -6.5959 3.0746 13 7 8.4112 -7.0031 3.9697 14 14 7.6801 -7.1697 1.3026 15 1 8.5297 -6.2191 0.5411 16 1 8.2954 -8.5208 1.2676 17 1 6.3283 -7.2253 0.6903 18 6 3.6751 -2.5090 1.0477 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8932 -0.5138 -0.8901 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6627 -2.4736 0.1265 27 1 1.0544 -3.4542 2.2885 28 1 2.1601 -2.3266 3.1868 29 1 2.9399 -4.5904 1.2117 30 1 6.0323 -4.7366 1.6274 31 1 5.0043 -6.1430 1.9924 32 1 9.1293 -7.6011 3.7097 33 1 4.3046 -1.8327 1.6260 34 1 4.0982 -2.7533 0.0733 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591133007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:20 Heat of formation + Delta-G solvation = -60.469508 kcal Electronic energy + Delta-G solvation = -13793.224696 eV Core-core repulsion = 11430.922971 eV Total energy + Delta-G solvation = -2362.301725 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.36500 -37.61185 -35.21720 -33.07998 -31.45503 -28.09942 -26.75692 -26.05790 -24.49392 -22.19960 -20.82372 -19.10135 -18.40486 -17.03502 -16.53584 -16.25333 -15.82903 -15.61692 -14.94130 -14.69762 -14.40614 -14.00199 -13.71164 -13.46529 -13.26031 -13.03691 -12.74886 -12.69337 -12.54462 -12.35398 -12.09112 -11.80765 -11.67841 -11.54581 -11.31188 -10.90323 -10.60061 -10.35070 -8.50273 -8.38707 -6.48767 0.98317 1.32317 1.34841 1.45485 1.97323 2.28210 2.83756 2.93982 3.47360 3.57372 3.75498 3.88987 4.06605 4.17672 4.31932 4.34664 4.60764 4.66272 4.75118 4.78094 4.78923 4.86359 4.93518 4.94270 4.98685 5.07135 5.24409 5.32314 5.34213 5.37172 6.05854 6.43408 6.55109 7.13801 8.77485 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.050424 B = 0.004893 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.153339 B = 5720.929723 C = 5901.939556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.068 3.932 3 C -0.150 4.150 4 O -0.386 6.386 5 C 0.082 3.918 6 C -0.102 4.102 7 C -0.085 4.085 8 S -0.301 6.301 9 C 0.053 3.947 10 C -0.533 4.533 11 H 0.033 0.967 12 C 0.018 3.982 13 N -0.941 5.941 14 Si 0.956 3.044 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.245 1.245 18 C -0.144 4.144 19 H 0.081 0.919 20 H 0.058 0.942 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.116 0.884 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.273 0.727 33 H 0.080 0.920 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.297 12.366 -13.958 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 C -0.207 4.207 4 O -0.306 6.306 5 C 0.023 3.977 6 C -0.141 4.141 7 C -0.214 4.214 8 S -0.071 6.071 9 C -0.095 4.095 10 C -0.571 4.571 11 H 0.051 0.949 12 C -0.182 4.182 13 N -0.580 5.580 14 Si 0.778 3.222 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.169 1.169 18 C -0.184 4.184 19 H 0.100 0.900 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.107 0.893 25 H 0.075 0.925 26 H 0.133 0.867 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.159 12.653 -12.660 24.114 hybrid contribution 0.748 -1.026 -1.327 1.837 sum -15.411 11.626 -13.987 23.839 Atomic orbital electron populations 1.22297 0.94977 1.02611 1.02982 1.22387 0.94457 0.94167 0.87865 1.21888 1.01399 0.94313 1.03102 1.88006 1.85993 1.19844 1.36763 1.23590 0.94774 0.81110 0.98224 1.23012 0.96491 0.95955 0.98611 1.24481 0.98644 1.00074 0.98204 1.86803 1.34083 1.63901 1.22353 1.21144 0.95084 0.95810 0.97473 1.20722 1.11213 1.29827 0.95336 0.94881 1.25939 0.94098 0.95014 1.03126 1.70026 1.16318 1.34824 1.36832 0.85579 0.79971 0.78277 0.78382 1.18581 1.20077 1.16867 1.23795 0.98415 0.95624 1.00561 0.90005 0.92331 0.92559 0.91181 0.92842 0.89252 0.92467 0.86672 0.88262 0.90134 0.86763 0.94341 0.94100 0.91801 0.90178 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.53 71.98 0.69 -1.64 16 2 C 0.07 1.16 3.21 30.59 0.10 1.25 16 3 C -0.15 -2.29 9.56 71.98 0.69 -1.60 16 4 O -0.39 -9.15 10.00 -148.98 -1.49 -10.64 16 5 C 0.08 1.82 4.13 31.12 0.13 1.94 16 6 C -0.10 -2.58 7.50 31.12 0.23 -2.35 16 7 C -0.09 -2.59 4.28 31.12 0.13 -2.46 16 8 S -0.30 -13.10 21.45 -56.49 -1.21 -14.31 16 9 C 0.05 2.59 4.77 71.24 0.34 2.93 16 10 C -0.53 -31.97 9.68 25.60 0.25 -31.72 16 11 H 0.03 2.25 7.96 -2.91 -0.02 2.22 16 12 C 0.02 1.06 5.47 84.65 0.46 1.52 16 13 N -0.94 -59.17 13.96 21.45 0.30 -58.88 16 14 Si 0.96 43.21 27.47 68.60 1.88 45.10 16 15 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 17 H -0.25 -10.15 6.53 99.48 0.65 -9.50 16 18 C -0.14 -3.92 7.50 31.12 0.23 -3.68 16 19 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 20 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 21 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.07 1.03 7.73 -2.38 -0.02 1.01 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.12 1.88 7.77 -2.39 -0.02 1.86 16 27 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.08 2.35 8.10 -2.39 -0.02 2.33 16 29 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 30 H 0.04 1.80 7.58 -2.39 -0.02 1.78 16 31 H 0.04 1.92 7.18 -2.39 -0.02 1.90 16 32 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.08 2.55 8.10 -2.39 -0.02 2.53 16 34 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -68.82 295.26 3.72 -65.10 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.98 Total: 9.43 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 3.25 Total: -35.80 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.30 Total: -58.88 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -1.49 Total: -10.64 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.10 kcal Atomic # 16 Polarization: -13.10 SS G_CDS: -1.21 Total: -14.31 kcal Total: -68.82 3.72 -65.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591133007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.634 kcal (2) G-P(sol) polarization free energy of solvation -68.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds