Wall clock time and date at job start Sun Mar 29 2020 21:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00000 * 2 1 4 4 C 1.52993 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47161 * 184.99746 * 4 3 2 6 6 N 1.46901 * 109.47269 * 64.99883 * 4 3 2 7 7 C 1.46905 * 110.99870 * 84.99904 * 6 4 3 8 8 C 1.50697 * 109.47066 * 180.02562 * 7 6 4 9 9 H 1.08000 * 120.00144 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00103 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99864 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 119.99815 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47527 * 89.99455 * 12 10 8 14 14 H 1.48497 * 109.47120 * 209.99666 * 12 10 8 15 15 H 1.48499 * 109.47065 * 329.99353 * 12 10 8 16 16 C 1.53001 * 109.47245 * 304.99761 * 4 3 2 17 17 H 1.08994 * 110.32934 * 302.25234 * 16 4 3 18 18 C 1.54478 * 110.37212 * 179.97438 * 16 4 3 19 19 C 1.54512 * 104.06308 * 217.19251 * 18 16 4 20 20 C 1.54480 * 104.06359 * 0.02562 * 19 18 16 21 21 O 1.44422 * 104.80001 * 23.97750 * 20 19 18 22 22 H 1.08992 * 109.47622 * 299.99920 * 1 2 3 23 23 H 1.08998 * 109.47318 * 60.00408 * 1 2 3 24 24 H 1.09002 * 109.46929 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46894 * 59.99827 * 3 2 1 26 26 H 1.08999 * 109.46806 * 299.99906 * 3 2 1 27 27 H 1.00901 * 111.00067 * 208.95080 * 6 4 3 28 28 H 1.09001 * 109.46798 * 300.00327 * 7 6 4 29 29 H 1.08998 * 109.46961 * 60.00043 * 7 6 4 30 30 H 0.97004 * 119.99699 * 180.02562 * 11 10 8 31 31 H 1.09000 * 110.51473 * 335.83986 * 18 16 4 32 32 H 1.09004 * 110.50977 * 98.55103 * 18 16 4 33 33 H 1.08998 * 110.51321 * 118.65098 * 19 18 16 34 34 H 1.08998 * 110.50732 * 241.35641 * 19 18 16 35 35 H 1.08996 * 110.36765 * 142.80766 * 20 19 18 36 36 H 1.08994 * 110.37153 * 265.04158 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 1 3.9783 2.1767 0.0902 6 7 3.9778 0.5624 -1.2543 7 6 4.1207 1.5657 -2.3178 8 6 4.5743 0.8914 -3.5868 9 1 4.7395 -0.1758 -3.6020 10 6 4.7774 1.6368 -4.7289 11 7 5.1738 1.0483 -5.8363 12 14 4.4909 3.4824 -4.7029 13 1 5.7502 4.1736 -4.3265 14 1 4.0610 3.9357 -6.0500 15 1 3.4337 3.8053 -3.7113 16 6 3.9780 0.3200 1.1826 17 1 3.6223 0.7485 2.1195 18 6 5.5166 0.1837 1.2028 19 6 5.7587 -1.2702 1.6664 20 6 4.3377 -1.8406 1.8709 21 8 3.4902 -1.0308 1.0272 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8463 -0.8900 27 1 4.8378 0.0517 -1.1211 28 1 3.1608 2.0531 -2.4887 29 1 4.8580 2.3104 -2.0180 30 1 5.3170 1.5728 -6.6396 31 1 5.9270 0.3398 0.2051 32 1 5.9532 0.8880 1.9109 33 1 6.2888 -1.8329 0.8980 34 1 6.3149 -1.2845 2.6037 35 1 4.2990 -2.8839 1.5579 36 1 4.0377 -1.7467 2.9145 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591764229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:26 Heat of formation + Delta-G solvation = -83.422090 kcal Electronic energy + Delta-G solvation = -16954.733376 eV Core-core repulsion = 14246.402143 eV Total energy + Delta-G solvation = -2708.331233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.43663 -37.24587 -35.21931 -32.55984 -31.69470 -30.27711 -27.78226 -26.52978 -25.43766 -23.06285 -21.45007 -20.95050 -19.75683 -16.93116 -16.31066 -15.94537 -15.91517 -14.98932 -14.85429 -14.40373 -14.29651 -13.78845 -13.37245 -13.12292 -12.47384 -12.34161 -12.08463 -11.75480 -11.53818 -11.46242 -11.03607 -10.96678 -10.67156 -10.56574 -10.37951 -10.10072 -9.76723 -9.34874 -9.17622 -9.06203 -8.56450 -7.31832 -6.01829 -3.98871 3.28944 3.36716 3.39024 4.13798 4.33993 4.44397 4.75055 4.88959 5.02485 5.09979 5.27121 5.30745 5.41719 5.47986 5.58591 5.71197 5.72807 5.76572 5.86324 5.91282 5.95727 5.99541 6.06249 6.17135 6.20789 6.30159 6.78704 7.04117 7.22933 7.65281 7.74923 8.01123 8.45002 8.71814 9.08558 9.60309 11.11695 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.024897 B = 0.008111 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.349395 B = 3451.390490 C = 4030.880261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.345 6.345 3 C 0.077 3.923 4 C 0.089 3.911 5 H 0.059 0.941 6 N -0.656 5.656 7 C 0.162 3.838 8 C -0.510 4.510 9 H 0.080 0.920 10 C 0.067 3.933 11 N -0.901 5.901 12 Si 0.877 3.123 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.268 1.268 16 C 0.081 3.919 17 H 0.062 0.938 18 C -0.159 4.159 19 C -0.152 4.152 20 C 0.038 3.962 21 O -0.322 6.322 22 H 0.027 0.973 23 H 0.034 0.966 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.338 0.662 28 H 0.025 0.975 29 H -0.024 1.024 30 H 0.263 0.737 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 -0.190 16.894 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.262 6.262 3 C -0.001 4.001 4 C -0.022 4.022 5 H 0.076 0.924 6 N -0.289 5.289 7 C 0.034 3.966 8 C -0.549 4.549 9 H 0.098 0.902 10 C -0.134 4.134 11 N -0.540 5.540 12 Si 0.705 3.295 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.193 1.193 16 C 0.023 3.977 17 H 0.080 0.920 18 C -0.197 4.197 19 C -0.190 4.190 20 C -0.040 4.040 21 O -0.239 6.239 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.097 0.903 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.159 0.841 28 H 0.043 0.957 29 H -0.006 1.006 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.786 -0.585 16.364 16.806 hybrid contribution 0.678 1.853 0.273 1.992 sum -3.109 1.268 16.636 16.972 Atomic orbital electron populations 1.22648 0.83367 1.01921 0.98721 1.88204 1.17105 1.26033 1.94892 1.22462 0.93475 0.85537 0.98640 1.21644 0.94193 0.95477 0.90921 0.92384 1.60357 1.37881 1.27337 1.03349 1.20104 0.95023 0.90440 0.91009 1.21060 1.44313 0.96846 0.92652 0.90214 1.24910 0.94886 0.98206 0.95413 1.69905 1.47179 1.35843 1.01089 0.86834 0.78859 0.86370 0.77468 1.20425 1.21188 1.19261 1.23013 0.91885 0.85817 0.97032 0.92025 1.23093 0.96855 0.96961 1.02837 1.22909 0.98295 0.96194 1.01633 1.23361 0.89185 0.96741 0.94695 1.89503 1.53273 1.15907 1.65238 0.95479 0.94775 0.90282 0.94731 0.93311 0.84069 0.95741 1.00630 0.92731 0.90022 0.91030 0.90529 0.91280 0.89523 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.34 -6.37 8.65 -56.80 -0.49 -6.86 16 3 C 0.08 1.32 5.69 37.15 0.21 1.53 16 4 C 0.09 1.56 2.37 -67.72 -0.16 1.40 16 5 H 0.06 0.96 7.80 -51.93 -0.40 0.56 16 6 N -0.66 -14.30 6.04 -107.99 -0.65 -14.95 16 7 C 0.16 4.02 4.31 -4.97 -0.02 4.00 16 8 C -0.51 -14.96 9.87 -34.44 -0.34 -15.30 16 9 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 10 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 11 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 12 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 16 C 0.08 1.23 2.98 -25.96 -0.08 1.15 16 17 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 18 C -0.16 -2.12 6.30 -25.16 -0.16 -2.28 16 19 C -0.15 -1.81 7.09 -25.16 -0.18 -1.99 16 20 C 0.04 0.49 7.63 37.93 0.29 0.78 16 21 O -0.32 -5.48 9.29 -56.80 -0.53 -6.00 16 22 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.90 7.35 -51.93 -0.38 0.52 16 27 H 0.34 7.26 6.24 -39.29 -0.25 7.01 16 28 H 0.02 0.63 6.42 -51.93 -0.33 0.29 16 29 H -0.02 -0.57 7.48 -51.93 -0.39 -0.96 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.08 1.24 6.13 -51.93 -0.32 0.92 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 288.10 15.07 4.34 4.34 Total: -1.00 -32.76 288.10 -6.54 -39.29 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.89 Total: 1.63 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 0.58 Total: -7.27 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.12 Total: -42.32 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -1.02 Total: -12.87 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.76 -6.54 -39.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591764229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.130 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds