Wall clock time and date at job start Sun Mar 29 2020 21:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.42898 * 113.99821 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.52419 * 330.13092 * 4 3 2 6 6 C 1.53095 * 109.51959 * 90.31757 * 4 3 2 7 7 O 1.42893 * 109.41503 * 62.29755 * 6 4 3 8 8 C 1.42910 * 114.09826 * 61.15764 * 7 6 4 9 9 C 1.53091 * 109.41326 * 298.84086 * 8 7 6 10 10 C 1.53176 * 109.52497 * 210.00395 * 4 3 2 11 11 H 1.08997 * 109.54320 * 177.12073 * 10 4 3 12 12 N 1.46901 * 109.54181 * 56.94043 * 10 4 3 13 13 C 1.46902 * 110.99713 * 155.00057 * 12 10 4 14 14 C 1.50701 * 109.47098 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99846 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00090 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00107 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99770 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47262 * 90.00217 * 18 16 14 20 20 H 1.48504 * 109.46755 * 209.99982 * 18 16 14 21 21 H 1.48501 * 109.47238 * 330.00138 * 18 16 14 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 25 25 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 26 26 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 27 27 H 1.09004 * 109.47703 * 182.28442 * 6 4 3 28 28 H 1.09000 * 109.48121 * 302.30914 * 6 4 3 29 29 H 1.09001 * 109.47547 * 178.85928 * 8 7 6 30 30 H 1.08996 * 109.47952 * 58.82508 * 8 7 6 31 31 H 1.09002 * 109.52017 * 297.70304 * 9 8 7 32 32 H 1.08995 * 109.57213 * 177.54575 * 9 8 7 33 33 H 1.00896 * 110.99926 * 278.95349 * 12 10 4 34 34 H 1.08993 * 109.47376 * 299.99969 * 13 12 10 35 35 H 1.09002 * 109.46875 * 60.00062 * 13 12 10 36 36 H 0.97004 * 120.00495 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8642 0.6010 0.5125 6 6 3.9408 1.5084 -1.4422 7 8 3.4160 2.6673 -2.0929 8 6 3.8067 3.9025 -1.4896 9 6 3.2914 3.9505 -0.0489 10 6 3.8421 2.7471 0.7225 11 1 4.9294 2.8081 0.7680 12 7 3.2926 2.7434 2.0848 13 6 4.0948 3.5896 2.9783 14 6 3.5024 3.5605 4.3637 15 1 2.6186 2.9718 4.5608 16 6 4.0886 4.2854 5.3796 17 7 3.5713 4.2603 6.5884 18 14 5.6176 5.3030 5.0388 19 1 5.2188 6.6729 4.6273 20 1 6.4470 5.3771 6.2684 21 1 6.4024 4.6678 3.9498 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 5.0299 1.5536 -1.4414 28 1 3.6144 0.6142 -1.9731 29 1 3.3836 4.7329 -2.0549 30 1 4.8940 3.9791 -1.4896 31 1 2.2020 3.9146 -0.0503 32 1 3.6249 4.8722 0.4277 33 1 2.3257 3.0315 2.0855 34 1 5.1175 3.2144 3.0130 35 1 4.0959 4.6136 2.6047 36 1 3.9839 4.7700 7.3032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591760101.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:43 Heat of formation + Delta-G solvation = -120.381579 kcal Electronic energy + Delta-G solvation = -16822.138165 eV Core-core repulsion = 14112.204248 eV Total energy + Delta-G solvation = -2709.933917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85454 -38.03485 -37.16682 -34.76697 -32.67881 -32.10836 -30.61921 -28.75546 -25.05622 -24.32862 -23.58762 -22.97339 -21.21281 -19.03721 -17.64413 -17.47775 -16.99181 -16.58805 -16.33780 -15.95416 -15.50462 -15.22400 -15.07474 -14.50646 -14.15565 -13.84854 -13.66441 -13.28129 -12.94840 -12.79773 -12.61078 -12.50915 -12.25207 -12.10795 -11.83998 -11.69564 -11.48602 -11.43043 -10.95249 -10.83224 -10.00311 -9.09941 -8.31585 -6.36470 1.33192 1.35475 1.46644 2.32599 2.72255 3.02208 3.06538 3.37629 3.81481 3.83494 3.98619 4.19035 4.25241 4.33046 4.41799 4.47610 4.53580 4.55862 4.61222 4.70886 4.77866 4.90367 4.92472 4.99148 5.10149 5.11657 5.23867 5.30972 5.50525 5.94136 6.17147 6.47272 6.55413 6.64103 6.73942 7.28468 8.85468 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028510 B = 0.007277 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.866259 B = 3847.047223 C = 4560.486120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.386 6.386 4 C 0.070 3.930 5 H 0.072 0.928 6 C 0.043 3.957 7 O -0.389 6.389 8 C 0.069 3.931 9 C -0.176 4.176 10 C 0.082 3.918 11 H 0.087 0.913 12 N -0.677 5.677 13 C 0.177 3.823 14 C -0.530 4.530 15 H 0.033 0.967 16 C 0.007 3.993 17 N -0.948 5.948 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.247 1.247 22 H 0.090 0.910 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.337 0.663 34 H 0.027 0.973 35 H -0.013 1.013 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.744 -5.046 -18.558 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 O -0.305 6.305 4 C 0.011 3.989 5 H 0.090 0.910 6 C -0.034 4.034 7 O -0.308 6.308 8 C -0.009 4.009 9 C -0.215 4.215 10 C -0.029 4.029 11 H 0.105 0.895 12 N -0.306 5.306 13 C 0.048 3.952 14 C -0.568 4.568 15 H 0.051 0.949 16 C -0.191 4.191 17 N -0.589 5.589 18 Si 0.776 3.224 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.171 1.171 22 H 0.108 0.892 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.154 0.846 34 H 0.045 0.955 35 H 0.004 0.996 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.842 -5.428 -18.343 19.218 hybrid contribution 0.312 1.126 0.704 1.364 sum 2.154 -4.302 -17.639 18.283 Atomic orbital electron populations 1.21714 0.93309 1.03071 1.02196 1.22618 0.96147 0.83534 1.00088 1.87924 1.20442 1.27180 1.94987 1.22826 0.82377 0.98040 0.95664 0.90955 1.23208 0.98669 0.89433 0.92085 1.87893 1.74774 1.14302 1.53835 1.22597 0.99439 0.86843 0.91979 1.22788 1.01818 0.99070 0.97821 1.21828 0.98952 0.93877 0.88193 0.89537 1.60408 1.06217 1.57058 1.06917 1.19775 0.94047 0.90417 0.90914 1.21346 1.12849 1.28352 0.94264 0.94897 1.25919 1.01000 0.97708 0.94438 1.70058 1.42830 1.43499 1.02490 0.85624 0.79040 0.79185 0.78508 1.19117 1.20588 1.17086 0.89164 0.93447 0.92087 0.94041 0.92080 0.90512 0.87309 0.87606 0.91743 0.91884 0.91543 0.84570 0.95542 0.99578 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 10.28 71.98 0.74 -2.48 16 2 C 0.05 1.30 6.47 71.98 0.47 1.76 16 3 O -0.39 -11.94 9.19 -141.81 -1.30 -13.24 16 4 C 0.07 1.97 2.64 30.68 0.08 2.05 16 5 H 0.07 2.02 7.79 -2.38 -0.02 2.00 16 6 C 0.04 0.98 6.49 72.01 0.47 1.44 16 7 O -0.39 -10.21 10.69 -141.81 -1.52 -11.73 16 8 C 0.07 1.62 6.84 72.01 0.49 2.12 16 9 C -0.18 -5.21 5.24 30.68 0.16 -5.05 16 10 C 0.08 2.68 2.34 45.03 0.11 2.79 16 11 H 0.09 2.70 7.80 -2.39 -0.02 2.68 16 12 N -0.68 -28.59 6.06 -494.96 -3.00 -31.59 16 13 C 0.18 8.53 4.31 85.56 0.37 8.90 16 14 C -0.53 -31.38 9.87 25.60 0.25 -31.13 16 15 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 16 C 0.01 0.40 5.47 84.66 0.46 0.86 16 17 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 18 Si 0.95 44.10 27.47 68.60 1.88 45.99 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 22 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.04 1.07 8.09 -2.39 -0.02 1.05 16 26 H 0.06 1.22 7.86 -2.39 -0.02 1.20 16 27 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.11 2.05 7.86 -2.39 -0.02 2.04 16 29 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 2.08 7.77 -2.39 -0.02 2.06 16 32 H 0.07 2.01 7.57 -2.39 -0.02 2.00 16 33 H 0.34 14.90 8.40 -89.70 -0.75 14.14 16 34 H 0.03 1.27 7.11 -2.39 -0.02 1.25 16 35 H -0.01 -0.62 6.96 -2.39 -0.02 -0.64 16 36 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -68.51 290.52 0.20 -68.31 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.24 Total: 20.77 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 3.60 Total: -18.74 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -2.70 Total: -91.35 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -2.82 Total: -24.97 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Total: -68.51 0.20 -68.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591760101.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.067 kcal (2) G-P(sol) polarization free energy of solvation -68.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds