Wall clock time and date at job start Sun Mar 29 2020 21:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34233 * 117.00253 * 2 1 4 4 O 1.20830 * 119.99326 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00431 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46922 * 39.99627 * 5 3 2 7 7 S 1.81398 * 109.47282 * 159.99921 * 5 3 2 8 8 C 1.81399 * 103.00088 * 184.99899 * 7 5 3 9 9 C 1.50699 * 109.47054 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99963 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00270 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00496 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47092 * 90.00048 * 13 11 9 15 15 H 1.48498 * 109.47340 * 210.00299 * 13 11 9 16 16 H 1.48501 * 109.47391 * 330.00372 * 13 11 9 17 17 C 1.53000 * 109.47167 * 279.99989 * 5 3 2 18 18 C 1.52995 * 117.50180 * 128.74511 * 17 5 3 19 19 C 1.53005 * 117.49959 * 60.08487 * 17 5 3 20 20 H 1.09003 * 109.47402 * 299.99911 * 1 2 3 21 21 H 1.09000 * 109.47590 * 59.99728 * 1 2 3 22 22 H 1.09003 * 109.47099 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47070 * 300.00061 * 8 7 5 24 24 H 1.09001 * 109.46593 * 60.00058 * 8 7 5 25 25 H 0.96992 * 120.00038 * 180.02562 * 12 11 9 26 26 H 1.09004 * 115.54854 * 274.42178 * 17 5 3 27 27 H 1.09010 * 117.49853 * 359.97438 * 18 17 5 28 28 H 1.09001 * 117.50017 * 145.01950 * 18 17 5 29 29 H 1.09002 * 117.49560 * 214.98560 * 19 17 5 30 30 H 1.09000 * 117.49576 * 359.97438 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9700 0.5079 -0.6614 7 16 4.0858 2.9116 -0.5854 8 6 5.8921 2.7633 -0.6617 9 6 6.4832 4.0645 -1.1398 10 1 5.8368 4.8972 -1.3746 11 6 7.8491 4.1919 -1.2773 12 7 8.6362 3.1776 -0.9918 13 14 8.5818 5.8045 -1.8706 14 1 8.8678 6.6772 -0.7036 15 1 9.8425 5.5341 -2.6072 16 1 7.6175 6.4843 -2.7725 17 6 4.0893 1.0512 1.4197 18 6 5.1823 -0.0019 1.6125 19 6 3.7562 -0.2815 2.0935 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 6.2797 2.5303 0.3300 24 1 6.1622 1.9658 -1.3540 25 1 9.5972 3.2674 -1.0882 26 1 4.1283 1.9386 2.0516 27 1 5.5285 -0.5358 0.7273 28 1 5.9403 0.1925 2.3712 29 1 3.5766 -0.2709 3.1686 30 1 3.1642 -0.9987 1.5250 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591133735.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:47 Heat of formation + Delta-G solvation = -68.341286 kcal Electronic energy + Delta-G solvation = -13884.952993 eV Core-core repulsion = 11386.476827 eV Total energy + Delta-G solvation = -2498.476166 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.32295 -37.23776 -36.27923 -33.14564 -30.03768 -28.52669 -27.27724 -23.21489 -22.23693 -21.81593 -20.25172 -17.61260 -16.90201 -16.36603 -16.20253 -15.70829 -14.76904 -14.34730 -14.13681 -13.45884 -13.04384 -12.55690 -12.33358 -12.24206 -12.02801 -11.48573 -11.38385 -10.90241 -10.78429 -10.72954 -10.67438 -10.47866 -9.87538 -9.73852 -9.58107 -8.79553 -8.61529 -6.74712 -6.19925 -4.24000 2.05813 2.40758 2.97739 3.26832 3.32473 3.37939 3.78217 4.05401 4.35856 4.72855 4.91035 5.08394 5.11817 5.15622 5.17274 5.18678 5.36455 5.49232 5.63378 5.79701 6.06135 6.28469 6.33919 6.44795 7.08421 7.13533 7.74655 7.90560 8.00172 8.77730 9.39021 10.91306 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.040374 B = 0.006630 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.350991 B = 4222.303710 C = 4748.060147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.487 3.513 4 O -0.485 6.485 5 C -0.038 4.038 6 H 0.110 0.890 7 S -0.231 6.231 8 C 0.082 3.918 9 C -0.513 4.513 10 H 0.067 0.933 11 C 0.067 3.933 12 N -0.892 5.892 13 Si 0.906 3.094 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.271 1.271 17 C -0.147 4.147 18 C -0.160 4.160 19 C -0.179 4.179 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.099 0.901 23 H 0.042 0.958 24 H 0.035 0.965 25 H 0.265 0.735 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 -8.811 4.183 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.328 3.672 4 O -0.371 6.371 5 C -0.167 4.167 6 H 0.128 0.872 7 S -0.002 6.002 8 C -0.065 4.065 9 C -0.552 4.552 10 H 0.085 0.915 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.733 3.267 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.195 1.195 17 C -0.167 4.167 18 C -0.197 4.197 19 C -0.218 4.218 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.117 0.883 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.139 0.861 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.022 -7.676 3.904 13.988 hybrid contribution 1.088 -0.241 -0.024 1.114 sum -9.935 -7.918 3.880 13.283 Atomic orbital electron populations 1.23232 0.76730 1.03340 1.02545 1.86506 1.23028 1.33405 1.84504 1.22905 0.90628 0.81394 0.72319 1.90673 1.66432 1.36078 1.43880 1.22489 0.90049 1.04333 0.99838 0.87225 1.87161 1.14430 1.12305 1.86350 1.21170 0.83446 1.01198 1.00644 1.20643 0.91627 0.97122 1.45835 0.91476 1.24935 0.96478 0.97254 0.95022 1.69953 1.04395 1.30620 1.48001 0.86353 0.78504 0.82838 0.78983 1.20327 1.20979 1.19533 1.22483 1.04931 0.94852 0.94418 1.23042 0.91723 1.01252 1.03651 1.23131 0.99271 0.98722 1.00692 0.92002 0.91947 0.88295 0.93925 0.94630 0.92509 0.86077 0.88389 0.88132 0.88739 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.05 9.60 -39.27 -0.38 -5.43 16 3 C 0.49 8.44 6.85 36.00 0.25 8.69 16 4 O -0.49 -9.70 15.79 -18.75 -0.30 -10.00 16 5 C -0.04 -0.68 2.91 -27.88 -0.08 -0.76 16 6 H 0.11 1.86 7.90 -51.93 -0.41 1.45 16 7 S -0.23 -5.23 20.29 -107.50 -2.18 -7.41 16 8 C 0.08 2.11 5.49 36.01 0.20 2.31 16 9 C -0.51 -14.41 9.13 -34.44 -0.31 -14.73 16 10 H 0.07 1.90 7.71 -52.48 -0.40 1.50 16 11 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 12 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 13 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 C -0.15 -2.36 4.79 -90.62 -0.43 -2.80 16 18 C -0.16 -2.28 10.18 -26.70 -0.27 -2.56 16 19 C -0.18 -2.29 9.81 -26.69 -0.26 -2.55 16 20 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 21 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 22 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.04 1.12 8.00 -51.92 -0.42 0.70 16 24 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 25 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.12 2.08 8.11 -51.93 -0.42 1.66 16 27 H 0.10 1.39 8.05 -51.92 -0.42 0.98 16 28 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.10 1.23 7.28 -51.93 -0.38 0.85 16 LS Contribution 279.21 15.07 4.21 4.21 Total: -1.00 -30.66 279.21 -7.00 -37.66 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.12 Total: -1.32 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 0.05 Total: -9.19 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.74 Total: -24.82 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.67 Total: -15.42 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -2.18 Total: -7.41 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.66 -7.00 -37.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591133735.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.686 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds