Wall clock time and date at job start Sun Mar 29 2020 22:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99570 * 2 1 4 4 H 1.48501 * 109.47188 * 270.00185 * 3 2 1 5 5 H 1.48497 * 109.47333 * 30.00378 * 3 2 1 6 6 H 1.48498 * 109.46747 * 150.00339 * 3 2 1 7 7 C 1.37872 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00572 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99645 * 179.97438 * 7 2 1 10 10 S 1.81400 * 109.47132 * 180.02562 * 9 7 2 11 11 C 1.81399 * 103.00172 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47147 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.47264 * 179.97438 * 12 11 10 14 14 C 1.42901 * 114.00134 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47091 * 179.97438 * 14 13 12 16 16 C 1.53782 * 113.61382 * 274.14037 * 15 14 13 17 17 C 1.53957 * 87.01833 * 220.04619 * 16 15 14 18 18 C 1.53775 * 87.11127 * 25.36197 * 17 16 15 19 19 H 0.96999 * 120.00174 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47338 * 60.00067 * 9 7 2 21 21 H 1.08998 * 109.47439 * 299.99672 * 9 7 2 22 22 H 1.09001 * 109.47190 * 59.99989 * 11 10 9 23 23 H 1.08992 * 109.47325 * 300.00052 * 11 10 9 24 24 H 1.09001 * 109.47289 * 59.99804 * 12 11 10 25 25 H 1.09004 * 109.47261 * 300.00060 * 12 11 10 26 26 H 1.08994 * 109.47036 * 300.00109 * 14 13 12 27 27 H 1.09002 * 109.46796 * 60.00253 * 14 13 12 28 28 H 1.09005 * 112.84842 * 45.33488 * 15 14 13 29 29 H 1.08995 * 113.61269 * 334.56495 * 16 15 14 30 30 H 1.08999 * 113.61463 * 105.47489 * 16 15 14 31 31 H 1.08996 * 113.54003 * 270.81243 * 17 16 15 32 32 H 1.09001 * 113.67013 * 139.93118 * 17 16 15 33 33 H 1.08999 * 113.61881 * 220.09083 * 18 17 16 34 34 H 1.09007 * 113.69347 * 89.19852 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 16 4.1163 -2.9042 -0.0025 11 6 5.9188 -2.6997 -0.0023 12 6 6.5881 -4.0755 -0.0027 13 8 8.0081 -3.9144 -0.0032 14 6 8.7327 -5.1461 -0.0030 15 6 10.2346 -4.8541 -0.0041 16 6 10.8189 -4.6374 -1.4100 17 6 12.0421 -5.4446 -0.9384 18 6 11.1078 -6.1170 0.0811 19 1 -0.4850 0.8400 0.0004 20 1 3.8753 -0.6803 0.8888 21 1 3.8746 -0.6800 -0.8911 22 1 6.2218 -2.1489 0.8882 23 1 6.2219 -2.1475 -0.8917 24 1 6.2851 -4.6267 -0.8929 25 1 6.2849 -4.6274 0.8870 26 1 8.4744 -5.7195 0.8871 27 1 8.4739 -5.7200 -0.8928 28 1 10.5158 -4.0798 0.7097 29 1 10.2500 -5.1281 -2.1997 30 1 11.0429 -3.5943 -1.6337 31 1 12.8184 -4.8312 -0.4810 32 1 12.4315 -6.1294 -1.6918 33 1 11.5644 -6.2669 1.0595 34 1 10.6174 -7.0134 -0.2988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591338776.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:33 Heat of formation + Delta-G solvation = -63.114895 kcal Electronic energy + Delta-G solvation = -13286.588002 eV Core-core repulsion = 10924.171564 eV Total energy + Delta-G solvation = -2362.416438 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.07671 -38.34064 -35.22746 -32.62752 -31.47737 -29.08664 -26.47980 -25.07322 -23.63905 -23.61278 -20.28460 -19.10335 -17.92315 -17.27176 -17.08177 -16.51278 -16.10304 -15.90896 -15.18817 -15.02480 -14.56307 -14.44716 -14.12432 -13.32547 -13.25356 -13.12013 -12.69281 -12.40695 -12.32708 -12.23159 -12.04766 -11.78052 -11.43320 -11.20544 -11.15756 -10.90899 -10.77736 -10.57094 -8.58667 -8.39213 -6.49392 0.72241 1.33769 1.35361 1.46118 1.88819 2.28099 2.77699 2.93666 3.68277 3.76374 3.82246 3.87313 3.96729 4.08829 4.36780 4.39840 4.52477 4.57475 4.58991 4.68901 4.72438 4.74368 4.85537 4.87247 4.95937 5.09537 5.12631 5.29999 5.34171 5.58844 6.04920 6.18249 6.54574 7.13252 8.76665 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.065261 B = 0.003763 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.945336 B = 7439.169637 C = 7739.464613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.020 3.980 3 Si 0.954 3.046 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.532 4.532 8 H 0.038 0.962 9 C 0.052 3.948 10 S -0.287 6.287 11 C -0.084 4.084 12 C 0.091 3.909 13 O -0.402 6.402 14 C 0.066 3.934 15 C -0.115 4.115 16 C -0.140 4.140 17 C -0.137 4.137 18 C -0.126 4.126 19 H 0.273 0.727 20 H 0.043 0.957 21 H 0.042 0.958 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.172 -9.180 -0.723 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.180 4.180 3 Si 0.775 3.225 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.171 1.171 7 C -0.570 4.570 8 H 0.056 0.944 9 C -0.096 4.096 10 S -0.061 6.061 11 C -0.233 4.233 12 C 0.013 3.987 13 O -0.322 6.322 14 C -0.010 4.010 15 C -0.134 4.134 16 C -0.178 4.178 17 C -0.175 4.175 18 C -0.164 4.164 19 H 0.083 0.917 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.104 0.896 23 H 0.105 0.895 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 23.530 -9.839 -0.723 25.514 hybrid contribution 0.060 1.615 0.009 1.617 sum 23.590 -8.223 -0.713 24.993 Atomic orbital electron populations 1.70016 1.08240 1.28839 1.50665 1.25887 0.95684 1.03182 0.93220 0.85617 0.79401 0.77775 0.79669 1.18545 1.20064 1.17054 1.20660 0.89311 0.93971 1.53096 0.94389 1.21221 0.98266 0.90318 0.99813 1.86615 1.03874 1.17525 1.98104 1.23153 0.93005 1.01325 1.05793 1.21944 0.80566 0.94510 1.01636 1.87839 1.17007 1.31720 1.95624 1.22743 0.91776 0.85677 1.00852 1.22613 0.91734 1.00016 0.99022 1.23029 0.97842 1.00679 0.96228 1.22834 0.96330 0.99288 0.99027 1.22900 0.96736 0.96254 1.00489 0.91739 0.93854 0.93975 0.89571 0.89514 0.92064 0.92042 0.92498 0.92476 0.89204 0.90078 0.92046 0.89680 0.90416 0.90417 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.25 13.96 21.45 0.30 -57.95 16 2 C 0.02 1.19 5.47 84.65 0.46 1.65 16 3 Si 0.95 42.94 27.47 68.60 1.88 44.83 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 7 C -0.53 -31.30 9.68 25.60 0.25 -31.05 16 8 H 0.04 2.51 7.96 -2.91 -0.02 2.49 16 9 C 0.05 2.51 4.77 71.24 0.34 2.85 16 10 S -0.29 -12.13 21.66 -56.49 -1.22 -13.35 16 11 C -0.08 -2.71 6.31 71.98 0.45 -2.26 16 12 C 0.09 2.47 5.95 71.98 0.43 2.90 16 13 O -0.40 -10.51 10.34 -148.98 -1.54 -12.05 16 14 C 0.07 1.29 5.76 71.98 0.41 1.71 16 15 C -0.12 -1.93 4.00 -10.27 -0.04 -1.97 16 16 C -0.14 -2.20 7.65 31.18 0.24 -1.96 16 17 C -0.14 -1.64 8.09 31.18 0.25 -1.38 16 18 C -0.13 -1.54 7.65 31.12 0.24 -1.30 16 19 H 0.27 15.61 8.31 -92.71 -0.77 14.83 16 20 H 0.04 2.02 7.20 -2.39 -0.02 2.00 16 21 H 0.04 1.94 7.57 -2.39 -0.02 1.92 16 22 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 23 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 25 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.02 7.87 -2.39 -0.02 1.00 16 28 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.08 1.26 7.92 -2.39 -0.02 1.24 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.96 8.10 -2.38 -0.02 0.95 16 Total: -1.00 -65.18 295.84 3.44 -61.74 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.98 Total: 7.62 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 3.03 Total: -30.82 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.30 Total: -57.95 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -1.54 Total: -12.05 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.83 kcal Atomic # 16 Polarization: -12.13 SS G_CDS: -1.22 Total: -13.35 kcal Total: -65.18 3.44 -61.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591338776.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.378 kcal (2) G-P(sol) polarization free energy of solvation -65.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds