Wall clock time and date at job start Sun Mar 29 2020 22:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.99147 * 2 1 4 4 C 1.54099 * 109.87864 * 121.08581 * 2 1 3 5 5 C 1.54803 * 104.18968 * 117.39071 * 4 2 1 6 6 C 1.54990 * 102.09265 * 339.12264 * 5 4 2 7 7 H 1.09001 * 110.62060 * 278.35771 * 6 5 4 8 8 C 1.52997 * 110.61993 * 155.52227 * 6 5 4 9 9 S 1.81401 * 109.47326 * 179.97438 * 8 6 5 10 10 C 1.81400 * 103.00097 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.47256 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47288 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46819 * 299.99648 * 15 13 11 19 19 O 1.43735 * 109.87827 * 238.91602 * 2 1 3 20 20 H 1.08998 * 109.46969 * 298.91871 * 1 2 3 21 21 H 1.09004 * 109.46712 * 58.91320 * 1 2 3 22 22 H 1.09001 * 109.47322 * 178.91346 * 1 2 3 23 23 H 1.09005 * 109.47257 * 181.07963 * 3 2 1 24 24 H 1.09001 * 109.47401 * 301.08448 * 3 2 1 25 25 H 1.09001 * 109.47341 * 61.08679 * 3 2 1 26 26 H 1.09006 * 110.48649 * 358.71676 * 4 2 1 27 27 H 1.09003 * 110.60347 * 236.12762 * 4 2 1 28 28 H 1.08999 * 110.90842 * 220.91827 * 5 4 2 29 29 H 1.09001 * 110.93472 * 97.32897 * 5 4 2 30 30 H 1.09007 * 109.47220 * 59.99842 * 8 6 5 31 31 H 1.08998 * 109.47223 * 300.00090 * 8 6 5 32 32 H 1.09001 * 109.46713 * 60.00360 * 10 9 8 33 33 H 1.09000 * 109.47712 * 300.00668 * 10 9 8 34 34 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 6 2.0540 -0.7482 1.2411 5 6 2.8323 -1.9525 0.6576 6 6 2.2280 -2.0713 -0.7647 7 1 1.2827 -2.6132 -0.7360 8 6 3.2125 -2.7589 -1.7127 9 16 2.4748 -2.8823 -3.3653 10 6 3.7697 -3.7094 -4.3295 11 6 3.3008 -3.8887 -5.7505 12 1 2.3220 -3.5395 -6.0442 13 6 4.1215 -4.4983 -6.6755 14 7 5.3134 -4.9240 -6.3177 15 14 3.5406 -4.7199 -8.4371 16 1 3.2523 -3.3911 -9.0340 17 1 4.6006 -5.3971 -9.2264 18 1 2.3074 -5.5471 -8.4512 19 8 2.0187 -0.6979 -1.1576 20 1 -0.3633 0.4969 0.8995 21 1 -0.3633 0.5307 -0.8801 22 1 -0.3634 -1.0275 -0.0195 23 1 3.1429 1.4279 -0.0194 24 1 1.6787 1.9606 -0.8801 25 1 1.7104 1.9491 0.8996 26 1 1.2237 -1.0931 1.8574 27 1 2.7192 -0.1092 1.8218 28 1 2.6431 -2.8558 1.2375 29 1 3.9003 -1.7397 0.6098 30 1 3.4379 -3.7583 -1.3402 31 1 4.1318 -2.1758 -1.7674 32 1 3.9818 -4.6848 -3.8915 33 1 4.6747 -3.1020 -4.3190 34 1 5.8909 -5.3526 -6.9687 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591133780.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:29 Heat of formation + Delta-G solvation = -70.561374 kcal Electronic energy + Delta-G solvation = -14029.757920 eV Core-core repulsion = 11667.018579 eV Total energy + Delta-G solvation = -2362.739342 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.80884 -33.62553 -33.08251 -32.17274 -29.04962 -28.42148 -27.42672 -23.89446 -22.86533 -21.02918 -20.03668 -16.64862 -16.41112 -15.46584 -15.21166 -14.70794 -14.46511 -13.86542 -13.56135 -13.12295 -12.81714 -12.61375 -12.34541 -12.20192 -12.09569 -11.75525 -11.62549 -11.51443 -11.16108 -10.80985 -10.73623 -10.60855 -10.56063 -9.85619 -9.47409 -9.45296 -8.72432 -8.55531 -6.53777 -6.13864 -4.17455 2.71098 3.32243 3.34704 3.39723 3.86630 3.97952 4.40453 4.51225 4.69776 4.78149 5.03635 5.10818 5.23135 5.23366 5.44222 5.49898 5.54138 5.54412 5.68121 5.72174 5.82031 5.86851 5.94327 6.06618 6.15184 6.23028 6.27183 7.16288 7.17306 7.19233 7.80916 8.08405 8.84216 9.45054 10.97639 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053619 B = 0.005025 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.077473 B = 5570.641921 C = 5797.142019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.148 4.148 6 C 0.099 3.901 7 H 0.074 0.926 8 C -0.087 4.087 9 S -0.293 6.293 10 C 0.087 3.913 11 C -0.510 4.510 12 H 0.066 0.934 13 C 0.064 3.936 14 N -0.895 5.895 15 Si 0.907 3.093 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 O -0.346 6.346 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 7.909 15.623 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 C -0.199 4.199 4 C -0.183 4.183 5 C -0.187 4.187 6 C 0.041 3.959 7 H 0.092 0.908 8 C -0.235 4.235 9 S -0.066 6.066 10 C -0.060 4.060 11 C -0.549 4.549 12 H 0.085 0.915 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.733 3.267 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.199 1.199 19 O -0.265 6.265 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.460 8.256 15.009 18.307 hybrid contribution 1.020 -0.729 -0.328 1.296 sum -5.439 7.526 14.681 17.372 Atomic orbital electron populations 1.22247 0.95103 1.02445 1.02138 1.22080 0.93605 0.93317 0.85781 1.21876 1.01698 0.94208 1.02090 1.23024 1.00259 0.97251 0.97765 1.23186 1.00904 0.98517 0.96137 1.22762 0.97339 0.84183 0.91642 0.90770 1.23235 1.00802 1.02218 0.97229 1.86748 1.33295 1.80917 1.05609 1.21040 0.92211 0.96405 0.96318 1.20659 1.02476 1.39394 0.92385 0.91546 1.24965 0.94696 0.94993 0.99260 1.69955 1.08539 1.39584 1.35253 0.86413 0.78348 0.78593 0.83299 1.19907 1.21096 1.19925 1.89091 1.85708 1.19867 1.31883 0.92051 0.91752 0.92305 0.91970 0.91819 0.91739 0.90761 0.90568 0.90250 0.90362 0.89815 0.90318 0.94831 0.94736 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.61 37.16 0.32 -1.45 16 2 C 0.09 1.12 1.19 -90.05 -0.11 1.01 16 3 C -0.14 -1.51 8.68 37.15 0.32 -1.19 16 4 C -0.15 -1.46 6.27 -25.21 -0.16 -1.62 16 5 C -0.15 -1.69 6.59 -24.73 -0.16 -1.85 16 6 C 0.10 1.50 3.27 -25.68 -0.08 1.42 16 7 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 8 C -0.09 -1.55 5.71 37.16 0.21 -1.34 16 9 S -0.29 -6.78 21.51 -107.50 -2.31 -9.09 16 10 C 0.09 2.36 5.70 36.01 0.21 2.57 16 11 C -0.51 -14.89 9.13 -34.44 -0.31 -15.20 16 12 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 13 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 14 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 15 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 O -0.35 -5.70 10.39 -35.23 -0.37 -6.06 16 20 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.65 7.70 -51.93 -0.40 0.25 16 27 H 0.08 0.67 7.70 -51.93 -0.40 0.27 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 30 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.03 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.03 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 293.78 15.07 4.43 4.43 Total: -1.00 -30.98 293.78 -8.23 -39.21 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.83 Total: -3.55 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 0.14 Total: -15.90 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.37 Total: -6.06 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -6.78 SS G_CDS: -2.31 Total: -9.09 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.98 -8.23 -39.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591133780.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.350 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds