Wall clock time and date at job start Sun Mar 29 2020 21:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48505 * 109.46903 * 270.00200 * 3 2 1 5 5 H 1.48497 * 109.47090 * 29.99585 * 3 2 1 6 6 H 1.48491 * 109.47149 * 149.99789 * 3 2 1 7 7 C 1.37877 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00019 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00065 * 180.02562 * 7 2 1 10 10 S 1.81004 * 109.47231 * 179.97438 * 9 7 2 11 11 C 1.76202 * 99.99887 * 179.97438 * 10 9 7 12 12 N 1.33031 * 120.54504 * 359.97438 * 11 10 9 13 13 C 1.31750 * 120.69225 * 180.02562 * 12 11 10 14 14 N 1.31775 * 121.86115 * 359.97438 * 13 12 11 15 15 C 1.32594 * 121.03384 * 0.02562 * 14 13 12 16 16 C 1.38167 * 119.18934 * 0.02562 * 15 14 13 17 17 Cl 1.73603 * 120.84517 * 180.02562 * 16 15 14 18 18 H 0.97001 * 119.99950 * 0.02562 * 1 2 3 19 19 H 1.08996 * 109.47398 * 59.99316 * 9 7 2 20 20 H 1.08998 * 109.46843 * 299.99425 * 9 7 2 21 21 H 1.07994 * 119.06611 * 179.97438 * 13 12 11 22 22 H 1.08002 * 120.40614 * 179.72914 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 16 4.1148 -2.9006 -0.0001 11 6 5.8528 -2.6107 -0.0001 12 7 6.3311 -1.3693 -0.0006 13 6 7.6301 -1.1492 -0.0011 14 7 8.5029 -2.1364 -0.0007 15 6 8.1045 -3.4011 -0.0003 16 6 6.7516 -3.6813 -0.0008 17 17 6.1823 -5.3214 0.0004 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6808 0.8904 20 1 3.8751 -0.6798 -0.8895 21 1 7.9896 -0.1308 -0.0019 22 1 8.8287 -4.2023 -0.0044 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591184047.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:00 Heat of formation + Delta-G solvation = 33.029847 kcal Electronic energy + Delta-G solvation = -11223.644949 eV Core-core repulsion = 8930.900292 eV Total energy + Delta-G solvation = -2292.744657 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.998 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.73249 -36.68472 -33.74148 -33.12790 -31.62518 -29.49347 -24.91625 -24.36636 -22.51351 -18.43017 -17.71322 -16.89677 -16.15212 -15.30801 -15.08590 -14.24107 -13.72482 -13.41009 -12.90625 -12.46064 -12.20956 -11.39863 -11.29495 -11.16599 -10.97057 -10.76171 -10.25715 -9.94067 -9.48065 -9.39166 -9.12780 -8.79151 -7.30085 -6.27213 -4.32385 0.73475 0.94657 1.80804 2.05136 3.04858 3.21107 3.29717 3.33063 3.65286 4.12765 4.26541 4.31708 4.58657 5.04486 5.05522 5.40901 6.16584 6.59647 6.63277 6.77516 7.29505 7.99737 8.15514 8.69959 9.27996 10.84027 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.037517 B = 0.008258 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.148860 B = 3390.039945 C = 4121.045270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.085 3.915 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.529 4.529 8 H 0.084 0.916 9 C 0.021 3.979 10 S -0.004 6.004 11 C 0.165 3.835 12 N -0.513 5.513 13 C 0.311 3.689 14 N -0.532 5.532 15 C 0.171 3.829 16 C -0.146 4.146 17 Cl -0.033 7.033 18 H 0.270 0.730 19 H 0.052 0.948 20 H 0.048 0.952 21 H 0.200 0.800 22 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.501 -5.577 0.025 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.120 4.120 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.568 4.568 8 H 0.102 0.898 9 C -0.127 4.127 10 S 0.240 5.760 11 C -0.091 4.091 12 N -0.232 5.232 13 C 0.020 3.980 14 N -0.250 5.250 15 C 0.006 3.994 16 C -0.187 4.187 17 Cl -0.004 7.004 18 H 0.080 0.920 19 H 0.071 0.929 20 H 0.066 0.934 21 H 0.216 0.784 22 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 13.815 -5.691 0.029 14.941 hybrid contribution 0.735 1.145 -0.022 1.360 sum 14.549 -4.546 0.006 15.243 Atomic orbital electron populations 1.69857 1.06212 1.27578 1.48721 1.24811 0.94734 0.98869 0.93610 0.86797 0.80619 0.83201 0.79089 1.19772 1.20802 1.18375 1.20445 0.86622 0.95529 1.54221 0.89833 1.21741 1.00786 0.88684 1.01470 1.86126 0.87561 1.17616 1.84692 1.24394 1.02551 0.89902 0.92297 1.69093 1.16968 1.20253 1.16882 1.25036 0.84609 0.99359 0.89042 1.68552 1.39541 0.99664 1.17240 1.23014 0.91824 0.94702 0.89897 1.22259 0.95646 0.88007 1.12792 1.98372 1.89071 1.16254 1.96750 0.92037 0.92932 0.93396 0.78368 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.96 55.43 0.77 -25.43 14 2 C 0.09 2.39 5.47 -17.82 -0.10 2.30 14 3 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 14 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 14 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 14 6 H -0.26 -5.96 6.54 56.52 0.37 -5.59 14 7 C -0.53 -14.61 9.68 -34.44 -0.33 -14.94 14 8 H 0.08 2.48 7.95 -52.48 -0.42 2.07 14 9 C 0.02 0.51 3.70 36.00 0.13 0.64 14 10 S 0.00 -0.08 21.05 -107.50 -2.26 -2.34 14 11 C 0.17 2.97 7.01 -16.45 -0.12 2.86 14 12 N -0.51 -9.17 9.31 -13.35 -0.12 -9.30 14 13 C 0.31 4.51 12.28 -92.21 -1.13 3.38 14 14 N -0.53 -7.41 10.43 -14.65 -0.15 -7.57 14 15 C 0.17 2.21 11.11 -17.25 -0.19 2.02 14 16 C -0.15 -2.20 6.38 -39.03 -0.25 -2.44 14 17 Cl -0.03 -0.45 28.03 -51.86 -1.45 -1.90 14 18 H 0.27 7.40 8.31 -40.82 -0.34 7.06 14 19 H 0.05 1.26 7.20 -51.92 -0.37 0.89 14 20 H 0.05 1.14 7.56 -51.92 -0.39 0.74 14 21 H 0.20 2.16 8.06 -52.49 -0.42 1.74 14 22 H 0.17 1.59 8.06 -52.49 -0.42 1.17 14 LS Contribution 233.77 15.07 3.52 3.52 Total: -1.00 -29.61 233.77 -7.55 -37.16 By element: Atomic # 1 Polarization: -2.87 SS G_CDS: -1.20 Total: -4.07 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.99 Total: -6.19 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.50 Total: -42.29 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.26 Total: -2.34 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.45 Total: -1.90 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.61 -7.55 -37.16 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591184047.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.185 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds