Wall clock time and date at job start Sun Mar 29 2020 21:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48505 * 109.46903 * 270.00200 * 3 2 1 5 5 H 1.48497 * 109.47090 * 29.99585 * 3 2 1 6 6 H 1.48491 * 109.47149 * 149.99789 * 3 2 1 7 7 C 1.37877 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00019 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00065 * 180.02562 * 7 2 1 10 10 S 1.81004 * 109.47231 * 179.97438 * 9 7 2 11 11 C 1.76202 * 99.99887 * 179.97438 * 10 9 7 12 12 N 1.33031 * 120.54504 * 359.97438 * 11 10 9 13 13 C 1.31750 * 120.69225 * 180.02562 * 12 11 10 14 14 N 1.31775 * 121.86115 * 359.97438 * 13 12 11 15 15 C 1.32594 * 121.03384 * 0.02562 * 14 13 12 16 16 C 1.38167 * 119.18934 * 0.02562 * 15 14 13 17 17 Cl 1.73603 * 120.84517 * 180.02562 * 16 15 14 18 18 H 0.97001 * 119.99950 * 0.02562 * 1 2 3 19 19 H 1.08996 * 109.47398 * 59.99316 * 9 7 2 20 20 H 1.08998 * 109.46843 * 299.99425 * 9 7 2 21 21 H 1.07994 * 119.06611 * 179.97438 * 13 12 11 22 22 H 1.08002 * 120.40614 * 179.72914 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 16 4.1148 -2.9006 -0.0001 11 6 5.8528 -2.6107 -0.0001 12 7 6.3311 -1.3693 -0.0006 13 6 7.6301 -1.1492 -0.0011 14 7 8.5029 -2.1364 -0.0007 15 6 8.1045 -3.4011 -0.0003 16 6 6.7516 -3.6813 -0.0008 17 17 6.1823 -5.3214 0.0004 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6808 0.8904 20 1 3.8751 -0.6798 -0.8895 21 1 7.9896 -0.1308 -0.0019 22 1 8.8287 -4.2023 -0.0044 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591184047.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:59 Heat of formation + Delta-G solvation = 14.741647 kcal Electronic energy + Delta-G solvation = -11224.437985 eV Core-core repulsion = 8930.900292 eV Total energy + Delta-G solvation = -2293.537693 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.998 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.92386 -37.81370 -35.29940 -34.89408 -32.80164 -31.52538 -26.17967 -25.62006 -24.43084 -19.81612 -19.01311 -18.80552 -17.32357 -16.83287 -16.31819 -16.10404 -15.17151 -14.77726 -14.73202 -14.36097 -13.33407 -12.80904 -12.73019 -12.57160 -12.43218 -12.28519 -12.16853 -11.84455 -11.26408 -10.91941 -10.65431 -10.34933 -8.84303 -8.41676 -6.52870 -0.47580 -0.21232 0.38438 0.87367 1.30533 1.34070 1.42068 1.49434 2.27804 2.49208 2.92210 3.08372 3.15689 3.40550 3.92074 4.41553 4.67035 4.70491 5.08651 5.26353 5.59097 5.98526 6.50575 6.82901 7.11600 8.73169 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.037517 B = 0.008258 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.148860 B = 3390.039945 C = 4121.045270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.029 3.971 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.247 1.247 7 C -0.540 4.540 8 H 0.046 0.954 9 C 0.031 3.969 10 S -0.027 6.027 11 C 0.150 3.850 12 N -0.542 5.542 13 C 0.311 3.689 14 N -0.526 5.526 15 C 0.188 3.812 16 C -0.146 4.146 17 Cl -0.021 7.021 18 H 0.274 0.726 19 H 0.049 0.951 20 H 0.047 0.953 21 H 0.233 0.767 22 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.525 -5.153 0.015 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.173 4.173 3 Si 0.768 3.232 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.170 1.170 7 C -0.578 4.578 8 H 0.064 0.936 9 C -0.118 4.118 10 S 0.216 5.784 11 C -0.106 4.106 12 N -0.261 5.261 13 C 0.021 3.979 14 N -0.242 5.242 15 C 0.021 3.979 16 C -0.187 4.187 17 Cl 0.008 6.992 18 H 0.083 0.917 19 H 0.067 0.933 20 H 0.065 0.935 21 H 0.249 0.751 22 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 16.857 -5.271 0.018 17.662 hybrid contribution -0.060 0.874 -0.020 0.876 sum 16.797 -4.397 -0.002 17.363 Atomic orbital electron populations 1.69992 1.08076 1.28885 1.50136 1.25769 0.95570 1.02924 0.92991 0.85710 0.79606 0.78177 0.79673 1.18754 1.20070 1.17020 1.20655 0.88941 0.94331 1.53918 0.93615 1.21375 0.98089 0.91324 1.00999 1.85978 0.90687 1.14840 1.86919 1.24122 1.00976 0.91293 0.94235 1.69032 1.18803 1.20420 1.17866 1.25704 0.83465 1.01026 0.87729 1.68693 1.39118 1.00015 1.16413 1.23713 0.91493 0.95389 0.87325 1.22380 0.96043 0.87969 1.12280 1.98383 1.89095 1.15094 1.96651 0.91664 0.93287 0.93473 0.75088 0.76737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.96 21.45 0.30 -56.29 14 2 C 0.03 1.64 5.47 84.66 0.46 2.10 14 3 Si 0.95 42.87 27.47 68.60 1.88 44.75 14 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 14 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 14 6 H -0.25 -10.57 6.54 99.48 0.65 -9.92 14 7 C -0.54 -30.78 9.68 25.60 0.25 -30.53 14 8 H 0.05 2.87 7.95 -2.91 -0.02 2.85 14 9 C 0.03 1.47 3.70 71.23 0.26 1.73 14 10 S -0.03 -1.11 21.05 -56.49 -1.19 -2.30 14 11 C 0.15 5.19 7.01 84.89 0.60 5.79 14 12 N -0.54 -18.30 9.31 -196.15 -1.83 -20.13 14 13 C 0.31 8.01 12.28 180.90 2.22 10.24 14 14 N -0.53 -12.57 10.43 -200.26 -2.09 -14.66 14 15 C 0.19 4.09 11.11 84.56 0.94 5.03 14 16 C -0.15 -4.03 6.38 22.63 0.14 -3.88 14 17 Cl -0.02 -0.52 28.03 -2.72 -0.08 -0.60 14 18 H 0.27 15.36 8.31 -92.71 -0.77 14.59 14 19 H 0.05 2.34 7.20 -2.40 -0.02 2.33 14 20 H 0.05 2.23 7.56 -2.40 -0.02 2.21 14 21 H 0.23 4.13 8.06 -2.91 -0.02 4.11 14 22 H 0.22 2.82 8.06 -2.91 -0.02 2.80 14 Total: -1.00 -64.95 233.77 3.07 -61.89 By element: Atomic # 1 Polarization: -4.33 SS G_CDS: 1.19 Total: -3.14 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 4.87 Total: -9.52 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -3.62 Total: -91.08 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.75 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -1.19 Total: -2.30 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.60 kcal Total: -64.95 3.07 -61.89 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591184047.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.629 kcal (2) G-P(sol) polarization free energy of solvation -64.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds