Wall clock time and date at job start Sun Mar 29 2020 21:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.42898 * 113.99821 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.52419 * 330.13092 * 4 3 2 6 6 C 1.53095 * 109.51959 * 90.31757 * 4 3 2 7 7 O 1.42893 * 109.41503 * 62.29755 * 6 4 3 8 8 C 1.42910 * 114.09826 * 61.15764 * 7 6 4 9 9 C 1.53091 * 109.41326 * 298.84086 * 8 7 6 10 10 C 1.53176 * 109.52497 * 210.00395 * 4 3 2 11 11 H 1.08997 * 109.54320 * 177.12073 * 10 4 3 12 12 N 1.46901 * 109.54181 * 56.94043 * 10 4 3 13 13 C 1.46902 * 110.99713 * 155.00057 * 12 10 4 14 14 C 1.50701 * 109.47098 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99846 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00090 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00107 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99770 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47262 * 90.00217 * 18 16 14 20 20 H 1.48504 * 109.46755 * 209.99982 * 18 16 14 21 21 H 1.48501 * 109.47238 * 330.00138 * 18 16 14 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 25 25 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 26 26 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 27 27 H 1.09004 * 109.47703 * 182.28442 * 6 4 3 28 28 H 1.09000 * 109.48121 * 302.30914 * 6 4 3 29 29 H 1.09001 * 109.47547 * 178.85928 * 8 7 6 30 30 H 1.08996 * 109.47952 * 58.82508 * 8 7 6 31 31 H 1.09002 * 109.52017 * 297.70304 * 9 8 7 32 32 H 1.08995 * 109.57213 * 177.54575 * 9 8 7 33 33 H 1.00896 * 110.99926 * 278.95349 * 12 10 4 34 34 H 1.08993 * 109.47376 * 299.99969 * 13 12 10 35 35 H 1.09002 * 109.46875 * 60.00062 * 13 12 10 36 36 H 0.97004 * 120.00495 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8642 0.6010 0.5125 6 6 3.9408 1.5084 -1.4422 7 8 3.4160 2.6673 -2.0929 8 6 3.8067 3.9025 -1.4896 9 6 3.2914 3.9505 -0.0489 10 6 3.8421 2.7471 0.7225 11 1 4.9294 2.8081 0.7680 12 7 3.2926 2.7434 2.0848 13 6 4.0948 3.5896 2.9783 14 6 3.5024 3.5605 4.3637 15 1 2.6186 2.9718 4.5608 16 6 4.0886 4.2854 5.3796 17 7 3.5713 4.2603 6.5884 18 14 5.6176 5.3030 5.0388 19 1 5.2188 6.6729 4.6273 20 1 6.4470 5.3771 6.2684 21 1 6.4024 4.6678 3.9498 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 5.0299 1.5536 -1.4414 28 1 3.6144 0.6142 -1.9731 29 1 3.3836 4.7329 -2.0549 30 1 4.8940 3.9791 -1.4896 31 1 2.2020 3.9146 -0.0503 32 1 3.6249 4.8722 0.4277 33 1 2.3257 3.0315 2.0855 34 1 5.1175 3.2144 3.0130 35 1 4.0959 4.6136 2.6047 36 1 3.9839 4.7700 7.3032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591760101.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:43 Heat of formation + Delta-G solvation = -96.830119 kcal Electronic energy + Delta-G solvation = -16821.116897 eV Core-core repulsion = 14112.204248 eV Total energy + Delta-G solvation = -2708.912649 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69785 -36.93882 -35.61158 -32.72924 -31.42692 -30.73903 -29.48554 -26.92374 -23.69493 -23.18483 -22.52707 -21.07677 -19.98774 -16.99843 -16.55255 -16.20879 -15.72981 -15.39217 -14.81897 -14.61769 -13.98645 -13.80278 -13.69186 -12.88316 -12.67190 -12.41618 -12.24785 -12.06116 -11.77951 -11.55277 -11.11373 -11.03654 -10.84944 -10.77642 -10.33056 -10.27945 -9.89539 -9.82268 -9.31162 -8.86400 -8.61154 -7.44262 -6.06660 -4.04462 3.26536 3.34150 3.35962 3.76925 4.10590 4.40448 4.74778 4.91846 5.03677 5.13835 5.21296 5.26219 5.32346 5.41099 5.46425 5.50504 5.53627 5.67499 5.72400 5.76701 5.99005 6.04997 6.08171 6.16244 6.25571 6.48931 6.75292 7.00845 7.19697 7.54941 7.60191 7.90389 8.37004 8.64785 9.02221 9.55204 11.06749 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028510 B = 0.007277 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.866259 B = 3847.047223 C = 4560.486120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.362 6.362 4 C 0.070 3.930 5 H 0.073 0.927 6 C 0.040 3.960 7 O -0.375 6.375 8 C 0.065 3.935 9 C -0.182 4.182 10 C 0.088 3.912 11 H 0.080 0.920 12 N -0.668 5.668 13 C 0.164 3.836 14 C -0.515 4.515 15 H 0.079 0.921 16 C 0.068 3.932 17 N -0.900 5.900 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.268 1.268 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.344 0.656 34 H 0.024 0.976 35 H -0.020 1.020 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 -5.236 -16.308 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.280 6.280 4 C 0.011 3.989 5 H 0.091 0.909 6 C -0.038 4.038 7 O -0.294 6.294 8 C -0.012 4.012 9 C -0.221 4.221 10 C -0.023 4.023 11 H 0.098 0.902 12 N -0.297 5.297 13 C 0.036 3.964 14 C -0.553 4.553 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.193 1.193 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.162 0.838 34 H 0.042 0.958 35 H -0.003 1.003 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.133 -5.599 -16.063 17.011 hybrid contribution 0.956 1.271 -0.024 1.591 sum 1.089 -4.328 -16.086 16.694 Atomic orbital electron populations 1.21705 0.94133 1.01694 1.03085 1.22439 0.95401 0.84609 0.99397 1.87952 1.19908 1.25401 1.94764 1.22819 0.82498 0.99392 0.94233 0.90931 1.23119 0.97540 0.89214 0.93886 1.87904 1.74229 1.13633 1.53616 1.22532 0.98313 0.86592 0.93768 1.22894 1.02960 1.00155 0.96119 1.21659 0.98697 0.91781 0.90203 0.90192 1.60494 1.06865 1.57830 1.04547 1.20047 0.94113 0.89507 0.92751 1.21062 1.13912 1.28924 0.91438 0.90289 1.24908 0.97101 0.96363 0.94971 1.69896 1.40720 1.42135 1.01164 0.86822 0.83789 0.80911 0.77942 1.20341 1.21145 1.19253 0.91647 0.91595 0.92231 0.93251 0.94377 0.92611 0.89121 0.89241 0.93617 0.90143 0.91040 0.83776 0.95802 1.00286 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 37.16 0.38 -1.33 16 2 C 0.06 0.75 6.47 37.16 0.24 0.99 16 3 O -0.36 -5.72 9.19 -42.73 -0.39 -6.12 16 4 C 0.07 1.04 2.64 -26.59 -0.07 0.97 16 5 H 0.07 1.06 7.79 -51.93 -0.40 0.66 16 6 C 0.04 0.51 6.49 37.21 0.24 0.76 16 7 O -0.38 -5.47 10.69 -42.73 -0.46 -5.93 16 8 C 0.07 0.87 6.84 37.20 0.25 1.12 16 9 C -0.18 -2.83 5.24 -26.59 -0.14 -2.97 16 10 C 0.09 1.50 2.34 -67.53 -0.16 1.34 16 11 H 0.08 1.34 7.80 -51.93 -0.41 0.94 16 12 N -0.67 -14.03 6.06 -107.80 -0.65 -14.69 16 13 C 0.16 3.97 4.31 -4.97 -0.02 3.95 16 14 C -0.52 -14.86 9.87 -34.44 -0.34 -15.20 16 15 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 18 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.04 0.43 7.86 -51.93 -0.41 0.02 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.02 7.86 -51.93 -0.41 0.61 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.34 7.77 -51.93 -0.40 0.94 16 32 H 0.07 1.14 7.57 -51.93 -0.39 0.74 16 33 H 0.34 7.37 8.40 -39.29 -0.33 7.04 16 34 H 0.02 0.59 7.11 -51.93 -0.37 0.22 16 35 H -0.02 -0.49 6.96 -51.93 -0.36 -0.85 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 290.52 15.07 4.38 4.38 Total: -1.00 -31.33 290.52 -6.76 -38.09 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.03 Total: 2.83 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 0.29 Total: -8.46 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.12 Total: -41.74 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.85 Total: -12.04 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.33 -6.76 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591760101.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.740 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds