Wall clock time and date at job start Sun Mar 29 2020 21:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34233 * 117.00253 * 2 1 4 4 O 1.20830 * 119.99326 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00431 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46922 * 39.99627 * 5 3 2 7 7 S 1.81398 * 109.47282 * 159.99921 * 5 3 2 8 8 C 1.81399 * 103.00088 * 184.99899 * 7 5 3 9 9 C 1.50699 * 109.47054 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99963 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00270 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00496 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47092 * 90.00048 * 13 11 9 15 15 H 1.48498 * 109.47340 * 210.00299 * 13 11 9 16 16 H 1.48501 * 109.47391 * 330.00372 * 13 11 9 17 17 C 1.53000 * 109.47167 * 279.99989 * 5 3 2 18 18 C 1.52995 * 117.50180 * 128.74511 * 17 5 3 19 19 C 1.53005 * 117.49959 * 60.08487 * 17 5 3 20 20 H 1.09003 * 109.47402 * 299.99911 * 1 2 3 21 21 H 1.09000 * 109.47590 * 59.99728 * 1 2 3 22 22 H 1.09003 * 109.47099 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47070 * 300.00061 * 8 7 5 24 24 H 1.09001 * 109.46593 * 60.00058 * 8 7 5 25 25 H 0.96992 * 120.00038 * 180.02562 * 12 11 9 26 26 H 1.09004 * 115.54854 * 274.42178 * 17 5 3 27 27 H 1.09010 * 117.49853 * 359.97438 * 18 17 5 28 28 H 1.09001 * 117.50017 * 145.01950 * 18 17 5 29 29 H 1.09002 * 117.49560 * 214.98560 * 19 17 5 30 30 H 1.09000 * 117.49576 * 359.97438 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9700 0.5079 -0.6614 7 16 4.0858 2.9116 -0.5854 8 6 5.8921 2.7633 -0.6617 9 6 6.4832 4.0645 -1.1398 10 1 5.8368 4.8972 -1.3746 11 6 7.8491 4.1919 -1.2773 12 7 8.6362 3.1776 -0.9918 13 14 8.5818 5.8045 -1.8706 14 1 8.8678 6.6772 -0.7036 15 1 9.8425 5.5341 -2.6072 16 1 7.6175 6.4843 -2.7725 17 6 4.0893 1.0512 1.4197 18 6 5.1823 -0.0019 1.6125 19 6 3.7562 -0.2815 2.0935 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 6.2797 2.5303 0.3300 24 1 6.1622 1.9658 -1.3540 25 1 9.5972 3.2674 -1.0882 26 1 4.1283 1.9386 2.0516 27 1 5.5285 -0.5358 0.7273 28 1 5.9403 0.1925 2.3712 29 1 3.5766 -0.2709 3.1686 30 1 3.1642 -0.9987 1.5250 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591133735.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:47 Heat of formation + Delta-G solvation = -85.572815 kcal Electronic energy + Delta-G solvation = -13885.700208 eV Core-core repulsion = 11386.476827 eV Total energy + Delta-G solvation = -2499.223381 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.63079 -38.42896 -37.57263 -35.27791 -31.36646 -30.63604 -28.25818 -25.25901 -23.42979 -23.04057 -21.53956 -18.94314 -18.77670 -17.85566 -17.56074 -17.18503 -16.55447 -15.65653 -15.54838 -14.70367 -14.45589 -14.34946 -14.24378 -14.06555 -13.04200 -12.83431 -12.71867 -12.60427 -12.42659 -12.22843 -11.97843 -11.83528 -11.62866 -11.41293 -11.00705 -10.72743 -10.59081 -8.58975 -8.32519 -6.45177 0.49142 1.04202 1.41191 1.41906 1.54007 1.67042 1.94396 2.37826 2.88148 3.02338 3.45590 3.70082 3.85725 3.94505 4.15443 4.31852 4.33069 4.41159 4.69747 4.76789 4.95658 4.96000 5.01904 5.10737 5.20832 5.23574 5.57775 5.89402 6.59387 6.61019 7.22403 8.79198 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.040374 B = 0.006630 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.350991 B = 4222.303710 C = 4748.060147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.495 3.505 4 O -0.518 6.518 5 C -0.026 4.026 6 H 0.120 0.880 7 S -0.262 6.262 8 C 0.097 3.903 9 C -0.541 4.541 10 H 0.058 0.942 11 C 0.021 3.979 12 N -0.919 5.919 13 Si 0.973 3.027 14 H -0.269 1.269 15 H -0.273 1.273 16 H -0.269 1.269 17 C -0.175 4.175 18 C -0.163 4.163 19 C -0.143 4.143 20 H 0.064 0.936 21 H 0.059 0.941 22 H 0.141 0.859 23 H 0.028 0.972 24 H 0.018 0.982 25 H 0.271 0.729 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.960 -9.786 4.579 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.336 3.664 4 O -0.406 6.406 5 C -0.155 4.155 6 H 0.138 0.862 7 S -0.033 6.033 8 C -0.050 4.050 9 C -0.580 4.580 10 H 0.076 0.924 11 C -0.181 4.181 12 N -0.558 5.558 13 Si 0.797 3.203 14 H -0.194 1.194 15 H -0.198 1.198 16 H -0.193 1.193 17 C -0.195 4.195 18 C -0.200 4.200 19 C -0.181 4.181 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.159 0.841 23 H 0.046 0.954 24 H 0.036 0.964 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.668 -8.676 4.303 15.163 hybrid contribution 1.166 -0.065 -0.116 1.174 sum -10.501 -8.741 4.187 14.290 Atomic orbital electron populations 1.23649 0.74189 1.06128 1.02635 1.86481 1.25303 1.31110 1.83628 1.22670 0.90145 0.81922 0.71626 1.90664 1.66965 1.37338 1.45652 1.22433 0.91119 1.00813 1.01166 0.86185 1.87055 1.12080 1.17022 1.87133 1.20786 0.85577 0.99700 0.98986 1.20947 0.92384 0.97870 1.46760 0.92407 1.25809 0.96708 1.00807 0.94732 1.70039 1.04890 1.32496 1.48356 0.85323 0.77801 0.78505 0.78698 1.19431 1.19841 1.19313 1.22352 1.07675 0.96031 0.93460 1.23112 0.92644 1.00329 1.03939 1.23235 0.97531 0.95535 1.01825 0.91714 0.92192 0.84116 0.95389 0.96406 0.92003 0.87678 0.88473 0.87798 0.86503 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.35 -8.99 9.60 -51.45 -0.49 -9.49 16 3 C 0.49 16.64 6.85 71.23 0.49 17.12 16 4 O -0.52 -20.54 15.79 21.95 0.35 -20.19 16 5 C -0.03 -0.92 2.91 29.85 0.09 -0.83 16 6 H 0.12 4.00 7.90 -2.39 -0.02 3.98 16 7 S -0.26 -12.15 20.29 -56.49 -1.15 -13.29 16 8 C 0.10 5.13 5.49 71.24 0.39 5.52 16 9 C -0.54 -31.12 9.13 25.60 0.23 -30.89 16 10 H 0.06 3.36 7.71 -2.91 -0.02 3.34 16 11 C 0.02 1.17 5.46 84.65 0.46 1.63 16 12 N -0.92 -53.14 13.29 21.45 0.28 -52.86 16 13 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 C -0.18 -5.53 4.79 -10.79 -0.05 -5.58 16 18 C -0.16 -4.48 10.18 30.62 0.31 -4.17 16 19 C -0.14 -3.25 9.81 30.62 0.30 -2.95 16 20 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 21 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 22 H 0.14 1.38 8.14 -2.39 -0.02 1.37 16 23 H 0.03 1.52 8.00 -2.39 -0.02 1.50 16 24 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16 25 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.11 3.65 8.11 -2.38 -0.02 3.64 16 27 H 0.10 2.67 8.05 -2.38 -0.02 2.65 16 28 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.11 2.35 7.28 -2.39 -0.02 2.33 16 Total: -1.00 -66.51 279.21 5.55 -60.96 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.12 Total: 7.57 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 3.42 Total: -18.47 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.28 Total: -52.86 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.15 Total: -29.68 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -12.15 SS G_CDS: -1.15 Total: -13.29 kcal Total: -66.51 5.55 -60.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591133735.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.615 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds