Wall clock time and date at job start Sun Mar 29 2020 21:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47472 * 2 1 4 4 C 1.42900 * 114.00334 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.57162 * 330.16760 * 4 3 2 6 6 C 1.53094 * 109.52043 * 90.31707 * 4 3 2 7 7 O 1.42898 * 109.41211 * 177.51618 * 6 4 3 8 8 C 1.42897 * 114.10001 * 298.84343 * 7 6 4 9 9 C 1.53089 * 109.41656 * 61.16248 * 8 7 6 10 10 C 1.53175 * 109.52726 * 210.00846 * 4 3 2 11 11 H 1.09004 * 109.53853 * 302.98240 * 10 4 3 12 12 N 1.46901 * 109.54266 * 63.24374 * 10 4 3 13 13 C 1.46907 * 110.99668 * 204.55708 * 12 10 4 14 14 C 1.50696 * 109.46662 * 180.02562 * 13 12 10 15 15 H 1.07996 * 120.00495 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99683 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00235 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00000 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47477 * 89.99746 * 18 16 14 20 20 H 1.48498 * 109.47185 * 209.99872 * 18 16 14 21 21 H 1.48500 * 109.46960 * 329.99533 * 18 16 14 22 22 H 1.08989 * 109.47377 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46598 * 299.99727 * 1 2 3 24 24 H 1.08999 * 109.46654 * 59.99198 * 1 2 3 25 25 H 1.09007 * 109.46961 * 240.00827 * 2 1 3 26 26 H 1.09001 * 109.47163 * 120.00760 * 2 1 3 27 27 H 1.09006 * 109.47665 * 57.53310 * 6 4 3 28 28 H 1.09002 * 109.48937 * 297.50531 * 6 4 3 29 29 H 1.09002 * 109.48425 * 301.17758 * 8 7 6 30 30 H 1.09002 * 109.48369 * 181.14801 * 8 7 6 31 31 H 1.08997 * 109.52675 * 182.48845 * 9 8 7 32 32 H 1.08994 * 109.57561 * 62.32552 * 9 8 7 33 33 H 1.00899 * 110.99953 * 80.61020 * 12 10 4 34 34 H 1.09001 * 109.47253 * 300.00510 * 13 12 10 35 35 H 1.08997 * 109.46688 * 60.00647 * 13 12 10 36 36 H 0.97000 * 119.99915 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.8651 0.6008 0.5118 6 6 3.9409 1.5082 -1.4421 7 8 5.3596 1.6791 -1.4390 8 6 5.8002 2.8888 -0.8189 9 6 5.3651 2.8961 0.6488 10 6 3.8424 2.7468 0.7226 11 1 3.3683 3.6023 0.2414 12 7 3.4229 2.6770 2.1287 13 6 3.2546 4.0219 2.6953 14 6 2.8255 3.9100 4.1355 15 1 2.6917 2.9373 4.5852 16 6 2.6039 5.0497 4.8792 17 7 2.7674 6.2343 4.3319 18 14 2.0727 4.9111 6.6648 19 1 3.2738 4.8748 7.5372 20 1 1.2350 6.0833 7.0244 21 1 1.2869 3.6651 6.8521 22 1 -0.3633 -1.0275 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3632 0.5140 -0.8899 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5140 0.8899 27 1 3.4752 2.3439 -1.9645 28 1 3.6881 0.5766 -1.9485 29 1 5.3589 3.7426 -1.3331 30 1 6.8869 2.9519 -0.8762 31 1 5.6616 3.8372 1.1121 32 1 5.8382 2.0666 1.1741 33 1 4.0753 2.1339 2.6741 34 1 4.2004 4.5608 2.6390 35 1 2.4947 4.5616 2.1302 36 1 2.6118 7.0360 4.8552 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591760099.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:39 Heat of formation + Delta-G solvation = -124.519492 kcal Electronic energy + Delta-G solvation = -16662.294000 eV Core-core repulsion = 13952.180650 eV Total energy + Delta-G solvation = -2710.113350 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.84099 -38.33588 -37.15751 -34.81703 -32.60208 -32.11065 -30.43822 -28.36953 -25.24056 -24.36638 -23.60642 -23.14594 -21.47035 -18.72347 -17.94928 -17.45457 -16.87285 -16.79151 -16.25626 -15.99900 -15.58523 -15.29691 -14.67085 -14.44219 -14.03015 -13.86878 -13.54411 -13.31571 -13.06259 -12.78920 -12.68170 -12.49264 -12.27491 -12.17275 -12.08906 -11.94790 -11.49849 -11.20316 -11.00061 -10.67462 -10.13058 -9.05826 -8.23786 -6.35000 1.39275 1.41413 1.53136 2.38578 2.56415 3.02698 3.09248 3.39229 3.74862 3.87947 3.97198 4.10019 4.17589 4.23590 4.38954 4.39909 4.53218 4.54564 4.66308 4.75260 4.83640 4.88488 4.97752 5.07164 5.09607 5.11823 5.28114 5.32225 5.59741 6.00374 6.02922 6.42483 6.45363 6.70888 6.87946 7.35781 8.87734 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.024225 B = 0.007120 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.536743 B = 3931.666997 C = 4845.805119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.389 6.389 4 C 0.079 3.921 5 H 0.068 0.932 6 C 0.046 3.954 7 O -0.384 6.384 8 C 0.066 3.934 9 C -0.175 4.175 10 C 0.083 3.917 11 H 0.054 0.946 12 N -0.676 5.676 13 C 0.216 3.784 14 C -0.536 4.536 15 H 0.062 0.938 16 C 0.001 3.999 17 N -0.934 5.934 18 Si 0.973 3.027 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.266 1.266 22 H 0.094 0.906 23 H 0.043 0.957 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.116 0.884 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.333 0.667 34 H -0.034 1.034 35 H -0.009 1.009 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.587 -11.445 -10.683 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.308 6.308 4 C 0.020 3.980 5 H 0.086 0.914 6 C -0.031 4.031 7 O -0.303 6.303 8 C -0.012 4.012 9 C -0.214 4.214 10 C -0.028 4.028 11 H 0.073 0.927 12 N -0.305 5.305 13 C 0.088 3.912 14 C -0.574 4.574 15 H 0.080 0.920 16 C -0.197 4.197 17 N -0.574 5.574 18 Si 0.797 3.203 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.191 1.191 22 H 0.113 0.887 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.150 0.850 34 H -0.017 1.017 35 H 0.009 0.991 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.883 -11.307 -10.867 15.795 hybrid contribution 0.515 0.824 1.223 1.562 sum 2.398 -10.483 -9.645 14.445 Atomic orbital electron populations 1.21736 0.93258 1.03218 1.02224 1.22685 0.96222 0.83157 1.00468 1.87985 1.20196 1.27704 1.94926 1.22658 0.81941 0.97599 0.95805 0.91389 1.23101 0.81140 1.03461 0.95406 1.87893 1.21535 1.41825 1.79049 1.22665 1.01376 0.86783 0.90330 1.22884 0.95975 1.03075 0.99474 1.21748 0.93340 0.97125 0.90582 0.92736 1.60530 1.52108 1.16523 1.01305 1.19138 0.92881 0.85280 0.93864 1.21531 1.46095 0.93048 0.96721 0.91965 1.25953 0.95340 0.94705 1.03680 1.70090 1.50405 0.98213 1.38668 0.85328 0.78472 0.77865 0.78603 1.19455 1.20642 1.19061 0.88727 0.93742 0.91987 0.91606 0.93727 0.92506 0.86623 0.92618 0.86234 0.91527 0.90277 0.84980 1.01655 0.99052 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 10.28 71.98 0.74 -2.64 16 2 C 0.05 1.30 6.47 71.98 0.47 1.76 16 3 O -0.39 -13.18 9.92 -148.98 -1.48 -14.66 16 4 C 0.08 2.46 2.45 30.68 0.08 2.53 16 5 H 0.07 2.03 7.79 -2.38 -0.02 2.01 16 6 C 0.05 1.18 6.47 72.01 0.47 1.65 16 7 O -0.38 -10.11 10.76 -148.98 -1.60 -11.71 16 8 C 0.07 1.64 6.84 72.01 0.49 2.13 16 9 C -0.17 -5.38 5.39 30.68 0.17 -5.22 16 10 C 0.08 3.08 2.23 45.03 0.10 3.18 16 11 H 0.05 2.27 7.81 -2.38 -0.02 2.25 16 12 N -0.68 -30.37 6.17 -494.95 -3.05 -33.43 16 13 C 0.22 11.94 5.24 85.55 0.45 12.39 16 14 C -0.54 -31.38 9.32 25.60 0.24 -31.15 16 15 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 16 C 0.00 0.08 5.46 84.65 0.46 0.54 16 17 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 18 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.31 7.96 -2.38 -0.02 1.29 16 26 H 0.04 1.15 8.09 -2.39 -0.02 1.13 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.12 2.37 7.96 -2.39 -0.02 2.35 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.07 2.26 7.55 -2.39 -0.02 2.24 16 32 H 0.08 2.30 8.08 -2.39 -0.02 2.28 16 33 H 0.33 14.09 8.44 -89.69 -0.76 13.34 16 34 H -0.03 -1.98 7.51 -2.39 -0.02 -2.00 16 35 H -0.01 -0.53 8.06 -2.39 -0.02 -0.55 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -67.49 295.36 0.12 -67.38 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.29 Total: 17.22 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 3.65 Total: -14.82 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -2.77 Total: -90.45 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -3.08 Total: -26.37 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -67.49 0.12 -67.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591760099.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.143 kcal (2) G-P(sol) polarization free energy of solvation -67.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds