Wall clock time and date at job start Sun Mar 29 2020 22:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99570 * 2 1 4 4 H 1.48501 * 109.47188 * 270.00185 * 3 2 1 5 5 H 1.48497 * 109.47333 * 30.00378 * 3 2 1 6 6 H 1.48498 * 109.46747 * 150.00339 * 3 2 1 7 7 C 1.37872 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00572 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99645 * 179.97438 * 7 2 1 10 10 S 1.81400 * 109.47132 * 180.02562 * 9 7 2 11 11 C 1.81399 * 103.00172 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47147 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.47264 * 179.97438 * 12 11 10 14 14 C 1.42901 * 114.00134 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47091 * 179.97438 * 14 13 12 16 16 C 1.53782 * 113.61382 * 274.14037 * 15 14 13 17 17 C 1.53957 * 87.01833 * 220.04619 * 16 15 14 18 18 C 1.53775 * 87.11127 * 25.36197 * 17 16 15 19 19 H 0.96999 * 120.00174 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47338 * 60.00067 * 9 7 2 21 21 H 1.08998 * 109.47439 * 299.99672 * 9 7 2 22 22 H 1.09001 * 109.47190 * 59.99989 * 11 10 9 23 23 H 1.08992 * 109.47325 * 300.00052 * 11 10 9 24 24 H 1.09001 * 109.47289 * 59.99804 * 12 11 10 25 25 H 1.09004 * 109.47261 * 300.00060 * 12 11 10 26 26 H 1.08994 * 109.47036 * 300.00109 * 14 13 12 27 27 H 1.09002 * 109.46796 * 60.00253 * 14 13 12 28 28 H 1.09005 * 112.84842 * 45.33488 * 15 14 13 29 29 H 1.08995 * 113.61269 * 334.56495 * 16 15 14 30 30 H 1.08999 * 113.61463 * 105.47489 * 16 15 14 31 31 H 1.08996 * 113.54003 * 270.81243 * 17 16 15 32 32 H 1.09001 * 113.67013 * 139.93118 * 17 16 15 33 33 H 1.08999 * 113.61881 * 220.09083 * 18 17 16 34 34 H 1.09007 * 113.69347 * 89.19852 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 16 4.1163 -2.9042 -0.0025 11 6 5.9188 -2.6997 -0.0023 12 6 6.5881 -4.0755 -0.0027 13 8 8.0081 -3.9144 -0.0032 14 6 8.7327 -5.1461 -0.0030 15 6 10.2346 -4.8541 -0.0041 16 6 10.8189 -4.6374 -1.4100 17 6 12.0421 -5.4446 -0.9384 18 6 11.1078 -6.1170 0.0811 19 1 -0.4850 0.8400 0.0004 20 1 3.8753 -0.6803 0.8888 21 1 3.8746 -0.6800 -0.8911 22 1 6.2218 -2.1489 0.8882 23 1 6.2219 -2.1475 -0.8917 24 1 6.2851 -4.6267 -0.8929 25 1 6.2849 -4.6274 0.8870 26 1 8.4744 -5.7195 0.8871 27 1 8.4739 -5.7200 -0.8928 28 1 10.5158 -4.0798 0.7097 29 1 10.2500 -5.1281 -2.1997 30 1 11.0429 -3.5943 -1.6337 31 1 12.8184 -4.8312 -0.4810 32 1 12.4315 -6.1294 -1.6918 33 1 11.5644 -6.2669 1.0595 34 1 10.6174 -7.0134 -0.2988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591338776.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:33 Heat of formation + Delta-G solvation = -45.849217 kcal Electronic energy + Delta-G solvation = -13285.839306 eV Core-core repulsion = 10924.171564 eV Total energy + Delta-G solvation = -2361.667742 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.34009 -37.38930 -33.05283 -31.43758 -29.37181 -28.23539 -25.87166 -23.33854 -22.89079 -22.00865 -19.63783 -16.99489 -16.79079 -16.25461 -15.70654 -15.46844 -15.00127 -14.13875 -14.01762 -13.69454 -12.99906 -12.79172 -12.73013 -12.29399 -12.22915 -12.19434 -11.40890 -11.30959 -10.83442 -10.79788 -10.65494 -10.50637 -10.38282 -10.06598 -9.66943 -9.57946 -9.01806 -8.72462 -6.85802 -6.19178 -4.21603 2.29534 3.21284 3.28637 3.30237 3.63675 3.76772 4.30319 4.33444 4.40501 4.54598 4.66199 5.09156 5.10404 5.12072 5.15895 5.34455 5.36957 5.43544 5.45816 5.55836 5.60958 5.62250 5.77521 5.92336 5.97387 6.04073 6.21893 6.57091 6.67831 7.18719 7.40670 8.28938 8.83211 9.36326 10.92864 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.065261 B = 0.003763 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.945336 B = 7439.169637 C = 7739.464613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.080 3.920 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.084 0.916 9 C 0.051 3.949 10 S -0.263 6.263 11 C -0.100 4.100 12 C 0.084 3.916 13 O -0.388 6.388 14 C 0.072 3.928 15 C -0.109 4.109 16 C -0.134 4.134 17 C -0.143 4.143 18 C -0.134 4.134 19 H 0.268 0.732 20 H 0.036 0.964 21 H 0.032 0.968 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.569 -9.505 -0.700 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.125 4.125 3 Si 0.705 3.295 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.102 0.898 9 C -0.097 4.097 10 S -0.037 6.037 11 C -0.248 4.248 12 C 0.007 3.993 13 O -0.308 6.308 14 C -0.005 4.005 15 C -0.128 4.128 16 C -0.172 4.172 17 C -0.181 4.181 18 C -0.171 4.171 19 H 0.078 0.922 20 H 0.054 0.946 21 H 0.050 0.950 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.916 -10.142 -0.700 23.255 hybrid contribution 0.854 1.839 0.006 2.028 sum 21.769 -8.302 -0.694 23.309 Atomic orbital electron populations 1.69867 1.06142 1.27329 1.49523 1.24851 0.94767 0.98739 0.94111 0.86800 0.80319 0.83540 0.78854 1.19837 1.20751 1.19049 1.20474 0.86851 0.95362 1.52714 0.89775 1.21419 1.01021 0.87972 0.99246 1.86622 0.99457 1.19626 1.98028 1.23173 0.96968 0.99488 1.05203 1.22109 0.79975 0.96155 1.01081 1.87869 1.17634 1.29769 1.95487 1.22499 0.91284 0.86664 1.00058 1.22553 0.92530 0.98924 0.98769 1.22983 0.96880 1.00788 0.96529 1.22843 0.96804 0.99456 0.98968 1.22902 0.97366 0.96955 0.99882 0.92187 0.94562 0.95021 0.90155 0.90143 0.92562 0.92543 0.93321 0.93292 0.88440 0.90079 0.91270 0.90185 0.91420 0.91249 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -14.85 9.68 -34.44 -0.33 -15.19 16 8 H 0.08 2.65 7.96 -52.49 -0.42 2.24 16 9 C 0.05 1.26 4.77 36.01 0.17 1.43 16 10 S -0.26 -5.63 21.66 -107.50 -2.33 -7.96 16 11 C -0.10 -1.70 6.31 37.16 0.23 -1.47 16 12 C 0.08 1.23 5.95 37.16 0.22 1.45 16 13 O -0.39 -5.46 10.34 -35.23 -0.36 -5.82 16 14 C 0.07 0.78 5.76 37.16 0.21 0.99 16 15 C -0.11 -1.01 4.00 -89.81 -0.36 -1.37 16 16 C -0.13 -1.16 7.65 -25.83 -0.20 -1.36 16 17 C -0.14 -1.01 8.09 -25.83 -0.21 -1.22 16 18 C -0.13 -0.97 7.65 -25.92 -0.20 -1.17 16 19 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 20 H 0.04 0.88 7.20 -51.92 -0.37 0.50 16 21 H 0.03 0.75 7.57 -51.92 -0.39 0.36 16 22 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 23 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.49 7.87 -51.93 -0.41 0.08 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.69 7.92 -51.93 -0.41 0.28 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.55 8.10 -51.92 -0.42 0.13 16 LS Contribution 295.84 15.07 4.46 4.46 Total: -1.00 -30.11 295.84 -8.50 -38.61 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -5.82 Total: -3.75 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -0.55 Total: -15.72 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.77 Total: -26.29 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.36 Total: -5.82 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -2.33 Total: -7.96 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.11 -8.50 -38.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591338776.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.234 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds