Wall clock time and date at job start Sun Mar 29 2020 21:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.52109 * 29.87177 * 4 3 2 6 6 C 1.53090 * 109.52207 * 269.68923 * 4 3 2 7 7 O 1.42904 * 109.41864 * 182.48416 * 6 4 3 8 8 C 1.42908 * 114.09534 * 61.15311 * 7 6 4 9 9 C 1.53098 * 109.41350 * 298.84524 * 8 7 6 10 10 C 1.53173 * 109.52414 * 150.00047 * 4 3 2 11 11 H 1.08993 * 109.54465 * 56.93122 * 10 4 3 12 12 N 1.46903 * 109.54341 * 296.75333 * 10 4 3 13 13 C 1.46901 * 111.00156 * 155.00332 * 12 10 4 14 14 C 1.50699 * 109.47001 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00205 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99386 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99594 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00230 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46928 * 90.00550 * 18 16 14 20 20 H 1.48506 * 109.47332 * 210.00089 * 18 16 14 21 21 H 1.48497 * 109.47385 * 330.00392 * 18 16 14 22 22 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 27 27 H 1.09000 * 109.47831 * 302.46450 * 6 4 3 28 28 H 1.09004 * 109.48237 * 62.49972 * 6 4 3 29 29 H 1.09001 * 109.47620 * 178.86663 * 8 7 6 30 30 H 1.08997 * 109.47871 * 58.82948 * 8 7 6 31 31 H 1.09000 * 109.52373 * 297.70184 * 9 8 7 32 32 H 1.09001 * 109.56957 * 177.54637 * 9 8 7 33 33 H 1.00907 * 110.99857 * 278.95211 * 12 10 4 34 34 H 1.09000 * 109.46559 * 300.00075 * 13 12 10 35 35 H 1.08996 * 109.47367 * 59.99394 * 13 12 10 36 36 H 0.97000 * 120.00068 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8641 0.6009 -0.5126 6 6 3.9408 1.5082 1.4421 7 8 5.3596 1.6792 1.4390 8 6 5.8001 2.8891 0.8190 9 6 5.3648 2.8965 -0.6488 10 6 3.8421 2.7471 -0.7224 11 1 3.3669 3.6023 -0.2421 12 7 3.4226 2.6774 -2.1285 13 6 3.2441 4.0223 -2.6920 14 6 2.8141 3.9105 -4.1320 15 1 2.6867 2.9379 -4.5836 16 6 2.5835 5.0502 -4.8729 17 7 2.2087 4.9528 -6.1298 18 14 2.8032 6.7326 -4.0915 19 1 4.2029 7.1894 -4.2854 20 1 1.8741 7.6998 -4.7292 21 1 2.5074 6.6462 -2.6388 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.4751 2.3438 1.9646 28 1 3.6881 0.5765 1.9482 29 1 6.8868 2.9521 0.8762 30 1 5.3587 3.7427 1.3334 31 1 5.8380 2.0664 -1.1732 32 1 5.6614 3.8371 -1.1129 33 1 4.0789 2.1404 -2.6755 34 1 2.4804 4.5550 -2.1254 35 1 4.1858 4.5681 -2.6348 36 1 2.0461 5.7546 -6.6509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591760098.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:37 Heat of formation + Delta-G solvation = -121.380310 kcal Electronic energy + Delta-G solvation = -16718.906718 eV Core-core repulsion = 14008.929493 eV Total energy + Delta-G solvation = -2709.977225 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.84646 -38.33635 -37.21640 -34.78624 -32.71402 -32.22869 -30.48875 -28.76048 -25.09763 -24.34545 -23.53502 -22.95098 -21.47009 -19.05284 -18.03275 -17.45340 -16.94278 -16.68347 -16.22639 -16.01887 -15.58726 -15.31719 -14.85372 -14.48635 -14.18924 -13.91602 -13.82634 -13.32044 -13.07479 -12.80412 -12.62729 -12.47343 -12.28014 -12.12177 -11.96396 -11.84375 -11.57374 -11.28490 -10.99392 -10.83443 -10.13644 -9.10364 -8.32250 -6.36630 1.31411 1.34789 1.45867 2.31917 2.56259 3.01525 3.03039 3.32105 3.74385 3.87198 3.97099 4.09674 4.17840 4.22664 4.37651 4.39073 4.52441 4.54270 4.65200 4.74491 4.75945 4.83566 4.90199 4.96734 5.08247 5.09060 5.11585 5.31272 5.50461 5.92789 6.04088 6.42707 6.53775 6.63501 6.74454 7.28136 8.84677 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.023203 B = 0.007787 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.429551 B = 3594.944337 C = 4457.530869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.387 6.387 4 C 0.076 3.924 5 H 0.064 0.936 6 C 0.048 3.952 7 O -0.387 6.387 8 C 0.064 3.936 9 C -0.178 4.178 10 C 0.081 3.919 11 H 0.067 0.933 12 N -0.676 5.676 13 C 0.182 3.818 14 C -0.528 4.528 15 H 0.035 0.965 16 C 0.008 3.992 17 N -0.947 5.947 18 Si 0.951 3.049 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.253 1.253 22 H 0.064 0.936 23 H 0.092 0.908 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.335 0.665 34 H 0.017 0.983 35 H -0.010 1.010 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.646 -6.510 17.523 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 O -0.307 6.307 4 C 0.017 3.983 5 H 0.082 0.918 6 C -0.030 4.030 7 O -0.306 6.306 8 C -0.013 4.013 9 C -0.217 4.217 10 C -0.029 4.029 11 H 0.085 0.915 12 N -0.305 5.305 13 C 0.053 3.947 14 C -0.566 4.566 15 H 0.053 0.947 16 C -0.190 4.190 17 N -0.588 5.588 18 Si 0.774 3.226 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.177 1.177 22 H 0.083 0.917 23 H 0.111 0.889 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.035 0.965 35 H 0.007 0.993 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.909 -6.465 17.585 19.139 hybrid contribution 0.645 0.982 -0.799 1.421 sum 4.554 -5.482 16.786 18.237 Atomic orbital electron populations 1.21736 0.93262 1.03195 1.02259 1.22663 0.96211 0.83232 1.00345 1.87967 1.20236 1.27554 1.94931 1.22691 0.81915 0.97789 0.95925 0.91819 1.23082 0.81149 1.03507 0.95254 1.87908 1.21526 1.42036 1.79092 1.22698 1.01398 0.86828 0.90358 1.22935 0.95746 1.03506 0.99539 1.21808 0.93573 0.97466 0.90082 0.91469 1.60365 1.52375 1.16284 1.01523 1.19702 0.94155 0.87523 0.93315 1.21325 1.45864 0.93564 0.95842 0.94660 1.25886 0.94215 1.03744 0.95118 1.70055 1.48416 1.30681 1.09598 0.85657 0.78895 0.78447 0.79572 1.18688 1.20550 1.17715 0.91730 0.88883 0.93852 0.91543 0.94067 0.92107 0.86967 0.86359 0.92132 0.90591 0.90525 0.84768 0.96456 0.99279 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 10.28 71.98 0.74 -2.64 16 2 C 0.05 1.31 6.47 71.98 0.47 1.77 16 3 O -0.39 -12.60 9.92 -148.98 -1.48 -14.08 16 4 C 0.08 2.22 2.45 30.68 0.08 2.30 16 5 H 0.06 1.86 7.79 -2.38 -0.02 1.84 16 6 C 0.05 1.12 6.47 72.01 0.47 1.59 16 7 O -0.39 -9.40 10.77 -148.98 -1.60 -11.00 16 8 C 0.06 1.40 6.84 72.01 0.49 1.89 16 9 C -0.18 -4.82 5.40 30.69 0.17 -4.65 16 10 C 0.08 2.73 2.23 45.03 0.10 2.83 16 11 H 0.07 2.40 7.80 -2.39 -0.02 2.38 16 12 N -0.68 -28.71 6.17 -494.98 -3.05 -31.77 16 13 C 0.18 8.93 4.31 85.56 0.37 9.30 16 14 C -0.53 -31.43 9.87 25.60 0.25 -31.18 16 15 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 16 C 0.01 0.47 5.47 84.65 0.46 0.93 16 17 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 18 Si 0.95 44.75 27.47 68.60 1.88 46.63 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 22 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.07 1.30 7.96 -2.39 -0.02 1.28 16 26 H 0.04 1.09 8.09 -2.39 -0.02 1.07 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.11 2.17 7.96 -2.39 -0.02 2.15 16 29 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 32 H 0.08 2.14 7.57 -2.39 -0.02 2.12 16 33 H 0.33 13.86 8.43 -89.69 -0.76 13.10 16 34 H 0.02 0.89 7.11 -2.39 -0.02 0.87 16 35 H -0.01 -0.48 6.97 -2.39 -0.02 -0.50 16 36 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -69.14 291.80 -0.13 -69.27 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.23 Total: 18.63 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 3.59 Total: -17.86 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -2.76 Total: -91.59 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -3.08 Total: -25.08 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -69.14 -0.13 -69.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591760098.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.114 kcal (2) G-P(sol) polarization free energy of solvation -69.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds