Wall clock time and date at job start Sun Mar 29 2020 21:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.52109 * 29.87177 * 4 3 2 6 6 C 1.53090 * 109.52207 * 269.68923 * 4 3 2 7 7 O 1.42904 * 109.41864 * 182.48416 * 6 4 3 8 8 C 1.42908 * 114.09534 * 61.15311 * 7 6 4 9 9 C 1.53098 * 109.41350 * 298.84524 * 8 7 6 10 10 C 1.53173 * 109.52414 * 150.00047 * 4 3 2 11 11 H 1.08993 * 109.54465 * 56.93122 * 10 4 3 12 12 N 1.46903 * 109.54341 * 296.75333 * 10 4 3 13 13 C 1.46901 * 111.00156 * 155.00332 * 12 10 4 14 14 C 1.50699 * 109.47001 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00205 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99386 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99594 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00230 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46928 * 90.00550 * 18 16 14 20 20 H 1.48506 * 109.47332 * 210.00089 * 18 16 14 21 21 H 1.48497 * 109.47385 * 330.00392 * 18 16 14 22 22 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 27 27 H 1.09000 * 109.47831 * 302.46450 * 6 4 3 28 28 H 1.09004 * 109.48237 * 62.49972 * 6 4 3 29 29 H 1.09001 * 109.47620 * 178.86663 * 8 7 6 30 30 H 1.08997 * 109.47871 * 58.82948 * 8 7 6 31 31 H 1.09000 * 109.52373 * 297.70184 * 9 8 7 32 32 H 1.09001 * 109.56957 * 177.54637 * 9 8 7 33 33 H 1.00907 * 110.99857 * 278.95211 * 12 10 4 34 34 H 1.09000 * 109.46559 * 300.00075 * 13 12 10 35 35 H 1.08996 * 109.47367 * 59.99394 * 13 12 10 36 36 H 0.97000 * 120.00068 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8641 0.6009 -0.5126 6 6 3.9408 1.5082 1.4421 7 8 5.3596 1.6792 1.4390 8 6 5.8001 2.8891 0.8190 9 6 5.3648 2.8965 -0.6488 10 6 3.8421 2.7471 -0.7224 11 1 3.3669 3.6023 -0.2421 12 7 3.4226 2.6774 -2.1285 13 6 3.2441 4.0223 -2.6920 14 6 2.8141 3.9105 -4.1320 15 1 2.6867 2.9379 -4.5836 16 6 2.5835 5.0502 -4.8729 17 7 2.2087 4.9528 -6.1298 18 14 2.8032 6.7326 -4.0915 19 1 4.2029 7.1894 -4.2854 20 1 1.8741 7.6998 -4.7292 21 1 2.5074 6.6462 -2.6388 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.4751 2.3438 1.9646 28 1 3.6881 0.5765 1.9482 29 1 6.8868 2.9521 0.8762 30 1 5.3587 3.7427 1.3334 31 1 5.8380 2.0664 -1.1732 32 1 5.6614 3.8371 -1.1129 33 1 4.0789 2.1404 -2.6755 34 1 2.4804 4.5550 -2.1254 35 1 4.1858 4.5681 -2.6348 36 1 2.0461 5.7546 -6.6509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591760098.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:38 Heat of formation + Delta-G solvation = -97.078470 kcal Electronic energy + Delta-G solvation = -16717.852911 eV Core-core repulsion = 14008.929493 eV Total energy + Delta-G solvation = -2708.923418 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.68768 -37.21662 -35.66328 -32.73612 -31.48404 -30.82742 -29.33443 -26.92333 -23.73256 -23.21916 -22.41143 -21.07350 -20.21659 -17.14294 -16.63487 -16.37792 -15.68941 -15.29320 -14.86436 -14.71026 -14.05595 -13.81575 -13.43956 -12.92481 -12.80579 -12.43463 -12.28114 -12.09230 -11.91231 -11.45325 -11.10929 -11.07422 -10.97585 -10.75571 -10.58344 -10.12557 -9.94461 -9.79661 -9.30006 -8.96231 -8.59837 -7.44326 -6.05528 -4.03072 3.27525 3.35572 3.38610 3.61981 4.08202 4.42029 4.70552 4.89593 4.97533 5.06448 5.21238 5.26552 5.27471 5.32938 5.38375 5.50437 5.58323 5.64522 5.72511 5.80056 5.88377 6.00616 6.07205 6.13360 6.26137 6.34098 6.77488 7.00913 7.06471 7.54581 7.62157 7.88709 8.33009 8.65315 9.02709 9.56453 11.07896 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.023203 B = 0.007787 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.429551 B = 3594.944337 C = 4457.530869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.074 3.926 5 H 0.065 0.935 6 C 0.040 3.960 7 O -0.381 6.381 8 C 0.062 3.938 9 C -0.184 4.184 10 C 0.086 3.914 11 H 0.079 0.921 12 N -0.664 5.664 13 C 0.167 3.833 14 C -0.514 4.514 15 H 0.079 0.921 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.267 1.267 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.333 0.667 34 H 0.027 0.973 35 H -0.022 1.022 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -6.955 15.130 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.277 6.277 4 C 0.014 3.986 5 H 0.083 0.917 6 C -0.037 4.037 7 O -0.300 6.300 8 C -0.015 4.015 9 C -0.224 4.224 10 C -0.026 4.026 11 H 0.097 0.903 12 N -0.292 5.292 13 C 0.039 3.961 14 C -0.552 4.552 15 H 0.097 0.903 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.192 1.192 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.151 0.849 34 H 0.045 0.955 35 H -0.004 1.004 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.917 -6.886 15.169 16.913 hybrid contribution 0.988 1.241 -0.008 1.586 sum 3.905 -5.646 15.161 16.643 Atomic orbital electron populations 1.21716 0.93994 1.01705 1.03306 1.22452 0.95535 0.84451 0.99387 1.88005 1.19556 1.25460 1.94677 1.22695 0.82194 0.99156 0.94536 0.91655 1.23102 0.81395 1.02197 0.97027 1.87902 1.21401 1.41465 1.79213 1.22594 0.99838 0.86860 0.92229 1.23024 0.98086 1.03653 0.97614 1.21681 0.91582 0.96593 0.92726 0.90269 1.60485 1.51179 1.18134 0.99420 1.20019 0.94325 0.85558 0.96188 1.21053 1.45592 0.95129 0.93446 0.90341 1.24903 0.94799 0.98953 0.94696 1.69902 1.47153 1.29114 1.07806 0.86826 0.78137 0.84480 0.80075 1.20394 1.21125 1.19155 0.92286 0.91603 0.91287 0.94385 0.93265 0.92449 0.89087 0.88866 0.93046 0.90781 0.90120 0.84889 0.95523 1.00421 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 37.16 0.38 -1.41 16 2 C 0.06 0.78 6.47 37.16 0.24 1.02 16 3 O -0.36 -5.96 9.92 -35.23 -0.35 -6.31 16 4 C 0.07 1.12 2.45 -26.59 -0.07 1.06 16 5 H 0.07 0.99 7.79 -51.93 -0.40 0.58 16 6 C 0.04 0.53 6.47 37.20 0.24 0.77 16 7 O -0.38 -5.22 10.77 -35.23 -0.38 -5.60 16 8 C 0.06 0.77 6.84 37.21 0.25 1.03 16 9 C -0.18 -2.66 5.40 -26.59 -0.14 -2.81 16 10 C 0.09 1.47 2.23 -67.53 -0.15 1.32 16 11 H 0.08 1.45 7.80 -51.93 -0.41 1.05 16 12 N -0.66 -13.96 6.17 -107.80 -0.67 -14.63 16 13 C 0.17 4.10 4.31 -4.98 -0.02 4.08 16 14 C -0.51 -14.89 9.87 -34.44 -0.34 -15.23 16 15 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 18 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.42 7.96 -51.93 -0.41 0.01 16 26 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.03 7.96 -51.93 -0.41 0.62 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.08 1.20 7.57 -51.93 -0.39 0.81 16 33 H 0.33 6.77 8.43 -39.29 -0.33 6.44 16 34 H 0.03 0.69 7.11 -51.93 -0.37 0.32 16 35 H -0.02 -0.52 6.97 -51.93 -0.36 -0.88 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 291.80 15.07 4.40 4.40 Total: -1.00 -31.64 291.80 -6.65 -38.29 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.06 Total: 2.15 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 0.30 Total: -8.27 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.11 Total: -41.80 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.73 Total: -11.91 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.64 -6.65 -38.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591760098.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.787 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds