Wall clock time and date at job start Sun Mar 29 2020 22:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.99147 * 2 1 4 4 C 1.54099 * 109.87864 * 121.08581 * 2 1 3 5 5 C 1.54803 * 104.18968 * 117.39071 * 4 2 1 6 6 C 1.54990 * 102.09265 * 339.12264 * 5 4 2 7 7 H 1.09001 * 110.62060 * 278.35771 * 6 5 4 8 8 C 1.52997 * 110.61993 * 155.52227 * 6 5 4 9 9 S 1.81401 * 109.47326 * 179.97438 * 8 6 5 10 10 C 1.81400 * 103.00097 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.47256 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47288 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46819 * 299.99648 * 15 13 11 19 19 O 1.43735 * 109.87827 * 238.91602 * 2 1 3 20 20 H 1.08998 * 109.46969 * 298.91871 * 1 2 3 21 21 H 1.09004 * 109.46712 * 58.91320 * 1 2 3 22 22 H 1.09001 * 109.47322 * 178.91346 * 1 2 3 23 23 H 1.09005 * 109.47257 * 181.07963 * 3 2 1 24 24 H 1.09001 * 109.47401 * 301.08448 * 3 2 1 25 25 H 1.09001 * 109.47341 * 61.08679 * 3 2 1 26 26 H 1.09006 * 110.48649 * 358.71676 * 4 2 1 27 27 H 1.09003 * 110.60347 * 236.12762 * 4 2 1 28 28 H 1.08999 * 110.90842 * 220.91827 * 5 4 2 29 29 H 1.09001 * 110.93472 * 97.32897 * 5 4 2 30 30 H 1.09007 * 109.47220 * 59.99842 * 8 6 5 31 31 H 1.08998 * 109.47223 * 300.00090 * 8 6 5 32 32 H 1.09001 * 109.46713 * 60.00360 * 10 9 8 33 33 H 1.09000 * 109.47712 * 300.00668 * 10 9 8 34 34 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 6 2.0540 -0.7482 1.2411 5 6 2.8323 -1.9525 0.6576 6 6 2.2280 -2.0713 -0.7647 7 1 1.2827 -2.6132 -0.7360 8 6 3.2125 -2.7589 -1.7127 9 16 2.4748 -2.8823 -3.3653 10 6 3.7697 -3.7094 -4.3295 11 6 3.3008 -3.8887 -5.7505 12 1 2.3220 -3.5395 -6.0442 13 6 4.1215 -4.4983 -6.6755 14 7 5.3134 -4.9240 -6.3177 15 14 3.5406 -4.7199 -8.4371 16 1 3.2523 -3.3911 -9.0340 17 1 4.6006 -5.3971 -9.2264 18 1 2.3074 -5.5471 -8.4512 19 8 2.0187 -0.6979 -1.1576 20 1 -0.3633 0.4969 0.8995 21 1 -0.3633 0.5307 -0.8801 22 1 -0.3634 -1.0275 -0.0195 23 1 3.1429 1.4279 -0.0194 24 1 1.6787 1.9606 -0.8801 25 1 1.7104 1.9491 0.8996 26 1 1.2237 -1.0931 1.8574 27 1 2.7192 -0.1092 1.8218 28 1 2.6431 -2.8558 1.2375 29 1 3.9003 -1.7397 0.6098 30 1 3.4379 -3.7583 -1.3402 31 1 4.1318 -2.1758 -1.7674 32 1 3.9818 -4.6848 -3.8915 33 1 4.6747 -3.1020 -4.3190 34 1 5.8909 -5.3526 -6.9687 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591133780.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:28 Heat of formation + Delta-G solvation = -88.777916 kcal Electronic energy + Delta-G solvation = -14030.547849 eV Core-core repulsion = 11667.018579 eV Total energy + Delta-G solvation = -2363.529270 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.82973 -35.30465 -34.66069 -33.22773 -30.71127 -30.12662 -28.26545 -25.47354 -24.48974 -22.16159 -20.97822 -18.67293 -17.70697 -17.17536 -16.37546 -16.32067 -15.73473 -14.99649 -14.82450 -14.52339 -14.41638 -14.25913 -13.95089 -13.53755 -13.10460 -12.91275 -12.83109 -12.71345 -12.57777 -12.40288 -12.28302 -11.85483 -11.55899 -11.49898 -11.30788 -10.77003 -10.75153 -10.48690 -8.44500 -8.34260 -6.47830 0.99406 1.39039 1.42802 1.51780 2.04587 2.36388 2.83488 2.99926 3.56264 3.74311 3.92529 4.00235 4.08254 4.22539 4.38069 4.47470 4.51449 4.71882 4.76139 4.82079 4.91603 4.92369 4.92950 4.96992 5.00856 5.10738 5.21259 5.30032 5.42118 5.55550 5.87862 6.15860 6.58973 7.20059 8.77842 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053619 B = 0.005025 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.077473 B = 5570.641921 C = 5797.142019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.078 3.922 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.140 4.140 6 C 0.097 3.903 7 H 0.073 0.927 8 C -0.073 4.073 9 S -0.313 6.313 10 C 0.092 3.908 11 C -0.539 4.539 12 H 0.060 0.940 13 C 0.014 3.986 14 N -0.926 5.926 15 Si 0.978 3.022 16 H -0.268 1.268 17 H -0.273 1.273 18 H -0.265 1.265 19 O -0.384 6.384 20 H 0.089 0.911 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.016 0.984 33 H 0.010 0.990 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 8.303 16.922 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 C -0.197 4.197 4 C -0.174 4.174 5 C -0.179 4.179 6 C 0.039 3.961 7 H 0.090 0.910 8 C -0.221 4.221 9 S -0.086 6.086 10 C -0.055 4.055 11 C -0.577 4.577 12 H 0.078 0.922 13 C -0.186 4.186 14 N -0.564 5.564 15 Si 0.801 3.199 16 H -0.192 1.192 17 H -0.198 1.198 18 H -0.190 1.190 19 O -0.304 6.304 20 H 0.108 0.892 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.034 0.966 33 H 0.028 0.972 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.182 8.655 16.319 19.819 hybrid contribution 1.245 -0.797 -0.627 1.605 sum -5.937 7.858 15.692 18.527 Atomic orbital electron populations 1.22244 0.94384 1.02210 1.02878 1.22431 0.94314 0.93854 0.85513 1.21903 1.01299 0.93577 1.02947 1.23027 1.01011 0.96477 0.96921 1.23170 1.00877 1.00333 0.93543 1.22783 0.96699 0.83770 0.92874 0.90956 1.23389 1.01201 1.03617 0.93902 1.86632 1.32509 1.80175 1.09281 1.20725 0.92618 0.95423 0.96757 1.20970 1.02600 1.40365 0.93805 0.92188 1.25938 0.94624 0.94090 1.03969 1.70059 1.09594 1.39775 1.37017 0.85305 0.78311 0.78874 0.77408 1.19246 1.19819 1.18980 1.89057 1.86245 1.20470 1.34624 0.89198 0.93235 0.92912 0.92539 0.93161 0.88794 0.88780 0.88728 0.88016 0.90323 0.88293 0.90679 0.96616 0.97157 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 8.61 71.98 0.62 -2.58 16 2 C 0.08 1.74 1.19 -10.42 -0.01 1.73 16 3 C -0.14 -2.74 8.68 71.98 0.62 -2.11 16 4 C -0.14 -2.28 6.27 31.58 0.20 -2.08 16 5 C -0.14 -2.81 6.59 31.89 0.21 -2.60 16 6 C 0.10 2.83 3.27 31.27 0.10 2.93 16 7 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 8 C -0.07 -2.60 5.71 71.98 0.41 -2.19 16 9 S -0.31 -14.86 21.51 -56.49 -1.21 -16.07 16 10 C 0.09 5.19 5.70 71.24 0.41 5.60 16 11 C -0.54 -32.27 9.13 25.60 0.23 -32.04 16 12 H 0.06 3.59 7.71 -2.91 -0.02 3.57 16 13 C 0.01 0.84 5.46 84.65 0.46 1.30 16 14 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 15 Si 0.98 44.91 29.54 68.60 2.03 46.93 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 19 O -0.38 -12.42 10.39 -148.98 -1.55 -13.97 16 20 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.05 1.10 8.12 -2.39 -0.02 1.08 16 23 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.09 1.22 7.70 -2.38 -0.02 1.21 16 27 H 0.09 1.26 7.70 -2.39 -0.02 1.25 16 28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.59 8.06 -2.39 -0.02 1.57 16 30 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.01 0.60 8.14 -2.39 -0.02 0.59 16 34 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -68.14 293.78 3.84 -64.30 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.04 Total: 6.43 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 3.25 Total: -32.03 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.28 Total: -55.59 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -1.55 Total: -13.97 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: -14.86 SS G_CDS: -1.21 Total: -16.07 kcal Total: -68.14 3.84 -64.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591133780.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.478 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds