Wall clock time and date at job start Sun Mar 29 2020 21:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47472 * 2 1 4 4 C 1.42900 * 114.00334 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.57162 * 330.16760 * 4 3 2 6 6 C 1.53094 * 109.52043 * 90.31707 * 4 3 2 7 7 O 1.42898 * 109.41211 * 177.51618 * 6 4 3 8 8 C 1.42897 * 114.10001 * 298.84343 * 7 6 4 9 9 C 1.53089 * 109.41656 * 61.16248 * 8 7 6 10 10 C 1.53175 * 109.52726 * 210.00846 * 4 3 2 11 11 H 1.09004 * 109.53853 * 302.98240 * 10 4 3 12 12 N 1.46901 * 109.54266 * 63.24374 * 10 4 3 13 13 C 1.46907 * 110.99668 * 204.55708 * 12 10 4 14 14 C 1.50696 * 109.46662 * 180.02562 * 13 12 10 15 15 H 1.07996 * 120.00495 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99683 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00235 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00000 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47477 * 89.99746 * 18 16 14 20 20 H 1.48498 * 109.47185 * 209.99872 * 18 16 14 21 21 H 1.48500 * 109.46960 * 329.99533 * 18 16 14 22 22 H 1.08989 * 109.47377 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46598 * 299.99727 * 1 2 3 24 24 H 1.08999 * 109.46654 * 59.99198 * 1 2 3 25 25 H 1.09007 * 109.46961 * 240.00827 * 2 1 3 26 26 H 1.09001 * 109.47163 * 120.00760 * 2 1 3 27 27 H 1.09006 * 109.47665 * 57.53310 * 6 4 3 28 28 H 1.09002 * 109.48937 * 297.50531 * 6 4 3 29 29 H 1.09002 * 109.48425 * 301.17758 * 8 7 6 30 30 H 1.09002 * 109.48369 * 181.14801 * 8 7 6 31 31 H 1.08997 * 109.52675 * 182.48845 * 9 8 7 32 32 H 1.08994 * 109.57561 * 62.32552 * 9 8 7 33 33 H 1.00899 * 110.99953 * 80.61020 * 12 10 4 34 34 H 1.09001 * 109.47253 * 300.00510 * 13 12 10 35 35 H 1.08997 * 109.46688 * 60.00647 * 13 12 10 36 36 H 0.97000 * 119.99915 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.8651 0.6008 0.5118 6 6 3.9409 1.5082 -1.4421 7 8 5.3596 1.6791 -1.4390 8 6 5.8002 2.8888 -0.8189 9 6 5.3651 2.8961 0.6488 10 6 3.8424 2.7468 0.7226 11 1 3.3683 3.6023 0.2414 12 7 3.4229 2.6770 2.1287 13 6 3.2546 4.0219 2.6953 14 6 2.8255 3.9100 4.1355 15 1 2.6917 2.9373 4.5852 16 6 2.6039 5.0497 4.8792 17 7 2.7674 6.2343 4.3319 18 14 2.0727 4.9111 6.6648 19 1 3.2738 4.8748 7.5372 20 1 1.2350 6.0833 7.0244 21 1 1.2869 3.6651 6.8521 22 1 -0.3633 -1.0275 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3632 0.5140 -0.8899 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5140 0.8899 27 1 3.4752 2.3439 -1.9645 28 1 3.6881 0.5766 -1.9485 29 1 5.3589 3.7426 -1.3331 30 1 6.8869 2.9519 -0.8762 31 1 5.6616 3.8372 1.1121 32 1 5.8382 2.0666 1.1741 33 1 4.0753 2.1339 2.6741 34 1 4.2004 4.5608 2.6390 35 1 2.4947 4.5616 2.1302 36 1 2.6118 7.0360 4.8552 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591760099.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:39 Heat of formation + Delta-G solvation = -101.476344 kcal Electronic energy + Delta-G solvation = -16661.294774 eV Core-core repulsion = 13952.180650 eV Total energy + Delta-G solvation = -2709.114124 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.58976 -37.15252 -35.49504 -32.77717 -31.41806 -30.57437 -29.21939 -26.42688 -23.71024 -23.14483 -22.38377 -21.32396 -20.11063 -17.00454 -16.34460 -16.28485 -15.55260 -15.21128 -14.77571 -14.67611 -14.07415 -13.81859 -13.25746 -12.91991 -12.54061 -12.25157 -12.17880 -11.96775 -11.61417 -11.28630 -11.01976 -10.96368 -10.89543 -10.73109 -10.61193 -10.21295 -9.88221 -9.83589 -9.22726 -8.86026 -8.47487 -7.23722 -6.02020 -4.03534 3.32217 3.38312 3.43201 3.69517 4.15732 4.43496 4.85328 4.98315 5.09511 5.17141 5.24792 5.34007 5.35954 5.41838 5.44033 5.53133 5.69334 5.74330 5.81431 5.85853 6.01415 6.09307 6.10996 6.27538 6.29770 6.45738 7.13829 7.25799 7.43380 7.62453 7.79753 8.13996 8.40981 8.62329 9.05510 9.61090 11.09093 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.024225 B = 0.007120 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.536743 B = 3931.666997 C = 4845.805119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.357 6.357 4 C 0.073 3.927 5 H 0.063 0.937 6 C 0.041 3.959 7 O -0.382 6.382 8 C 0.062 3.938 9 C -0.182 4.182 10 C 0.089 3.911 11 H 0.079 0.921 12 N -0.674 5.674 13 C 0.197 3.803 14 C -0.512 4.512 15 H 0.061 0.939 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.326 0.674 34 H -0.014 1.014 35 H 0.028 0.972 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.274 -9.876 -10.548 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.276 6.276 4 C 0.014 3.986 5 H 0.081 0.919 6 C -0.037 4.037 7 O -0.301 6.301 8 C -0.015 4.015 9 C -0.222 4.222 10 C -0.023 4.023 11 H 0.098 0.902 12 N -0.302 5.302 13 C 0.070 3.930 14 C -0.551 4.551 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.143 0.857 34 H 0.003 0.997 35 H 0.046 0.954 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.558 -9.713 -10.711 14.543 hybrid contribution 0.630 0.348 1.231 1.426 sum 2.188 -9.365 -9.480 13.504 Atomic orbital electron populations 1.21712 0.94066 1.01609 1.03306 1.22440 0.95480 0.84621 0.99296 1.88016 1.19689 1.25241 1.94668 1.22724 0.82029 0.99301 0.94543 0.91871 1.23095 0.81450 1.02094 0.97082 1.87886 1.21371 1.41578 1.79267 1.22599 0.99748 0.86796 0.92392 1.23001 0.98188 1.03610 0.97397 1.21629 0.91477 0.96279 0.92910 0.90239 1.60663 1.50987 1.19151 0.99400 1.19564 0.95210 0.83485 0.94708 1.21181 1.45544 0.92758 0.95614 0.92042 1.24982 0.95675 0.95243 0.98677 1.69961 1.49803 0.97361 1.36669 0.86491 0.78534 0.77642 0.84701 1.20770 1.21234 1.19793 0.91682 0.91354 0.92251 0.94429 0.93400 0.92438 0.89238 0.92982 0.88960 0.89950 0.91109 0.85681 0.99659 0.95380 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 37.16 0.38 -1.43 16 2 C 0.06 0.79 6.47 37.16 0.24 1.03 16 3 O -0.36 -6.14 9.92 -35.23 -0.35 -6.49 16 4 C 0.07 1.17 2.45 -26.59 -0.07 1.11 16 5 H 0.06 0.99 7.79 -51.93 -0.40 0.59 16 6 C 0.04 0.56 6.47 37.21 0.24 0.80 16 7 O -0.38 -5.51 10.76 -35.23 -0.38 -5.89 16 8 C 0.06 0.83 6.84 37.20 0.25 1.08 16 9 C -0.18 -2.84 5.39 -26.59 -0.14 -2.98 16 10 C 0.09 1.62 2.23 -67.53 -0.15 1.47 16 11 H 0.08 1.58 7.81 -51.93 -0.41 1.17 16 12 N -0.67 -14.73 6.17 -107.79 -0.67 -15.40 16 13 C 0.20 5.21 5.24 -4.97 -0.03 5.18 16 14 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 15 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 18 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.43 7.96 -51.93 -0.41 0.02 16 26 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.07 7.96 -51.93 -0.41 0.66 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.36 7.55 -51.93 -0.39 0.97 16 32 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.33 6.81 8.44 -39.29 -0.33 6.48 16 34 H -0.01 -0.39 7.51 -51.93 -0.39 -0.78 16 35 H 0.03 0.82 8.06 -51.93 -0.42 0.40 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 295.36 15.07 4.45 4.45 Total: -1.00 -31.04 295.36 -7.00 -38.05 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.09 Total: 1.97 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 0.31 Total: -7.27 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.07 Total: -41.72 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.73 Total: -12.38 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.04 -7.00 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591760099.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.429 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds